RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 NUDCQ9Y266 331 aa22.3■■□□□ 1.16
CCDC40-201ENST00000269318 NINLQ9Y2I6 1382 aa22.29■■□□□ 1.16
CCDC40-201ENST00000269318 POGKQ9P215 609 aa22.29■■□□□ 1.16
CCDC40-201ENST00000269318 ABCC11Q96J66 1382 aa22.29■■□□□ 1.16
CCDC40-201ENST00000269318 C3P01024 1663 aa22.29■■□□□ 1.16
CCDC40-201ENST00000269318 SENP3-EIF4A1A0A087X0R7 540 aa22.29■■□□□ 1.16
CCDC40-201ENST00000269318 HDGFP51858 240 aaKnown RBP22.27■■□□□ 1.16
CCDC40-201ENST00000269318 MINK1Q8N4C8 1332 aaPredicted RBP22.27■■□□□ 1.16
CCDC40-201ENST00000269318 FER1L4A9Z1Z3 1794 aa22.26■■□□□ 1.15
CCDC40-201ENST00000269318 ATAD2Q6PL18 1390 aa22.26■■□□□ 1.15
CCDC40-201ENST00000269318 ADAMTS8Q9UP79 889 aa22.26■■□□□ 1.15
CCDC40-201ENST00000269318 METP08581 1390 aa22.26■■□□□ 1.15
CCDC40-201ENST00000269318 CEBPAP49715 358 aaPredicted RBP22.25■■□□□ 1.15
CCDC40-201ENST00000269318 BCANQ96GW7 911 aa22.25■■□□□ 1.15
CCDC40-201ENST00000269318 SRPK2P78362 688 aaKnown RBP22.24■■□□□ 1.15
CCDC40-201ENST00000269318 CGNL1Q0VF96 1302 aa22.23■■□□□ 1.15
CCDC40-201ENST00000269318 PLEKHH1Q9ULM0 1364 aa22.23■■□□□ 1.15
CCDC40-201ENST00000269318 KNDC1Q76NI1 1749 aa22.23■■□□□ 1.15
CCDC40-201ENST00000269318 TECPR2O15040 1411 aa22.22■■□□□ 1.15
CCDC40-201ENST00000269318 A0A1W2PP64 1363 aa22.21■■□□□ 1.15
CCDC40-201ENST00000269318 CD163L1Q9NR16 1453 aa22.21■■□□□ 1.15
CCDC40-201ENST00000269318 NSD2O96028 1365 aa22.21■■□□□ 1.15
CCDC40-201ENST00000269318 WDR43Q15061 677 aaKnown RBP eCLIP22.21■■□□□ 1.15
CCDC40-201ENST00000269318 WAPLQ7Z5K2 1190 aa22.21■■□□□ 1.15
CCDC40-201ENST00000269318 CDK19Q9BWU1 502 aa22.2■■□□□ 1.14
CCDC40-201ENST00000269318 ADAMTS13Q76LX8 1427 aa22.2■■□□□ 1.14
CCDC40-201ENST00000269318 POLR3AO14802 1390 aaPredicted RBP22.2■■□□□ 1.14
CCDC40-201ENST00000269318 PDE3BQ13370 1112 aa22.19■■□□□ 1.14
CCDC40-201ENST00000269318 MORC1Q86VD1 984 aa22.19■■□□□ 1.14
CCDC40-201ENST00000269318 SIRT1Q96EB6 747 aa22.18■■□□□ 1.14
CCDC40-201ENST00000269318 FAM135BQ49AJ0 1406 aa22.18■■□□□ 1.14
CCDC40-201ENST00000269318 PLEKHG1Q9ULL1 1385 aa22.18■■□□□ 1.14
CCDC40-201ENST00000269318 CPS1P31327 1500 aa22.18■■□□□ 1.14
CCDC40-201ENST00000269318 ERICH6BQ5W0A0 696 aa22.18■■□□□ 1.14
CCDC40-201ENST00000269318 SLIT1O75093 1534 aa22.17■■□□□ 1.14
CCDC40-201ENST00000269318 RNF123Q5XPI4 1314 aa22.17■■□□□ 1.14
CCDC40-201ENST00000269318 LTKP29376 864 aa22.17■■□□□ 1.14
CCDC40-201ENST00000269318 IRX6P78412 446 aaPredicted RBP22.17■■□□□ 1.14
CCDC40-201ENST00000269318 ARHGAP23Q9P227 1491 aa22.17■■□□□ 1.14
CCDC40-201ENST00000269318 SALL2Q9Y467 1007 aaPredicted RBP22.16■■□□□ 1.14
CCDC40-201ENST00000269318 TERF2IPQ9NYB0 399 aa22.14■■□□□ 1.14
CCDC40-201ENST00000269318 MED14O60244 1454 aa22.14■■□□□ 1.14
CCDC40-201ENST00000269318 TXNDC2Q86VQ3 553 aa22.13■■□□□ 1.13
CCDC40-201ENST00000269318 SHPRHQ149N8 1683 aa22.12■■□□□ 1.13
CCDC40-201ENST00000269318 CABP1Q9NZU7 370 aa22.1■■□□□ 1.13
CCDC40-201ENST00000269318 ATP7BP35670 1465 aa22.1■■□□□ 1.13
CCDC40-201ENST00000269318 WASLO00401 505 aaPredicted RBP22.1■■□□□ 1.13
CCDC40-201ENST00000269318 TNNT2P45379 298 aaPredicted RBP22.1■■□□□ 1.13
CCDC40-201ENST00000269318 ANKRD26Q9UPS8 1709 aa22.09■■□□□ 1.13
CCDC40-201ENST00000269318 CDCA7LQ96GN5 454 aa22.09■■□□□ 1.13
CCDC40-201ENST00000269318 PELP1Q8IZL8 1130 aaKnown RBP22.08■■□□□ 1.13
CCDC40-201ENST00000269318 ZNF521Q96K83 1311 aa22.08■■□□□ 1.13
CCDC40-201ENST00000269318 HDGFL2Q7Z4V5 671 aaPredicted RBP22.08■■□□□ 1.12
CCDC40-201ENST00000269318 EID1Q9Y6B2 187 aa22.08■■□□□ 1.12
CCDC40-201ENST00000269318 ROBO2Q9HCK4 1378 aa22.08■■□□□ 1.12
CCDC40-201ENST00000269318 FYB1O15117 783 aa22.07■■□□□ 1.12
CCDC40-201ENST00000269318 MTHFSP49914 203 aa22.07■■□□□ 1.12
CCDC40-201ENST00000269318 PLPPR3Q6T4P5 718 aa22.07■■□□□ 1.12
CCDC40-201ENST00000269318 THEMISQ8N1K5 641 aaPredicted RBP22.05■■□□□ 1.12
CCDC40-201ENST00000269318 ADGRB2O60241 1585 aa22.04■■□□□ 1.12
CCDC40-201ENST00000269318 PTPRUQ92729 1446 aa22.04■■□□□ 1.12
CCDC40-201ENST00000269318 CCDC146Q8IYE0 955 aa22.04■■□□□ 1.12
CCDC40-201ENST00000269318 GGNBP2Q9H3C7 697 aa22.04■■□□□ 1.12
CCDC40-201ENST00000269318 RIMS1Q86UR5 1692 aaKnown RBP22.04■■□□□ 1.12
CCDC40-201ENST00000269318 CPSF1Q10570 1443 aaKnown RBP22.04■■□□□ 1.12
CCDC40-201ENST00000269318 KIF20BQ96Q89 1820 aa22.03■■□□□ 1.12
CCDC40-201ENST00000269318 PPP4R2Q9NY27 417 aa22.03■■□□□ 1.12
CCDC40-201ENST00000269318 PPIP5K1Q6PFW1 1433 aa22.02■■□□□ 1.12
CCDC40-201ENST00000269318 CEP170BQ9Y4F5 1589 aaPredicted RBP22.02■■□□□ 1.12
CCDC40-201ENST00000269318 DIP2AQ14689 1571 aa22.02■■□□□ 1.12
CCDC40-201ENST00000269318 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.02■■□□□ 1.11
CCDC40-201ENST00000269318 SLC26A8Q96RN1 970 aa22.01■■□□□ 1.11
CCDC40-201ENST00000269318 RCAN3Q9UKA8 241 aa22.01■■□□□ 1.11
CCDC40-201ENST00000269318 TBX22Q9Y458 520 aa22.01■■□□□ 1.11
CCDC40-201ENST00000269318 ADAMTSL3P82987 1691 aa22.01■■□□□ 1.11
CCDC40-201ENST00000269318 CFAP53Q96M91 514 aa22.01■■□□□ 1.11
CCDC40-201ENST00000269318 APAF1O14727 1248 aa22■■□□□ 1.11
CCDC40-201ENST00000269318 NUDT16Q96DE0 195 aaKnown RBP22■■□□□ 1.11
CCDC40-201ENST00000269318 CDC42BPGQ6DT37 1551 aa21.99■■□□□ 1.11
CCDC40-201ENST00000269318 NGEFQ8N5V2 710 aa21.99■■□□□ 1.11
CCDC40-201ENST00000269318 CCDC61Q9Y6R9 512 aa21.98■■□□□ 1.11
CCDC40-201ENST00000269318 EDC4Q6P2E9 1401 aaKnown RBP21.97■■□□□ 1.11
CCDC40-201ENST00000269318 COL3A1P02461 1466 aaPredicted RBP21.97■■□□□ 1.11
CCDC40-201ENST00000269318 PTCH1Q13635 1447 aa21.97■■□□□ 1.11
CCDC40-201ENST00000269318 PRR36Q9H6K5 1346 aa21.97■■□□□ 1.11
CCDC40-201ENST00000269318 RRP1P56182 461 aaKnown RBP21.96■■□□□ 1.11
CCDC40-201ENST00000269318 GOLGA2Q08379 1002 aa21.96■■□□□ 1.11
CCDC40-201ENST00000269318 IQSEC2Q5JU85 1478 aa21.96■■□□□ 1.11
CCDC40-201ENST00000269318 DUSP27Q5VZP5 1158 aa21.96■■□□□ 1.11
CCDC40-201ENST00000269318 MON2Q7Z3U7 1717 aa21.95■■□□□ 1.11
CCDC40-201ENST00000269318 AMOTL2Q9Y2J4 779 aa21.94■■□□□ 1.1
CCDC40-201ENST00000269318 ZNF142P52746 1687 aaPredicted RBP21.94■■□□□ 1.1
CCDC40-201ENST00000269318 NCKAP5LQ9HCH0 1330 aa21.94■■□□□ 1.1
CCDC40-201ENST00000269318 AKAP12Q02952 1782 aa21.94■■□□□ 1.1
CCDC40-201ENST00000269318 TRMT2AQ8IZ69 625 aaKnown RBP21.94■■□□□ 1.1
CCDC40-201ENST00000269318 RUNDC1Q96C34 613 aa21.94■■□□□ 1.1
CCDC40-201ENST00000269318 TOPAZ1Q8N9V7 1692 aa21.93■■□□□ 1.1
CCDC40-201ENST00000269318 XRN1Q8IZH2 1706 aaKnown RBP21.93■■□□□ 1.1
CCDC40-201ENST00000269318 SLFN5Q08AF3 891 aa21.93■■□□□ 1.1
CCDC40-201ENST00000269318 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.92■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms