RNA–Protein interactions for RNA: ENST00000228251.8

YBX3-201, Transcript of Y-box binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene YBX3, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-201ENST00000228251 DLC1Q96QB1 1528 aa25.5■■□□□ 1.67
YBX3-201ENST00000228251 NINLQ9Y2I6 1382 aa25.48■■□□□ 1.67
YBX3-201ENST00000228251 RCAN3Q9UKA8 241 aa25.47■■□□□ 1.67
YBX3-201ENST00000228251 RIMS2Q9UQ26 1411 aa25.46■■□□□ 1.67
YBX3-201ENST00000228251 RRP1P56182 461 aaKnown RBP25.46■■□□□ 1.67
YBX3-201ENST00000228251 DNAJC5Q9H3Z4 198 aa25.46■■□□□ 1.67
YBX3-201ENST00000228251 NSD2O96028 1365 aa25.45■■□□□ 1.66
YBX3-201ENST00000228251 B4GALNT3Q6L9W6 998 aa25.45■■□□□ 1.66
YBX3-201ENST00000228251 ANKRD26Q9UPS8 1709 aa25.45■■□□□ 1.66
YBX3-201ENST00000228251 ZMYM3Q14202 1370 aa25.43■■□□□ 1.66
YBX3-201ENST00000228251 CD163L1Q9NR16 1453 aa25.42■■□□□ 1.66
YBX3-201ENST00000228251 CGNL1Q0VF96 1302 aa25.41■■□□□ 1.66
YBX3-201ENST00000228251 CABP2Q9NPB3 220 aa25.41■■□□□ 1.66
YBX3-201ENST00000228251 STK26Q9P289 416 aa25.41■■□□□ 1.66
YBX3-201ENST00000228251 MLECQ14165 292 aa25.4■■□□□ 1.66
YBX3-201ENST00000228251 ABCC11Q96J66 1382 aa25.4■■□□□ 1.66
YBX3-201ENST00000228251 KNDC1Q76NI1 1749 aa25.39■■□□□ 1.66
YBX3-201ENST00000228251 UBR1Q8IWV7 1749 aa25.39■■□□□ 1.66
YBX3-201ENST00000228251 PRAM1Q96QH2 718 aa25.39■■□□□ 1.66
YBX3-201ENST00000228251 ATAD2Q6PL18 1390 aa25.39■■□□□ 1.66
YBX3-201ENST00000228251 A0A1W2PP64 1363 aa25.38■■□□□ 1.65
YBX3-201ENST00000228251 MORC1Q86VD1 984 aa25.38■■□□□ 1.65
YBX3-201ENST00000228251 STAG3Q9UJ98 1225 aa25.38■■□□□ 1.65
YBX3-201ENST00000228251 MED14O60244 1454 aa25.36■■□□□ 1.65
YBX3-201ENST00000228251 NLRP1Q9C000 1473 aa25.36■■□□□ 1.65
YBX3-201ENST00000228251 SAFB2Q14151 953 aaKnown RBP eCLIP25.36■■□□□ 1.65
YBX3-201ENST00000228251 DUSP27Q5VZP5 1158 aa25.36■■□□□ 1.65
YBX3-201ENST00000228251 TRMT2AQ8IZ69 625 aaKnown RBP25.36■■□□□ 1.65
YBX3-201ENST00000228251 RBM19Q9Y4C8 960 aaKnown RBP25.34■■□□□ 1.65
YBX3-201ENST00000228251 NGEFQ8N5V2 710 aa25.33■■□□□ 1.65
YBX3-201ENST00000228251 IQSEC2Q5JU85 1478 aa25.33■■□□□ 1.64
YBX3-201ENST00000228251 MINK1Q8N4C8 1332 aaPredicted RBP25.33■■□□□ 1.64
YBX3-201ENST00000228251 KIF20BQ96Q89 1820 aa25.32■■□□□ 1.64
YBX3-201ENST00000228251 TNRQ92752 1358 aa25.32■■□□□ 1.64
YBX3-201ENST00000228251 CCDC146Q8IYE0 955 aa25.31■■□□□ 1.64
YBX3-201ENST00000228251 SENP3Q9H4L4 574 aaPredicted RBP25.31■■□□□ 1.64
YBX3-201ENST00000228251 GOLGA2Q08379 1002 aa25.31■■□□□ 1.64
YBX3-201ENST00000228251 SLFN5Q08AF3 891 aa25.31■■□□□ 1.64
YBX3-201ENST00000228251 POGKQ9P215 609 aa25.31■■□□□ 1.64
YBX3-201ENST00000228251 APAF1O14727 1248 aa25.3■■□□□ 1.64
YBX3-201ENST00000228251 SRPK2P78362 688 aaKnown RBP25.29■■□□□ 1.64
YBX3-201ENST00000228251 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.29■■□□□ 1.64
YBX3-201ENST00000228251 TECPR2O15040 1411 aa25.29■■□□□ 1.64
YBX3-201ENST00000228251 CPS1P31327 1500 aa25.28■■□□□ 1.64
YBX3-201ENST00000228251 COL3A1P02461 1466 aaPredicted RBP25.26■■□□□ 1.64
YBX3-201ENST00000228251 EXOC6Q8TAG9 804 aa25.26■■□□□ 1.63
YBX3-201ENST00000228251 CCDC136Q96JN2 1154 aa25.26■■□□□ 1.63
YBX3-201ENST00000228251 METP08581 1390 aa25.26■■□□□ 1.63
YBX3-201ENST00000228251 MTHFSP49914 203 aa25.26■■□□□ 1.63
YBX3-201ENST00000228251 CDK19Q9BWU1 502 aa25.26■■□□□ 1.63
YBX3-201ENST00000228251 ATP7BP35670 1465 aa25.25■■□□□ 1.63
YBX3-201ENST00000228251 ESF1Q9H501 851 aaKnown RBP25.25■■□□□ 1.63
YBX3-201ENST00000228251 ADGRB2O60241 1585 aa25.24■■□□□ 1.63
YBX3-201ENST00000228251 TMEM2Q9UHN6 1383 aa25.24■■□□□ 1.63
YBX3-201ENST00000228251 TERF2IPQ9NYB0 399 aa25.23■■□□□ 1.63
YBX3-201ENST00000228251 FAM135BQ49AJ0 1406 aa25.23■■□□□ 1.63
YBX3-201ENST00000228251 TNNT2P45379 298 aaPredicted RBP25.23■■□□□ 1.63
YBX3-201ENST00000228251 SPINK5Q9NQ38 1064 aaPredicted RBP25.23■■□□□ 1.63
YBX3-201ENST00000228251 C3P01024 1663 aa25.22■■□□□ 1.63
YBX3-201ENST00000228251 PHF23Q9BUL5 403 aaPredicted RBP25.22■■□□□ 1.63
YBX3-201ENST00000228251 NKTRP30414 1462 aaKnown RBP25.22■■□□□ 1.63
YBX3-201ENST00000228251 SIRT1Q96EB6 747 aa25.21■■□□□ 1.63
YBX3-201ENST00000228251 WAPLQ7Z5K2 1190 aa25.21■■□□□ 1.63
YBX3-201ENST00000228251 FYB1O15117 783 aa25.2■■□□□ 1.62
YBX3-201ENST00000228251 DMRT2Q9Y5R5 561 aa25.19■■□□□ 1.62
YBX3-201ENST00000228251 ADAMTS13Q76LX8 1427 aa25.19■■□□□ 1.62
YBX3-201ENST00000228251 NCBP3Q53F19 620 aaKnown RBP25.18■■□□□ 1.62
YBX3-201ENST00000228251 RUNDC1Q96C34 613 aa25.18■■□□□ 1.62
YBX3-201ENST00000228251 CFAP53Q96M91 514 aa25.18■■□□□ 1.62
YBX3-201ENST00000228251 E9PSI1 815 aa25.18■■□□□ 1.62
YBX3-201ENST00000228251 PLIN1O60240 522 aa25.18■■□□□ 1.62
YBX3-201ENST00000228251 MON2Q7Z3U7 1717 aa25.17■■□□□ 1.62
YBX3-201ENST00000228251 WWC1Q8IX03 1113 aa25.16■■□□□ 1.62
YBX3-201ENST00000228251 CPSF1Q10570 1443 aaKnown RBP25.16■■□□□ 1.62
YBX3-201ENST00000228251 FER1L4A9Z1Z3 1794 aa25.16■■□□□ 1.62
YBX3-201ENST00000228251 CABP1Q9NZU7 370 aa25.16■■□□□ 1.62
YBX3-201ENST00000228251 AKAP12Q02952 1782 aa25.15■■□□□ 1.62
YBX3-201ENST00000228251 HDGFP51858 240 aaKnown RBP25.15■■□□□ 1.62
YBX3-201ENST00000228251 HDGFL2Q7Z4V5 671 aaPredicted RBP25.15■■□□□ 1.62
YBX3-201ENST00000228251 GGNBP2Q9H3C7 697 aa25.15■■□□□ 1.62
YBX3-201ENST00000228251 TRHP20396 242 aaPredicted RBP25.14■■□□□ 1.62
YBX3-201ENST00000228251 CDC42BPGQ6DT37 1551 aa25.14■■□□□ 1.61
YBX3-201ENST00000228251 PNPLA6Q8IY17 1366 aa25.14■■□□□ 1.61
YBX3-201ENST00000228251 PLEKHG1Q9ULL1 1385 aa25.12■■□□□ 1.61
YBX3-201ENST00000228251 ARHGAP23Q9P227 1491 aa25.12■■□□□ 1.61
YBX3-201ENST00000228251 SLIT1O75093 1534 aa25.12■■□□□ 1.61
YBX3-201ENST00000228251 CCDC27Q2M243 656 aa25.12■■□□□ 1.61
YBX3-201ENST00000228251 CRBNQ96SW2 442 aa25.12■■□□□ 1.61
YBX3-201ENST00000228251 WASLO00401 505 aaPredicted RBP25.11■■□□□ 1.61
YBX3-201ENST00000228251 TCP11L2Q8N4U5 519 aa25.11■■□□□ 1.61
YBX3-201ENST00000228251 C20orf194Q5TEA3 1177 aa25.1■■□□□ 1.61
YBX3-201ENST00000228251 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.1■■□□□ 1.61
YBX3-201ENST00000228251 TOPAZ1Q8N9V7 1692 aa25.09■■□□□ 1.61
YBX3-201ENST00000228251 ITSN1Q15811 1721 aa25.09■■□□□ 1.61
YBX3-201ENST00000228251 EDC4Q6P2E9 1401 aaKnown RBP25.08■■□□□ 1.61
YBX3-201ENST00000228251 PPIP5K1Q6PFW1 1433 aa25.08■■□□□ 1.61
YBX3-201ENST00000228251 FANCIQ9NVI1 1328 aa25.08■■□□□ 1.6
YBX3-201ENST00000228251 MAP2P11137 1827 aaKnown RBP25.07■■□□□ 1.6
YBX3-201ENST00000228251 TXNDC2Q86VQ3 553 aa25.07■■□□□ 1.6
YBX3-201ENST00000228251 ROBO2Q9HCK4 1378 aa25.06■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms