RNA–Protein interactions for RNA: ENST00000288344.14

HMGN1-201, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,303 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-201ENST00000288344 SIRT1Q96EB6 747 aa13.43□□□□□ -0.26
HMGN1-201ENST00000288344 C19orf44Q9H6X5 657 aa13.43□□□□□ -0.26
HMGN1-201ENST00000288344 FAM135BQ49AJ0 1406 aa13.43□□□□□ -0.26
HMGN1-201ENST00000288344 CFAP70Q5T0N1 1121 aa13.42□□□□□ -0.26
HMGN1-201ENST00000288344 PTCH1Q13635 1447 aa13.42□□□□□ -0.26
HMGN1-201ENST00000288344 TMEM132EQ6IEE7 984 aa13.41□□□□□ -0.26
HMGN1-201ENST00000288344 SIN3AQ96ST3 1273 aa13.41□□□□□ -0.26
HMGN1-201ENST00000288344 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.41□□□□□ -0.26
HMGN1-201ENST00000288344 LRPPRCP42704 1394 aaKnown RBP13.41□□□□□ -0.26
HMGN1-201ENST00000288344 ADGRB1O14514 1584 aa13.41□□□□□ -0.26
HMGN1-201ENST00000288344 SPDYE4A6NLX3 237 aa13.4□□□□□ -0.26
HMGN1-201ENST00000288344 DCAF11Q8TEB1 546 aa13.4□□□□□ -0.26
HMGN1-201ENST00000288344 SLAIN2Q9P270 581 aa13.4□□□□□ -0.26
HMGN1-201ENST00000288344 HSPA1LP34931 641 aa13.39□□□□□ -0.27
HMGN1-201ENST00000288344 MSH6P52701 1360 aa13.38□□□□□ -0.27
HMGN1-201ENST00000288344 DCCP43146 1447 aa13.38□□□□□ -0.27
HMGN1-201ENST00000288344 YTHDC2Q9H6S0 1430 aaKnown RBP13.38□□□□□ -0.27
HMGN1-201ENST00000288344 PIP4K2BP78356 416 aa13.38□□□□□ -0.27
HMGN1-201ENST00000288344 L3MBTL2Q969R5 705 aa13.38□□□□□ -0.27
HMGN1-201ENST00000288344 ADGRL3Q9HAR2 1447 aa13.37□□□□□ -0.27
HMGN1-201ENST00000288344 WAPLQ7Z5K2 1190 aa13.37□□□□□ -0.27
HMGN1-201ENST00000288344 PLEKHH1Q9ULM0 1364 aa13.36□□□□□ -0.27
HMGN1-201ENST00000288344 KNDC1Q76NI1 1749 aa13.36□□□□□ -0.27
HMGN1-201ENST00000288344 NALCNQ8IZF0 1738 aa13.36□□□□□ -0.27
HMGN1-201ENST00000288344 CADPS2Q86UW7 1296 aa13.36□□□□□ -0.27
HMGN1-201ENST00000288344 PROM2Q8N271 834 aa13.36□□□□□ -0.27
HMGN1-201ENST00000288344 KDM2AQ9Y2K7 1162 aa13.36□□□□□ -0.27
HMGN1-201ENST00000288344 MST1RQ04912 1400 aa13.35□□□□□ -0.27
HMGN1-201ENST00000288344 LAMC1P11047 1609 aa13.35□□□□□ -0.27
HMGN1-201ENST00000288344 ROBO1Q9Y6N7 1651 aa13.33□□□□□ -0.28
HMGN1-201ENST00000288344 DLC1Q96QB1 1528 aa13.33□□□□□ -0.28
HMGN1-201ENST00000288344 NBPF1Q3BBV0 1214 aa13.32□□□□□ -0.28
HMGN1-201ENST00000288344 BRINP3Q76B58 766 aa13.32□□□□□ -0.28
HMGN1-201ENST00000288344 STK26Q9P289 416 aa13.32□□□□□ -0.28
HMGN1-201ENST00000288344 KIAA1210Q9ULL0 1709 aa13.31□□□□□ -0.28
HMGN1-201ENST00000288344 ATF3P18847 181 aa13.31□□□□□ -0.28
HMGN1-201ENST00000288344 C1orf167Q5SNV9 1468 aa13.3□□□□□ -0.28
HMGN1-201ENST00000288344 NBPF8Q3BBV2 869 aa13.3□□□□□ -0.28
HMGN1-201ENST00000288344 PCGF6Q9BYE7 350 aa13.29□□□□□ -0.28
HMGN1-201ENST00000288344 AHDC1Q5TGY3 1603 aaPredicted RBP13.28□□□□□ -0.28
HMGN1-201ENST00000288344 NEUROD1Q13562 356 aa13.28□□□□□ -0.28
HMGN1-201ENST00000288344 CDC42BPGQ6DT37 1551 aa13.27□□□□□ -0.28
HMGN1-201ENST00000288344 C14orf37Q86TY3 774 aa13.27□□□□□ -0.29
HMGN1-201ENST00000288344 PRAM1Q96QH2 718 aa13.27□□□□□ -0.29
HMGN1-201ENST00000288344 ORAI2Q96SN7 254 aa13.26□□□□□ -0.29
HMGN1-201ENST00000288344 TRAK1Q9UPV9 953 aa13.26□□□□□ -0.29
HMGN1-201ENST00000288344 COL16A1Q07092 1604 aaPredicted RBP13.26□□□□□ -0.29
HMGN1-201ENST00000288344 SPDYE2BA6NHP3 402 aa13.25□□□□□ -0.29
HMGN1-201ENST00000288344 SPDYE6P0CI01 402 aa13.25□□□□□ -0.29
HMGN1-201ENST00000288344 SPDYE2Q495Y8 402 aa13.25□□□□□ -0.29
HMGN1-201ENST00000288344 NHSL1Q5SYE7 1610 aa13.24□□□□□ -0.29
HMGN1-201ENST00000288344 GPRASP1Q5JY77 1395 aa13.24□□□□□ -0.29
HMGN1-201ENST00000288344 ARHGEF28Q8N1W1 1705 aaKnown RBP13.24□□□□□ -0.29
HMGN1-201ENST00000288344 TRPM1Q7Z4N2 1603 aa13.24□□□□□ -0.29
HMGN1-201ENST00000288344 ADGRB2O60241 1585 aa13.23□□□□□ -0.29
HMGN1-201ENST00000288344 SOS2Q07890 1332 aaPredicted RBP13.23□□□□□ -0.29
HMGN1-201ENST00000288344 AKT1S1Q96B36 256 aa13.23□□□□□ -0.29
HMGN1-201ENST00000288344 FMN2Q9NZ56 1722 aa13.23□□□□□ -0.29
HMGN1-201ENST00000288344 CLSPNQ9HAW4 1339 aa13.22□□□□□ -0.29
HMGN1-201ENST00000288344 DDX17Q92841 729 aaKnown RBP13.22□□□□□ -0.29
HMGN1-201ENST00000288344 PHLPP1O60346 1717 aa13.21□□□□□ -0.29
HMGN1-201ENST00000288344 USP32Q8NFA0 1604 aa13.21□□□□□ -0.29
HMGN1-201ENST00000288344 PRR36Q9H6K5 1346 aa13.2□□□□□ -0.3
HMGN1-201ENST00000288344 RGPD8O14715 1765 aaPredicted RBP13.2□□□□□ -0.3
HMGN1-201ENST00000288344 WASLO00401 505 aaPredicted RBP13.19□□□□□ -0.3
HMGN1-201ENST00000288344 RGS17Q9UGC6 210 aaPredicted RBP13.19□□□□□ -0.3
HMGN1-201ENST00000288344 FBXO3Q9UK99 471 aa13.19□□□□□ -0.3
HMGN1-201ENST00000288344 JCADQ9P266 1359 aa13.19□□□□□ -0.3
HMGN1-201ENST00000288344 SAFB2Q14151 953 aaKnown RBP eCLIP13.18□□□□□ -0.3
HMGN1-201ENST00000288344 POGKQ9P215 609 aa13.18□□□□□ -0.3
HMGN1-201ENST00000288344 TIMELESSQ9UNS1 1208 aa13.18□□□□□ -0.3
HMGN1-201ENST00000288344 PXDNQ92626 1479 aa13.18□□□□□ -0.3
HMGN1-201ENST00000288344 ANKARQ7Z5J8 1434 aa13.17□□□□□ -0.3
HMGN1-201ENST00000288344 MED1Q15648 1581 aaPredicted RBP13.17□□□□□ -0.3
HMGN1-201ENST00000288344 MINK1Q8N4C8 1332 aaPredicted RBP13.17□□□□□ -0.3
HMGN1-201ENST00000288344 NUTM2FA1L443 756 aa13.16□□□□□ -0.3
HMGN1-201ENST00000288344 ESCO1Q5FWF5 840 aa13.16□□□□□ -0.3
HMGN1-201ENST00000288344 LRRC59Q96AG4 307 aaKnown RBP13.16□□□□□ -0.3
HMGN1-201ENST00000288344 ZNF692Q9BU19 519 aaPredicted RBP13.16□□□□□ -0.3
HMGN1-201ENST00000288344 HIRIP3Q9BW71 556 aaPredicted RBP13.16□□□□□ -0.3
HMGN1-201ENST00000288344 SHPRHQ149N8 1683 aa13.16□□□□□ -0.3
HMGN1-201ENST00000288344 FOXO3O43524 673 aa13.15□□□□□ -0.3
HMGN1-201ENST00000288344 RALGAPBQ86X10 1494 aa13.15□□□□□ -0.3
HMGN1-201ENST00000288344 CDK19Q9BWU1 502 aa13.14□□□□□ -0.31
HMGN1-201ENST00000288344 PNPLA6Q8IY17 1366 aa13.14□□□□□ -0.31
HMGN1-201ENST00000288344 TONSLQ96HA7 1378 aa13.14□□□□□ -0.31
HMGN1-201ENST00000288344 SPATA31A6Q5VVP1 1343 aa13.14□□□□□ -0.31
HMGN1-201ENST00000288344 TULP4Q9NRJ4 1543 aa13.14□□□□□ -0.31
HMGN1-201ENST00000288344 LRP6O75581 1613 aa13.14□□□□□ -0.31
HMGN1-201ENST00000288344 PHF8Q9UPP1 1060 aa13.13□□□□□ -0.31
HMGN1-201ENST00000288344 NPHP3Q7Z494 1330 aa13.13□□□□□ -0.31
HMGN1-201ENST00000288344 CENPJQ9HC77 1338 aaPredicted RBP13.13□□□□□ -0.31
HMGN1-201ENST00000288344 ATP7BP35670 1465 aa13.13□□□□□ -0.31
HMGN1-201ENST00000288344 ROCK2O75116 1388 aaKnown RBP13.13□□□□□ -0.31
HMGN1-201ENST00000288344 PLEKHG3A1L390 1219 aa13.13□□□□□ -0.31
HMGN1-201ENST00000288344 ILDR2Q71H61 639 aa13.13□□□□□ -0.31
HMGN1-201ENST00000288344 NUDT16Q96DE0 195 aaKnown RBP13.13□□□□□ -0.31
HMGN1-201ENST00000288344 SPATA31A3Q5VYP0 1347 aa13.11□□□□□ -0.31
HMGN1-201ENST00000288344 KIF1AQ12756 1690 aa13.11□□□□□ -0.31
HMGN1-201ENST00000288344 DISP3Q9P2K9 1392 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms