RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 KDM5AP29375 1690 aaKnown RBP15.12■□□□□ 0.01
CUX1-202ENST00000292538 U2AF1L5P0DN76 240 aaPredicted RBP15.12■□□□□ 0.01
CUX1-202ENST00000292538 U2AF1Q01081 240 aaKnown RBP eCLIP15.12■□□□□ 0.015e-6■□□□□ 11.2
CUX1-202ENST00000292538 SBNO2Q9Y2G9 1366 aa15.11■□□□□ 0.01
CUX1-202ENST00000292538 SPINK5Q9NQ38 1064 aaPredicted RBP15.11■□□□□ 0.01
CUX1-202ENST00000292538 PIK3C2BO00750 1634 aa15.1■□□□□ 0.01
CUX1-202ENST00000292538 NEURL4Q96JN8 1562 aa15.1■□□□□ 0.01
CUX1-202ENST00000292538 NCKAP5LQ9HCH0 1330 aa15.1■□□□□ 0.01
CUX1-202ENST00000292538 PPP6R1Q9UPN7 881 aa15.1■□□□□ 0.01
CUX1-202ENST00000292538 PPLO60437 1756 aa15.1■□□□□ 0.01
CUX1-202ENST00000292538 YTHDC2Q9H6S0 1430 aaKnown RBP15.1■□□□□ 0.01
CUX1-202ENST00000292538 CFAP53Q96M91 514 aa15.1■□□□□ 0.01
CUX1-202ENST00000292538 TERF2IPQ9NYB0 399 aa15.1■□□□□ 0.01
CUX1-202ENST00000292538 KIAA1210Q9ULL0 1709 aa15.09■□□□□ 0.01
CUX1-202ENST00000292538 SLC26A8Q96RN1 970 aa15.09■□□□□ 0.01
CUX1-202ENST00000292538 DMRT2Q9Y5R5 561 aa15.09■□□□□ 0.01
CUX1-202ENST00000292538 RIMS2Q9UQ26 1411 aa15.09■□□□□ 0.01
CUX1-202ENST00000292538 C20orf194Q5TEA3 1177 aa15.09■□□□□ 0.01
CUX1-202ENST00000292538 HDGFL2Q7Z4V5 671 aaPredicted RBP15.08■□□□□ 0
CUX1-202ENST00000292538 BLMP54132 1417 aaPredicted RBP15.08■□□□□ 0
CUX1-202ENST00000292538 IFT172Q9UG01 1749 aa15.08■□□□□ 0
CUX1-202ENST00000292538 A0A1W2PP64 1363 aa15.07■□□□□ 0
CUX1-202ENST00000292538 DUSP27Q5VZP5 1158 aa15.07■□□□□ 0
CUX1-202ENST00000292538 NPC1L1Q9UHC9 1359 aa15.07■□□□□ 0
CUX1-202ENST00000292538 RNF123Q5XPI4 1314 aa15.07■□□□□ 0
CUX1-202ENST00000292538 CRBNQ96SW2 442 aa15.06■□□□□ 0
CUX1-202ENST00000292538 SETBP1Q9Y6X0 1596 aa15.06■□□□□ 0
CUX1-202ENST00000292538 ZMYM4Q5VZL5 1548 aa15.06■□□□□ 0
CUX1-202ENST00000292538 MYOM1P52179 1685 aa15.06■□□□□ 0
CUX1-202ENST00000292538 PREX1Q8TCU6 1659 aa15.05■□□□□ 0
CUX1-202ENST00000292538 ANKRD36BQ8N2N9 1353 aa15.05■□□□□ 0
CUX1-202ENST00000292538 FYB1O15117 783 aa15.05■□□□□ 0
CUX1-202ENST00000292538 TCP11L2Q8N4U5 519 aa15.05■□□□□ 0
CUX1-202ENST00000292538 CLTCQ00610 1675 aaKnown RBP15.05■□□□□ -0
CUX1-202ENST00000292538 QRICH2Q9H0J4 1663 aa15.05■□□□□ -0
CUX1-202ENST00000292538 HDGFP51858 240 aaKnown RBP15.04■□□□□ -0
CUX1-202ENST00000292538 METP08581 1390 aa15.04■□□□□ -0
CUX1-202ENST00000292538 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.04■□□□□ -0
CUX1-202ENST00000292538 A2ML1A8K2U0 1454 aa15.04■□□□□ -0
CUX1-202ENST00000292538 MYO5BQ9ULV0 1848 aa15.04■□□□□ -0
CUX1-202ENST00000292538 SOX12O15370 315 aa15.03■□□□□ -0
CUX1-202ENST00000292538 TULP4Q9NRJ4 1543 aa15.03■□□□□ -0
CUX1-202ENST00000292538 TNRQ92752 1358 aa15.03■□□□□ -0
CUX1-202ENST00000292538 TMEM131LA2VDJ0 1609 aa15.03■□□□□ -0
CUX1-202ENST00000292538 BCAR3O75815 825 aa15.03■□□□□ -0
CUX1-202ENST00000292538 SLFN5Q08AF3 891 aa15.03■□□□□ -0
CUX1-202ENST00000292538 SKAP1Q86WV1 359 aa15.03■□□□□ -0
CUX1-202ENST00000292538 ZFYVE9O95405 1425 aa15.02■□□□□ -0
CUX1-202ENST00000292538 CANXP27824 592 aaKnown RBP15.02■□□□□ -0
CUX1-202ENST00000292538 LTKP29376 864 aa15.02□□□□□ -0.01
CUX1-202ENST00000292538 WWC1Q8IX03 1113 aa15.02□□□□□ -0.01
CUX1-202ENST00000292538 ZRANB1Q9UGI0 708 aa15.02□□□□□ -0.01
CUX1-202ENST00000292538 FRAT1Q92837 279 aaPredicted RBP15.01□□□□□ -0.01
CUX1-202ENST00000292538 RUNDC1Q96C34 613 aa15.01□□□□□ -0.01
CUX1-202ENST00000292538 BCL2L13Q9BXK5 485 aa15.01□□□□□ -0.01
CUX1-202ENST00000292538 ZC3H13Q5T200 1668 aaKnown RBP15.01□□□□□ -0.01
CUX1-202ENST00000292538 ATAD2Q6PL18 1390 aa15.01□□□□□ -0.01
CUX1-202ENST00000292538 ALKQ9UM73 1620 aa15□□□□□ -0.01
CUX1-202ENST00000292538 PTPRMP28827 1452 aa14.99□□□□□ -0.01
CUX1-202ENST00000292538 POLR3AO14802 1390 aaPredicted RBP14.99□□□□□ -0.01
CUX1-202ENST00000292538 WASLO00401 505 aaPredicted RBP14.99□□□□□ -0.01
CUX1-202ENST00000292538 E9PSI1 815 aa14.99□□□□□ -0.01
CUX1-202ENST00000292538 NME9Q86XW9 330 aa14.99□□□□□ -0.01
CUX1-202ENST00000292538 ZNF521Q96K83 1311 aa14.98□□□□□ -0.01
CUX1-202ENST00000292538 AGLP35573 1532 aa14.98□□□□□ -0.01
CUX1-202ENST00000292538 NUDT16Q96DE0 195 aaKnown RBP14.98□□□□□ -0.01
CUX1-202ENST00000292538 EID1Q9Y6B2 187 aa14.98□□□□□ -0.01
CUX1-202ENST00000292538 PUS7Q96PZ0 661 aaKnown RBP14.97□□□□□ -0.01
CUX1-202ENST00000292538 HMOX1P09601 288 aa14.96□□□□□ -0.01
CUX1-202ENST00000292538 MYO3AQ8NEV4 1616 aa14.96□□□□□ -0.01
CUX1-202ENST00000292538 RRS1Q15050 365 aaKnown RBP14.96□□□□□ -0.02
CUX1-202ENST00000292538 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.96□□□□□ -0.02
CUX1-202ENST00000292538 RBM33Q96EV2 1170 aaKnown RBP14.96□□□□□ -0.02
CUX1-202ENST00000292538 MAPK8IP3Q9UPT6 1336 aa14.95□□□□□ -0.02
CUX1-202ENST00000292538 KIF13AQ9H1H9 1805 aa14.95□□□□□ -0.02
CUX1-202ENST00000292538 ARHGEF28Q8N1W1 1705 aaKnown RBP14.95□□□□□ -0.02
CUX1-202ENST00000292538 DIAPH1O60610 1272 aaKnown RBP14.95□□□□□ -0.02
CUX1-202ENST00000292538 PLEKHG5O94827 1062 aa14.95□□□□□ -0.02
CUX1-202ENST00000292538 LAS1LQ9Y4W2 734 aaKnown RBP14.95□□□□□ -0.02
CUX1-202ENST00000292538 EMILIN1Q9Y6C2 1016 aa14.95□□□□□ -0.02
CUX1-202ENST00000292538 PMFBP1Q8TBY8 1022 aa14.94□□□□□ -0.02
CUX1-202ENST00000292538 ARHGEF40Q8TER5 1519 aa14.94□□□□□ -0.02
CUX1-202ENST00000292538 ABCC11Q96J66 1382 aa14.94□□□□□ -0.02
CUX1-202ENST00000292538 TMEM2Q9UHN6 1383 aa14.94□□□□□ -0.02
CUX1-202ENST00000292538 TSR2Q969E8 191 aaKnown RBP14.94□□□□□ -0.02
CUX1-202ENST00000292538 INSRP06213 1382 aa14.93□□□□□ -0.02
CUX1-202ENST00000292538 PRKCSHP14314 528 aaPredicted RBP14.93□□□□□ -0.02
CUX1-202ENST00000292538 CLUAP1Q96AJ1 413 aa14.93□□□□□ -0.02
CUX1-202ENST00000292538 CCDC61Q9Y6R9 512 aa14.93□□□□□ -0.02
CUX1-202ENST00000292538 NPM2Q86SE8 214 aaKnown RBP14.93□□□□□ -0.02
CUX1-202ENST00000292538 AMOTL2Q9Y2J4 779 aa14.92□□□□□ -0.02
CUX1-202ENST00000292538 SPATA31D1Q6ZQQ2 1576 aa14.92□□□□□ -0.02
CUX1-202ENST00000292538 PANK1Q8TE04 598 aa14.91□□□□□ -0.02
CUX1-202ENST00000292538 PPIP5K1Q6PFW1 1433 aa14.91□□□□□ -0.02
CUX1-202ENST00000292538 RIPK4P57078 832 aa14.91□□□□□ -0.02
CUX1-202ENST00000292538 COG3Q96JB2 828 aa14.91□□□□□ -0.02
CUX1-202ENST00000292538 POLKQ9UBT6 870 aa14.9□□□□□ -0.02
CUX1-202ENST00000292538 COG6Q9Y2V7 657 aa14.9□□□□□ -0.02
CUX1-202ENST00000292538 ROBO2Q9HCK4 1378 aa14.9□□□□□ -0.02
CUX1-202ENST00000292538 NSD2O96028 1365 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms