RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Ric3Q8BPM6 367 aa19.2■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Slc52a2Q9D8F3 450 aa19.2■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 MecomP14404 1042 aa19.2■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Tspyl2Q7TQI8 677 aa19.2■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Cald1E9QA15 768 aaKnown RBP19.19■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Rab11fip3Q8CHD8 1047 aa19.19■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 AampJ3QN89 436 aa19.19■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Nol10Q5RJG1 687 aaKnown RBP19.19■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Atxn3Q9CVD2 355 aa19.18■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Gm973E9Q295 1059 aa19.17■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Rabep1O35551 862 aa19.17■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Mug2P28666 1451 aa19.17■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Kdm5bQ80Y84 1544 aa19.17■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Pknox2Q8BG99 474 aa19.16■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Mapkbp1Q6NS57 1503 aa19.16■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 OvosQ3UU35 1456 aa19.16■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Ppp2r3aB2RXC8 1150 aa19.16■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Chmp3Q9CQ10 224 aa19.16■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Taok2Q6ZQ29 1240 aa19.15■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Ssh2Q5SW75 1423 aa19.15■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Adcy10Q8C0T9 1614 aa19.15■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Kdm3bQ6ZPY7 1562 aa19.14■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 MpripP97434 1024 aa19.14■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Arhgef12Q8R4H2 1543 aaKnown RBP19.13■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Pcmtd1P59913 357 aa19.13■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Rsph3aQ3UFY4 516 aa19.13■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 SlkO54988 1233 aa19.13■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 VgfQ0VGU4 617 aa19.12■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Kank1E9Q238 1360 aa19.12■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 RalgapbQ8BQZ4 1484 aa19.12■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Q8BT18 775 aa19.12■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Iffo2Q8R2V2 512 aa19.11■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 TatQ8QZR1 454 aa19.11■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Ythdc2B2RR83 1445 aaKnown RBP19.11■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 HnrnpmQ9D0E1 729 aaKnown RBP19.11■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Ccdc171E9Q1U1 1324 aa19.1■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 SkilQ60665 675 aa19.1■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Tnpo1Q8BFY9 898 aaKnown RBP19.1■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Cabp2Q9JLK4 216 aa19.1■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 PalmQ9Z0P4 383 aa19.1■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Gsdma3Q5Y4Y6 464 aa19.1■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Liat1Q810M6 228 aa19.09■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Chmp7Q8R1T1 451 aa19.09■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Cdk13Q69ZA1 1511 aaKnown RBP19.09■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Becn1O88597 448 aa19.09■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Nek4Q9Z1J2 792 aa19.09■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Nup160Q9Z0W3 1402 aaKnown RBP19.08■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Sv2bQ8BG39 683 aa19.07■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Calcoco2A2A6M5 331 aa19.06■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Smarce1O54941 411 aaKnown RBP19.06■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Map4k4P97820 1233 aaKnown RBP19.06■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 CgnP59242 1191 aa19.06■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Abca5Q8K448 1642 aa19.06■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Naip6Q9JIB6 1403 aa19.05■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Q9D2X8 372 aa19.05■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Cetn4Q8K4K1 168 aa19.04■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Casq1O09165 405 aa19.04■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Ush1cQ9ES64 910 aa19.04■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 IbtkQ6ZPR6 1352 aaKnown RBP19.04■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Chmp4cQ9D7F7 232 aa19.03■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Zranb1Q7M760 708 aa19.03■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Bcl2l13P59017 434 aa19.02■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Pdcl3Q8BVF2 240 aa19.02■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Smc5Q8CG46 1101 aaKnown RBP19.02■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Atp6v1dP57746 247 aa19.02■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Cog6Q8R3I3 657 aa19.02■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Dennd6aQ8BH65 605 aa19.02■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 AppP12023 770 aa19.01■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Maco1Q7TQE6 664 aaKnown RBP19.01■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Plcd4Q8K3R3 807 aa19.01■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Cpsf1Q9EPU4 1441 aaKnown RBP19.01■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 HypkQ9CR41 129 aa19.01■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Zmym4A2A791 1549 aaKnown RBP19.01■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Stk11ipQ3TAA7 1072 aa19.01■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Cdc37l1Q9CZP7 335 aa19.01■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Gm10471E9Q1C7 252 aa19■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 RdxP26043 583 aaKnown RBP19■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Pip4k2bQ80XI4 416 aa19■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Tceal9Q9DD24 104 aa19■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Cfdp1O88271 295 aaKnown RBP18.99■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Atf3Q60765 181 aa18.99■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Kif18aQ91WD7 886 aa18.99■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Fchsd2Q3USJ8 740 aa18.98■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Phactr2B1AVP0 632 aa18.98■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Filip1lQ6P6L0 1131 aa18.98■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Abcc1O35379 1528 aa18.97■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Gm156Q58A37 223 aa18.97■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Evi5lH3BKQ3 813 aa18.97■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Kiaa0754Q69ZZ9 979 aa18.97■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Uspl1Q3ULM6 1089 aa18.96■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 PtprgQ05909 1442 aa18.96■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Hmox1P14901 289 aa18.96■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Anapc15P60007 132 aa18.96■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Ggnbp2Q5SV77 696 aa18.95■□□□□ 0.62
Ccdc88b-201ENSMUST00000113440 Larp1bA0A0A6YXJ7 370 aaKnown RBP18.95■□□□□ 0.62
Ccdc88b-201ENSMUST00000113440 Slc12a5Q91V14 1138 aa18.95■□□□□ 0.62
Ccdc88b-201ENSMUST00000113440 Cyp46a1Q9WVK8 500 aa18.95■□□□□ 0.62
Ccdc88b-201ENSMUST00000113440 Gcc2Q8CHG3 1679 aa18.95■□□□□ 0.62
Ccdc88b-201ENSMUST00000113440 St18Q80TY4 1045 aa18.94■□□□□ 0.62
Ccdc88b-201ENSMUST00000113440 Gprasp1Q5U4C1 1347 aa18.94■□□□□ 0.62
Retrieved 100 of 22,080 RNA–protein pairs in 58 ms