RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 NKTRP30414 1462 aaKnown RBP15.16■□□□□ 0.02
USHBP1-201ENST00000252597 HSP90AB1P08238 724 aaKnown RBP15.16■□□□□ 0.02
USHBP1-201ENST00000252597 C22orf23Q9BZE7 217 aa15.16■□□□□ 0.02
USHBP1-201ENST00000252597 CABP2Q9NPB3 220 aa15.16■□□□□ 0.02
USHBP1-201ENST00000252597 EXOSC9Q06265 439 aaKnown RBP15.15■□□□□ 0.02
USHBP1-201ENST00000252597 PDE3AQ14432 1141 aa15.15■□□□□ 0.02
USHBP1-201ENST00000252597 HSCBQ8IWL3 235 aa15.15■□□□□ 0.02
USHBP1-201ENST00000252597 C1orf115Q9H7X2 142 aa15.15■□□□□ 0.02
USHBP1-201ENST00000252597 RAPGEF3O95398 923 aa15.15■□□□□ 0.02
USHBP1-201ENST00000252597 RUNDC1Q96C34 613 aa15.15■□□□□ 0.02
USHBP1-201ENST00000252597 RRAGDQ9NQL2 400 aaPredicted RBP15.15■□□□□ 0.02
USHBP1-201ENST00000252597 ATP7AQ04656 1500 aa15.15■□□□□ 0.02
USHBP1-201ENST00000252597 ZMYM4Q5VZL5 1548 aa15.15■□□□□ 0.02
USHBP1-201ENST00000252597 ARAP3Q8WWN8 1544 aa15.15■□□□□ 0.02
USHBP1-201ENST00000252597 RTEL1-TNFRSF6BF6WH68 1400 aa15.14■□□□□ 0.01
USHBP1-201ENST00000252597 ZNF521Q96K83 1311 aa15.14■□□□□ 0.01
USHBP1-201ENST00000252597 FBLN1P23142 703 aa15.14■□□□□ 0.01
USHBP1-201ENST00000252597 USP19O94966 1318 aa15.14■□□□□ 0.01
USHBP1-201ENST00000252597 DZIP1LQ8IYY4 767 aaKnown RBP15.14■□□□□ 0.01
USHBP1-201ENST00000252597 PNNQ9H307 717 aaKnown RBP15.14■□□□□ 0.01
USHBP1-201ENST00000252597 L1TD1Q5T7N2 865 aaKnown RBP15.13■□□□□ 0.01
USHBP1-201ENST00000252597 IQGAP3Q86VI3 1631 aa15.13■□□□□ 0.01
USHBP1-201ENST00000252597 ZKSCAN2Q63HK3 967 aa15.13■□□□□ 0.01
USHBP1-201ENST00000252597 ARID3AQ99856 593 aa15.13■□□□□ 0.01
USHBP1-201ENST00000252597 KANK1Q14678 1352 aa15.12■□□□□ 0.01
USHBP1-201ENST00000252597 TRIM44Q96DX7 344 aaPredicted RBP15.12■□□□□ 0.01
USHBP1-201ENST00000252597 TRAK2O60296 914 aa15.11■□□□□ 0.01
USHBP1-201ENST00000252597 MYH16Q9H6N6 1097 aa15.11■□□□□ 0.01
USHBP1-201ENST00000252597 EIF3AQ14152 1382 aaKnown RBP15.11■□□□□ 0.01
USHBP1-201ENST00000252597 MCM4P33991 863 aa15.09■□□□□ 0.01
USHBP1-201ENST00000252597 ANKRD45Q5TZF3 282 aa15.09■□□□□ 0.01
USHBP1-201ENST00000252597 FAM43AQ8N2R8 423 aa15.09■□□□□ 0.01
USHBP1-201ENST00000252597 XRCC6P12956 609 aaKnown RBP eCLIP15.09■□□□□ 0.01
USHBP1-201ENST00000252597 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.09■□□□□ 0.01
USHBP1-201ENST00000252597 POLR1AO95602 1720 aaPredicted RBP15.09■□□□□ 0.01
USHBP1-201ENST00000252597 NSD3Q9BZ95 1437 aa15.09■□□□□ 0.01
USHBP1-201ENST00000252597 FOXD4L5Q5VV16 416 aaPredicted RBP15.09■□□□□ 0.01
USHBP1-201ENST00000252597 FOXD4L4Q8WXT5 416 aaPredicted RBP15.09■□□□□ 0.01
USHBP1-201ENST00000252597 THUMPD2Q9BTF0 503 aaKnown RBP15.09■□□□□ 0.01
USHBP1-201ENST00000252597 NOB1Q9ULX3 412 aaKnown RBP15.09■□□□□ 0.01
USHBP1-201ENST00000252597 TBC1D32Q96NH3 1257 aa15.08■□□□□ 0
USHBP1-201ENST00000252597 GPRASP1Q5JY77 1395 aa15.08■□□□□ 0
USHBP1-201ENST00000252597 ZNF518AQ6AHZ1 1483 aa15.07■□□□□ 0
USHBP1-201ENST00000252597 SLC24A1O60721 1099 aa15.07■□□□□ 0
USHBP1-201ENST00000252597 SSH1Q8WYL5 1049 aa15.07■□□□□ 0
USHBP1-201ENST00000252597 RSPH6AQ9H0K4 717 aa15.07■□□□□ 0
USHBP1-201ENST00000252597 RIPK4P57078 832 aa15.07■□□□□ 0
USHBP1-201ENST00000252597 MVPQ14764 893 aaKnown RBP15.07■□□□□ 0
USHBP1-201ENST00000252597 MINK1Q8N4C8 1332 aaPredicted RBP15.07■□□□□ 0
USHBP1-201ENST00000252597 INO80Q9ULG1 1556 aaPredicted RBP15.06■□□□□ 0
USHBP1-201ENST00000252597 SOX12O15370 315 aa15.06■□□□□ 0
USHBP1-201ENST00000252597 HMOX1P09601 288 aa15.06■□□□□ 0
USHBP1-201ENST00000252597 MLECQ14165 292 aa15.06■□□□□ 0
USHBP1-201ENST00000252597 TMEM57Q8N5G2 664 aa15.05■□□□□ 0
USHBP1-201ENST00000252597 CHMP5Q9NZZ3 219 aa15.05■□□□□ 0
USHBP1-201ENST00000252597 PLEKHG5O94827 1062 aa15.05■□□□□ -0
USHBP1-201ENST00000252597 TRMT2AQ8IZ69 625 aaKnown RBP15.05■□□□□ -0
USHBP1-201ENST00000252597 TRIM27P14373 513 aa15.05■□□□□ -0
USHBP1-201ENST00000252597 E9PCH4 1651 aa15.04■□□□□ -0
USHBP1-201ENST00000252597 ASXL1Q8IXJ9 1541 aa15.04■□□□□ -0
USHBP1-201ENST00000252597 ATP10AO60312 1499 aa15.04■□□□□ -0
USHBP1-201ENST00000252597 RBM42Q9BTD8 480 aaKnown RBP15.04■□□□□ -0
USHBP1-201ENST00000252597 RIMBP3CA6NJZ7 1639 aa15.03■□□□□ -0
USHBP1-201ENST00000252597 RIMBP3BA6NNM3 1639 aa15.03■□□□□ -0
USHBP1-201ENST00000252597 RIMBP3Q9UFD9 1639 aa15.03■□□□□ -0
USHBP1-201ENST00000252597 POGZQ7Z3K3 1410 aa15.03■□□□□ -0
USHBP1-201ENST00000252597 SCAF11Q99590 1463 aaKnown RBP15.03■□□□□ -0
USHBP1-201ENST00000252597 KIDINS220Q9ULH0 1771 aa15.03■□□□□ -0
USHBP1-201ENST00000252597 STAG3Q9UJ98 1225 aa15.03■□□□□ -0
USHBP1-201ENST00000252597 FOXD4L6Q3SYB3 417 aaPredicted RBP15.02■□□□□ -0
USHBP1-201ENST00000252597 FOXD4L3Q6VB84 417 aaPredicted RBP15.02■□□□□ -0
USHBP1-201ENST00000252597 VSIG10Q8N0Z9 540 aa15.02□□□□□ -0.01
USHBP1-201ENST00000252597 NOL8Q76FK4 1167 aaKnown RBP15.01□□□□□ -0.01
USHBP1-201ENST00000252597 CFAP65Q6ZU64 1925 aaKnown RBP15□□□□□ -0.01
USHBP1-201ENST00000252597 UGGT1Q9NYU2 1555 aa15□□□□□ -0.01
USHBP1-201ENST00000252597 TRPM1Q7Z4N2 1603 aa15□□□□□ -0.01
USHBP1-201ENST00000252597 ATF7IPQ6VMQ6 1270 aa14.99□□□□□ -0.01
USHBP1-201ENST00000252597 ANTXR1Q9H6X2 564 aa14.99□□□□□ -0.01
USHBP1-201ENST00000252597 DDX19BQ9UMR2 479 aa14.99□□□□□ -0.01
USHBP1-201ENST00000252597 ANP32BQ92688 251 aaKnown RBP14.98□□□□□ -0.01
USHBP1-201ENST00000252597 TMPOP42166 694 aaKnown RBP14.97□□□□□ -0.01
USHBP1-201ENST00000252597 WDR63Q8IWG1 891 aa14.97□□□□□ -0.01
USHBP1-201ENST00000252597 GRPEL1Q9HAV7 217 aa14.97□□□□□ -0.01
USHBP1-201ENST00000252597 PIK3C2GO75747 1445 aa14.97□□□□□ -0.01
USHBP1-201ENST00000252597 DEPDC5O75140 1603 aa14.97□□□□□ -0.01
USHBP1-201ENST00000252597 CLTCL1P53675 1640 aa14.97□□□□□ -0.01
USHBP1-201ENST00000252597 NUTM2FA1L443 756 aa14.97□□□□□ -0.01
USHBP1-201ENST00000252597 TRPM2O94759 1503 aa14.97□□□□□ -0.01
USHBP1-201ENST00000252597 PTPRTO14522 1441 aa14.96□□□□□ -0.01
USHBP1-201ENST00000252597 TET3O43151 1660 aa14.96□□□□□ -0.01
USHBP1-201ENST00000252597 SPHKAPQ2M3C7 1700 aa14.96□□□□□ -0.01
USHBP1-201ENST00000252597 TNPO1Q92973 898 aaKnown RBP14.96□□□□□ -0.01
USHBP1-201ENST00000252597 DDX49Q9Y6V7 483 aaKnown RBP14.96□□□□□ -0.01
USHBP1-201ENST00000252597 PRDM15P57071 1507 aaPredicted RBP14.96□□□□□ -0.02
USHBP1-201ENST00000252597 CFAP74Q9C0B2 1584 aa14.95□□□□□ -0.02
USHBP1-201ENST00000252597 HSP90AA2PQ14568 343 aaPredicted RBP14.95□□□□□ -0.02
USHBP1-201ENST00000252597 MPNDQ8N594 471 aa14.95□□□□□ -0.02
USHBP1-201ENST00000252597 MROH1Q8NDA8 1641 aa14.95□□□□□ -0.02
USHBP1-201ENST00000252597 IPO8O15397 1037 aaKnown RBP14.95□□□□□ -0.02
USHBP1-201ENST00000252597 INSRP06213 1382 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms