RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 ABCA9Q8IUA7 1624 aa17.22■□□□□ 0.35
LDLR-201ENST00000252444 NLRP6P59044 892 aa17.22■□□□□ 0.35
LDLR-201ENST00000252444 ANKRD36BQ8N2N9 1353 aa17.21■□□□□ 0.35
LDLR-201ENST00000252444 TTC21AQ8NDW8 1320 aa17.21■□□□□ 0.35
LDLR-201ENST00000252444 ESCO1Q5FWF5 840 aa17.21■□□□□ 0.34
LDLR-201ENST00000252444 ZNF428Q96B54 188 aa17.21■□□□□ 0.34
LDLR-201ENST00000252444 BCL11AQ9H165 835 aa17.21■□□□□ 0.34
LDLR-201ENST00000252444 NBPF1Q3BBV0 1214 aa17.2■□□□□ 0.34
LDLR-201ENST00000252444 MEX3CQ5U5Q3 659 aaKnown RBP17.2■□□□□ 0.34
LDLR-201ENST00000252444 ZMYM3Q14202 1370 aa17.2■□□□□ 0.34
LDLR-201ENST00000252444 TRPM2O94759 1503 aa17.2■□□□□ 0.34
LDLR-201ENST00000252444 GOLGA6L22H0YM25 854 aa17.2■□□□□ 0.34
LDLR-201ENST00000252444 PPP2R1AP30153 589 aa17.19■□□□□ 0.34
LDLR-201ENST00000252444 ABCC11Q96J66 1382 aa17.19■□□□□ 0.34
LDLR-201ENST00000252444 ZKSCAN2Q63HK3 967 aa17.19■□□□□ 0.34
LDLR-201ENST00000252444 ABTB2Q8N961 1025 aa17.19■□□□□ 0.34
LDLR-201ENST00000252444 WASLO00401 505 aaPredicted RBP17.18■□□□□ 0.34
LDLR-201ENST00000252444 NUDT16Q96DE0 195 aaKnown RBP17.18■□□□□ 0.34
LDLR-201ENST00000252444 SIRT1Q96EB6 747 aa17.17■□□□□ 0.34
LDLR-201ENST00000252444 TCERG1O14776 1098 aaKnown RBP17.17■□□□□ 0.34
LDLR-201ENST00000252444 NEXNQ0ZGT2 675 aa17.17■□□□□ 0.34
LDLR-201ENST00000252444 NCLP19338 710 aaKnown RBP17.17■□□□□ 0.34
LDLR-201ENST00000252444 CHMP4CQ96CF2 233 aa17.17■□□□□ 0.34
LDLR-201ENST00000252444 CADPS2Q86UW7 1296 aa17.16■□□□□ 0.34
LDLR-201ENST00000252444 ITPRIPQ8IWB1 547 aa17.16■□□□□ 0.34
LDLR-201ENST00000252444 LRRFIP1Q32MZ4 808 aaKnown RBP17.16■□□□□ 0.34
LDLR-201ENST00000252444 NSD3Q9BZ95 1437 aa17.16■□□□□ 0.34
LDLR-201ENST00000252444 TTC21BQ7Z4L5 1316 aa17.16■□□□□ 0.34
LDLR-201ENST00000252444 NLRP1Q9C000 1473 aa17.15■□□□□ 0.34
LDLR-201ENST00000252444 SPG7Q9UQ90 795 aa17.15■□□□□ 0.34
LDLR-201ENST00000252444 WDR63Q8IWG1 891 aa17.15■□□□□ 0.34
LDLR-201ENST00000252444 MSH6P52701 1360 aa17.14■□□□□ 0.34
LDLR-201ENST00000252444 NUTM2FA1L443 756 aa17.14■□□□□ 0.33
LDLR-201ENST00000252444 TATP17735 454 aaPredicted RBP17.14■□□□□ 0.33
LDLR-201ENST00000252444 TET3O43151 1660 aa17.14■□□□□ 0.33
LDLR-201ENST00000252444 RIPK4P57078 832 aa17.14■□□□□ 0.33
LDLR-201ENST00000252444 DDX19BQ9UMR2 479 aa17.14■□□□□ 0.33
LDLR-201ENST00000252444 TBX22Q9Y458 520 aa17.14■□□□□ 0.33
LDLR-201ENST00000252444 AMOTL2Q9Y2J4 779 aa17.13■□□□□ 0.33
LDLR-201ENST00000252444 LTV1Q96GA3 475 aaPredicted RBP17.13■□□□□ 0.33
LDLR-201ENST00000252444 CABP1Q9NZU7 370 aa17.13■□□□□ 0.33
LDLR-201ENST00000252444 GLI2P10070 1586 aa17.13■□□□□ 0.33
LDLR-201ENST00000252444 ADGRF5Q8IZF2 1346 aa17.13■□□□□ 0.33
LDLR-201ENST00000252444 CDC42BPAQ5VT25 1732 aa17.13■□□□□ 0.33
LDLR-201ENST00000252444 FCHSD2O94868 740 aa17.12■□□□□ 0.33
LDLR-201ENST00000252444 MYOM2P54296 1465 aa17.12■□□□□ 0.33
LDLR-201ENST00000252444 CROCC2H7BZ55 1655 aa17.12■□□□□ 0.33
LDLR-201ENST00000252444 HSP90AB4PQ58FF6 505 aa17.12■□□□□ 0.33
LDLR-201ENST00000252444 ARHGAP31Q2M1Z3 1444 aa17.12■□□□□ 0.33
LDLR-201ENST00000252444 PTMSP20962 102 aa17.11■□□□□ 0.33
LDLR-201ENST00000252444 CCDC146Q8IYE0 955 aa17.11■□□□□ 0.33
LDLR-201ENST00000252444 GGNBP2Q9H3C7 697 aa17.11■□□□□ 0.33
LDLR-201ENST00000252444 ZFYVE9O95405 1425 aa17.1■□□□□ 0.33
LDLR-201ENST00000252444 MTHFSP49914 203 aa17.1■□□□□ 0.33
LDLR-201ENST00000252444 IQGAP3Q86VI3 1631 aa17.1■□□□□ 0.33
LDLR-201ENST00000252444 FBXO31Q5XUX0 539 aaPredicted RBP17.09■□□□□ 0.33
LDLR-201ENST00000252444 PHF8Q9UPP1 1060 aa17.09■□□□□ 0.33
LDLR-201ENST00000252444 CENPQQ7L2Z9 268 aaPredicted RBP17.09■□□□□ 0.33
LDLR-201ENST00000252444 ANO8Q9HCE9 1232 aaPredicted RBP17.09■□□□□ 0.33
LDLR-201ENST00000252444 UNC13BO14795 1591 aa17.08■□□□□ 0.33
LDLR-201ENST00000252444 SLC26A8Q96RN1 970 aa17.08■□□□□ 0.33
LDLR-201ENST00000252444 ASXL1Q8IXJ9 1541 aa17.08■□□□□ 0.32
LDLR-201ENST00000252444 AMOTQ4VCS5 1084 aa17.07■□□□□ 0.32
LDLR-201ENST00000252444 TAF7LQ5H9L4 462 aa17.07■□□□□ 0.32
LDLR-201ENST00000252444 APAF1O14727 1248 aa17.07■□□□□ 0.32
LDLR-201ENST00000252444 KIAA1211Q6ZU35 1233 aa17.07■□□□□ 0.32
LDLR-201ENST00000252444 IRX6P78412 446 aaPredicted RBP17.06■□□□□ 0.32
LDLR-201ENST00000252444 RRP1P56182 461 aaKnown RBP17.06■□□□□ 0.32
LDLR-201ENST00000252444 NLRP2Q9NX02 1062 aa17.06■□□□□ 0.32
LDLR-201ENST00000252444 NPC1L1Q9UHC9 1359 aa17.05■□□□□ 0.32
LDLR-201ENST00000252444 CCDC30Q5VVM6 783 aa17.05■□□□□ 0.32
LDLR-201ENST00000252444 TSPYL4Q9UJ04 414 aa17.05■□□□□ 0.32
LDLR-201ENST00000252444 SLC12A5Q9H2X9 1139 aa17.05■□□□□ 0.32
LDLR-201ENST00000252444 KCNJ4P48050 445 aa17.04■□□□□ 0.32
LDLR-201ENST00000252444 YTHDC2Q9H6S0 1430 aaKnown RBP17.04■□□□□ 0.32
LDLR-201ENST00000252444 EFCAB6Q5THR3 1501 aa17.04■□□□□ 0.32
LDLR-201ENST00000252444 PTPRTO14522 1441 aa17.03■□□□□ 0.32
LDLR-201ENST00000252444 KIF1BO60333 1816 aa17.02■□□□□ 0.32
LDLR-201ENST00000252444 PIK3R4Q99570 1358 aa17.02■□□□□ 0.32
LDLR-201ENST00000252444 NPHP3Q7Z494 1330 aa17.02■□□□□ 0.31
LDLR-201ENST00000252444 SBNO2Q9Y2G9 1366 aa17.02■□□□□ 0.31
LDLR-201ENST00000252444 KDM6BO15054 1643 aa17.01■□□□□ 0.31
LDLR-201ENST00000252444 LMTK2Q8IWU2 1503 aa17.01■□□□□ 0.31
LDLR-201ENST00000252444 DZIP1LQ8IYY4 767 aaKnown RBP17.01■□□□□ 0.31
LDLR-201ENST00000252444 HSCBQ8IWL3 235 aa17■□□□□ 0.31
LDLR-201ENST00000252444 TMEM2Q9UHN6 1383 aa17■□□□□ 0.31
LDLR-201ENST00000252444 ZC3H13Q5T200 1668 aaKnown RBP17■□□□□ 0.31
LDLR-201ENST00000252444 INSRP06213 1382 aa17■□□□□ 0.31
LDLR-201ENST00000252444 PIK3C2GO75747 1445 aa17■□□□□ 0.31
LDLR-201ENST00000252444 COL17A1Q9UMD9 1497 aaPredicted RBP17■□□□□ 0.31
LDLR-201ENST00000252444 GORABQ5T7V8 394 aa16.99■□□□□ 0.31
LDLR-201ENST00000252444 RIMBP3CA6NJZ7 1639 aa16.99■□□□□ 0.31
LDLR-201ENST00000252444 RIMBP3BA6NNM3 1639 aa16.99■□□□□ 0.31
LDLR-201ENST00000252444 RIMBP3Q9UFD9 1639 aa16.99■□□□□ 0.31
LDLR-201ENST00000252444 ERCC6L2Q5T890 1561 aa16.99■□□□□ 0.31
LDLR-201ENST00000252444 PLEKHG1Q9ULL1 1385 aa16.98■□□□□ 0.31
LDLR-201ENST00000252444 NPATQ14207 1427 aa16.98■□□□□ 0.31
LDLR-201ENST00000252444 ABCC3O15438 1527 aa16.98■□□□□ 0.31
LDLR-201ENST00000252444 KDM5CP41229 1560 aa16.98■□□□□ 0.31
LDLR-201ENST00000252444 GNAI3P08754 354 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms