RNA–Protein interactions for RNA: ENSMUST00000005705.7

Trim28-201, Transcript of Transcription intermediary factor 1-beta, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim28, Length 3,245 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28-201ENSMUST00000005705 Exosc9Q9JHI7 438 aaKnown RBP20.82■□□□□ 0.92
Trim28-201ENSMUST00000005705 Ipo8Q7TMY7 1010 aa20.82■□□□□ 0.92
Trim28-201ENSMUST00000005705 Puf60Q3UEB3 564 aaKnown RBP20.81■□□□□ 0.92
Trim28-201ENSMUST00000005705 Rab3gap2Q8BMG7 1366 aa20.81■□□□□ 0.92
Trim28-201ENSMUST00000005705 Plch2A2AP18 1501 aa20.81■□□□□ 0.92
Trim28-201ENSMUST00000005705 Zfyve16Q80U44 1528 aa20.8■□□□□ 0.92
Trim28-201ENSMUST00000005705 Gm16486A0A1D5RMD1 1434 aa20.8■□□□□ 0.92
Trim28-201ENSMUST00000005705 TnikP83510 1323 aa20.79■□□□□ 0.92
Trim28-201ENSMUST00000005705 Smc5Q8CG46 1101 aaKnown RBP20.79■□□□□ 0.92
Trim28-201ENSMUST00000005705 Nectin2P32507 530 aa20.79■□□□□ 0.92
Trim28-201ENSMUST00000005705 Abca17E9PX95 1733 aa20.78■□□□□ 0.92
Trim28-201ENSMUST00000005705 Plekhh1Q80TI1 1356 aa20.78■□□□□ 0.92
Trim28-201ENSMUST00000005705 Nos1Q9Z0J4 1429 aa20.77■□□□□ 0.92
Trim28-201ENSMUST00000005705 Tex14Q7M6U3 1450 aa20.77■□□□□ 0.92
Trim28-201ENSMUST00000005705 Aplp1Q03157 653 aa20.77■□□□□ 0.92
Trim28-201ENSMUST00000005705 Myo5cE9Q1F5 1742 aa20.76■□□□□ 0.91
Trim28-201ENSMUST00000005705 Abca6Q8K441 1624 aa20.76■□□□□ 0.91
Trim28-201ENSMUST00000005705 Abca9Q8K449 1623 aa20.76■□□□□ 0.91
Trim28-201ENSMUST00000005705 Sbno1Q689Z5 1390 aa20.76■□□□□ 0.91
Trim28-201ENSMUST00000005705 Tmco5bQ80X59 307 aa20.75■□□□□ 0.91
Trim28-201ENSMUST00000005705 AatkQ80YE4 1365 aa20.75■□□□□ 0.91
Trim28-201ENSMUST00000005705 Tsen2Q6P7W5 460 aa20.75■□□□□ 0.91
Trim28-201ENSMUST00000005705 Rlbp1Q9Z275 317 aa20.75■□□□□ 0.91
Trim28-201ENSMUST00000005705 Ccdc183A2AJB1 534 aa20.74■□□□□ 0.91
Trim28-201ENSMUST00000005705 Q4VA45 678 aa20.74■□□□□ 0.91
Trim28-201ENSMUST00000005705 Myo3aQ8K3H5 1613 aa20.72■□□□□ 0.91
Trim28-201ENSMUST00000005705 P2rx7Q9Z1M0 595 aa20.72■□□□□ 0.91
Trim28-201ENSMUST00000005705 Ptch1Q61115 1434 aa20.71■□□□□ 0.91
Trim28-201ENSMUST00000005705 1700019A02RikA0A087WPV9 146 aa20.71■□□□□ 0.91
Trim28-201ENSMUST00000005705 Mfap1aC0HKD8 439 aaKnown RBP20.71■□□□□ 0.91
Trim28-201ENSMUST00000005705 Mfap1bC0HKD9 439 aaKnown RBP20.71■□□□□ 0.91
Trim28-201ENSMUST00000005705 GsdmaQ9EST1 446 aa20.71■□□□□ 0.91
Trim28-201ENSMUST00000005705 Znf518aB2RRF6 1478 aaKnown RBP20.71■□□□□ 0.91
Trim28-201ENSMUST00000005705 Uggt2E9Q4X2 1504 aa20.7■□□□□ 0.9
Trim28-201ENSMUST00000005705 Mapk8ip3Q9ESN9 1337 aa20.7■□□□□ 0.9
Trim28-201ENSMUST00000005705 AnkarA2RT91 1465 aa20.7■□□□□ 0.9
Trim28-201ENSMUST00000005705 Zfp777B9EKF4 885 aa20.69■□□□□ 0.9
Trim28-201ENSMUST00000005705 Birc3O08863 600 aa20.68■□□□□ 0.9
Trim28-201ENSMUST00000005705 OvosQ3UU35 1456 aa20.68■□□□□ 0.9
Trim28-201ENSMUST00000005705 Pabpn1Q8CCS6 302 aaKnown RBP20.67■□□□□ 0.9
Trim28-201ENSMUST00000005705 Duxf3A0A0N4SV92 674 aa20.66■□□□□ 0.9
Trim28-201ENSMUST00000005705 Dnttip2Q8R2M2 758 aaKnown RBP20.66■□□□□ 0.9
Trim28-201ENSMUST00000005705 Pola1P33609 1465 aa20.65■□□□□ 0.9
Trim28-201ENSMUST00000005705 Fndc1E9Q043 1732 aa20.65■□□□□ 0.9
Trim28-201ENSMUST00000005705 Iqgap3F8VQ29 1632 aa20.65■□□□□ 0.9
Trim28-201ENSMUST00000005705 Pibf1E9Q6K3 756 aa20.65■□□□□ 0.9
Trim28-201ENSMUST00000005705 Stk11ipQ3TAA7 1072 aa20.65■□□□□ 0.9
Trim28-201ENSMUST00000005705 IqubQ8CDK3 788 aa20.65■□□□□ 0.9
Trim28-201ENSMUST00000005705 Col17a1Q07563 1470 aa20.64■□□□□ 0.89
Trim28-201ENSMUST00000005705 Stard8Q8K031 1019 aa20.64■□□□□ 0.89
Trim28-201ENSMUST00000005705 Shq1Q7TMX5 569 aa20.63■□□□□ 0.89
Trim28-201ENSMUST00000005705 AU022751B1B0V2 589 aa20.63■□□□□ 0.89
Trim28-201ENSMUST00000005705 Tnpo1Q8BFY9 898 aaKnown RBP20.63■□□□□ 0.89
Trim28-201ENSMUST00000005705 NgefQ8CHT1 710 aa20.63■□□□□ 0.89
Trim28-201ENSMUST00000005705 Gli2Q0VGT2 1544 aa20.62■□□□□ 0.89
Trim28-201ENSMUST00000005705 Ppp1r9bQ6R891 817 aaKnown RBP20.62■□□□□ 0.89
Trim28-201ENSMUST00000005705 Prex1Q69ZK0 1650 aa20.62■□□□□ 0.89
Trim28-201ENSMUST00000005705 Irx6Q9ER75 438 aa20.62■□□□□ 0.89
Trim28-201ENSMUST00000005705 Usp19Q3UJD6 1360 aa20.61■□□□□ 0.89
Trim28-201ENSMUST00000005705 Dusp27Q148W8 1138 aa20.61■□□□□ 0.89
Trim28-201ENSMUST00000005705 Uspl1Q3ULM6 1089 aa20.61■□□□□ 0.89
Trim28-201ENSMUST00000005705 GorabQ8BRM2 368 aa20.61■□□□□ 0.89
Trim28-201ENSMUST00000005705 Ccdc60Q8C4J0 545 aa20.61■□□□□ 0.89
Trim28-201ENSMUST00000005705 Kiaa1107Q80TK0 1369 aa20.61■□□□□ 0.89
Trim28-201ENSMUST00000005705 Q9D9H8 365 aa20.61■□□□□ 0.89
Trim28-201ENSMUST00000005705 U2surpQ6NV83 1029 aaKnown RBP20.6■□□□□ 0.89
Trim28-201ENSMUST00000005705 Nphp4P59240 1425 aa20.59■□□□□ 0.89
Trim28-201ENSMUST00000005705 Htatsf1Q8BGC0 757 aa20.59■□□□□ 0.89
Trim28-201ENSMUST00000005705 Itsn2Q9Z0R6 1659 aa20.59■□□□□ 0.89
Trim28-201ENSMUST00000005705 Kdm5aQ3UXZ9 1690 aa20.58■□□□□ 0.89
Trim28-201ENSMUST00000005705 Atf7ipQ7TT18 1306 aa20.58■□□□□ 0.88
Trim28-201ENSMUST00000005705 Cep152A2AUM9 1736 aaKnown RBP20.57■□□□□ 0.88
Trim28-201ENSMUST00000005705 Rims1Q99NE5 1463 aa20.56■□□□□ 0.88
Trim28-201ENSMUST00000005705 Gm156Q58A37 223 aa20.56■□□□□ 0.88
Trim28-201ENSMUST00000005705 Trim58Q5NCC9 485 aa20.56■□□□□ 0.88
Trim28-201ENSMUST00000005705 Rfx1P48377 963 aa20.55■□□□□ 0.88
Trim28-201ENSMUST00000005705 Kcnn1Q9EQR3 537 aa20.55■□□□□ 0.88
Trim28-201ENSMUST00000005705 Ralbp1Q62172 648 aa20.55■□□□□ 0.88
Trim28-201ENSMUST00000005705 Utp14aQ640M1 767 aaKnown RBP20.55■□□□□ 0.88
Trim28-201ENSMUST00000005705 Tmem131lQ3U3D7 1597 aa20.54■□□□□ 0.88
Trim28-201ENSMUST00000005705 Abca8aQ8K442 1620 aa20.54■□□□□ 0.88
Trim28-201ENSMUST00000005705 Cdk5rap2Q8K389 1822 aa20.54■□□□□ 0.88
Trim28-201ENSMUST00000005705 AampJ3QN89 436 aa20.53■□□□□ 0.88
Trim28-201ENSMUST00000005705 Mcm10Q0VBD2 885 aa20.53■□□□□ 0.88
Trim28-201ENSMUST00000005705 DekQ7TNV0 380 aaKnown RBP20.53■□□□□ 0.88
Trim28-201ENSMUST00000005705 Adgrb3Q80ZF8 1522 aa20.53■□□□□ 0.88
Trim28-201ENSMUST00000005705 AU015836B2RUM3 263 aa20.52■□□□□ 0.88
Trim28-201ENSMUST00000005705 Cald1E9QA15 768 aaKnown RBP20.52■□□□□ 0.88
Trim28-201ENSMUST00000005705 Chmp4cQ9D7F7 232 aa20.52■□□□□ 0.88
Trim28-201ENSMUST00000005705 AU019823E9PUQ3 292 aa20.51■□□□□ 0.87
Trim28-201ENSMUST00000005705 Plcb2A3KGF7 1181 aa20.5■□□□□ 0.87
Trim28-201ENSMUST00000005705 Sptbn5F6UCX4 1208 aa20.5■□□□□ 0.87
Trim28-201ENSMUST00000005705 Ttc41Q692V3 1318 aa20.5■□□□□ 0.87
Trim28-201ENSMUST00000005705 Ppp2r3aB2RXC8 1150 aa20.49■□□□□ 0.87
Trim28-201ENSMUST00000005705 Asxl2Q8BZ32 1370 aa20.48■□□□□ 0.87
Trim28-201ENSMUST00000005705 Efcab6Q6P1E8 1516 aa20.48■□□□□ 0.87
Trim28-201ENSMUST00000005705 Ehbp1l1Q99MS7 1716 aa20.48■□□□□ 0.87
Trim28-201ENSMUST00000005705 Maco1Q7TQE6 664 aaKnown RBP20.48■□□□□ 0.87
Trim28-201ENSMUST00000005705 CenpjQ569L8 1344 aa20.47■□□□□ 0.87
Trim28-201ENSMUST00000005705 Lrrc7Q80TE7 1490 aa20.47■□□□□ 0.87
Retrieved 100 of 22,080 RNA–protein pairs in 16.7 ms