RNA–Protein interactions for RNA: YMR123W

PKR1, Transcript of V-ATPase assembly factor, yeast

Gene PKR1, Length 369 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PKR1	YMR123W	RPS22B	Q3E7Y3	130 aa	Known RBP	0.69	□□□□□ -2.3
PKR1	YMR123W	YNL042W-B	Q3E7Z2	85 aa		0.69	□□□□□ -2.3
PKR1	YMR123W	YOR381W-A	Q3E804	55 aa		0.69	□□□□□ -2.3
PKR1	YMR123W	YLL006W-A	Q3E814	58 aa		0.69	□□□□□ -2.3
PKR1	YMR123W	YGR121W-A	Q3E816	71 aa		0.69	□□□□□ -2.3
PKR1	YMR123W	SRB6	P32570	121 aa		0.68	□□□□□ -2.3
PKR1	YMR123W	YBR027C	P38220	110 aa		0.68	□□□□□ -2.3
PKR1	YMR123W	YHL005C	P38752	130 aa		0.68	□□□□□ -2.3
PKR1	YMR123W	BSC4	P53841	131 aa		0.68	□□□□□ -2.3
PKR1	YMR123W	YNL122C	P53921	115 aa	Predicted RBP	0.68	□□□□□ -2.3
PKR1	YMR123W	AIM11	P87275	137 aa		0.68	□□□□□ -2.3
PKR1	YMR123W	ATP14	Q12349	124 aa		0.68	□□□□□ -2.3
PKR1	YMR123W	YBR230W-A	Q3E762	66 aa		0.68	□□□□□ -2.3
PKR1	YMR123W	YJL127C-B	Q3E828	52 aa		0.68	□□□□□ -2.3
PKR1	YMR123W	RPL29	P05747	59 aa	Predicted RBP	0.67	□□□□□ -2.3
PKR1	YMR123W	GSP1	P32835	219 aa	Known RBP	0.67	□□□□□ -2.3
PKR1	YMR123W	VMA21	P41806	77 aa		0.67	□□□□□ -2.3
PKR1	YMR123W	YNL190W	P53872	204 aa		0.67	□□□□□ -2.3
PKR1	YMR123W	YMR103C	Q04436	120 aa		0.67	□□□□□ -2.3
PKR1	YMR123W	YOR072W	Q08486	104 aa		0.67	□□□□□ -2.3
PKR1	YMR123W	ATP5	P09457	212 aa		0.66	□□□□□ -2.3
PKR1	YMR123W	COX7	P10174	60 aa		0.66	□□□□□ -2.3
PKR1	YMR123W	ATG8	P38182	117 aa	RIP-Chip data	0.66	□□□□□ -2.3	not detected
PKR1	YMR123W	YPL261C	Q08976	102 aa		0.66	□□□□□ -2.3
PKR1	YMR123W	YPR203W	Q08994	102 aa		0.66	□□□□□ -2.3
PKR1	YMR123W	YDL022C-A	P0C5L6	82 aa		0.65	□□□□□ -2.31
PKR1	YMR123W	FYV5	P25585	152 aa		0.65	□□□□□ -2.31
PKR1	YMR123W	MRPS12	P53732	153 aa		0.65	□□□□□ -2.31
PKR1	YMR123W	IRC21	Q04772	201 aa		0.65	□□□□□ -2.31
PKR1	YMR123W	HPA2	Q06592	156 aa		0.65	□□□□□ -2.31
PKR1	YMR123W	PAU17	Q12370	124 aa		0.65	□□□□□ -2.31
PKR1	YMR123W	RPL36B	O14455	100 aa	Known RBP	0.64	□□□□□ -2.31
PKR1	YMR123W	YLR157W-D	P0CE99	70 aa		0.64	□□□□□ -2.31
PKR1	YMR123W	HHO1	P53551	258 aa		0.64	□□□□□ -2.31
PKR1	YMR123W	ICY1	Q04329	127 aa		0.64	□□□□□ -2.31
PKR1	YMR123W	YOR034C-A	Q3E735	80 aa		0.64	□□□□□ -2.31
PKR1	YMR123W	Q0017	Q9ZZX8	53 aa		0.64	□□□□□ -2.31
PKR1	YMR123W	RPS29A	P41057	56 aa	Known RBP	0.63	□□□□□ -2.31
PKR1	YMR123W	YJL009W	P47078	108 aa		0.63	□□□□□ -2.31
PKR1	YMR123W	YDR210W	Q03482	75 aa		0.63	□□□□□ -2.31
PKR1	YMR123W	ZEO1	Q08245	113 aa		0.63	□□□□□ -2.31
PKR1	YMR123W	YDL157C	Q12082	118 aa		0.63	□□□□□ -2.31
PKR1	YMR123W	SCS22	Q6Q595	175 aa		0.63	□□□□□ -2.31
PKR1	YMR123W	FUN14	P18411	198 aa		0.62	□□□□□ -2.31
PKR1	YMR123W	YKL044W	P36092	106 aa		0.62	□□□□□ -2.31
PKR1	YMR123W	RSM18	P40033	138 aa		0.62	□□□□□ -2.31
PKR1	YMR123W	YER187W	P40102	141 aa		0.62	□□□□□ -2.31
PKR1	YMR123W	YJR128W	P47162	119 aa		0.62	□□□□□ -2.31
PKR1	YMR123W	ARL3	Q02804	198 aa		0.62	□□□□□ -2.31
PKR1	YMR123W	PAU23	Q07987	124 aa		0.62	□□□□□ -2.31
PKR1	YMR123W	YLR050C	Q12155	161 aa	Known RBP	0.62	□□□□□ -2.31
PKR1	YMR123W	MRPL44	P19956	98 aa		0.61	□□□□□ -2.31
PKR1	YMR123W	YHR130C	P38834	111 aa		0.61	□□□□□ -2.31
PKR1	YMR123W	RPS29B	P41058	56 aa	Known RBP	0.61	□□□□□ -2.31
PKR1	YMR123W	SFT1	P43682	97 aa		0.61	□□□□□ -2.31
PKR1	YMR123W	YGL230C	P53074	147 aa		0.61	□□□□□ -2.31
PKR1	YMR123W	COF1	Q03048	143 aa	Known RBP	0.61	□□□□□ -2.31
PKR1	YMR123W	FYV7	Q12247	151 aa		0.61	□□□□□ -2.31
PKR1	YMR123W	YOL097W-A	Q3E7Y9	61 aa		0.61	□□□□□ -2.31
PKR1	YMR123W	RAD6	P06104	172 aa		0.6	□□□□□ -2.31
PKR1	YMR123W	MSL1	P40567	111 aa	Predicted RBP	0.6	□□□□□ -2.31
PKR1	YMR123W	GTT1	P40582	234 aa		0.6	□□□□□ -2.31
PKR1	YMR123W	RSM19	P53733	91 aa	Predicted RBP	0.6	□□□□□ -2.31
PKR1	YMR123W	CNL1	Q06333	122 aa		0.6	□□□□□ -2.31
PKR1	YMR123W	YHR073W-A	P0C5N7	58 aa		0.59	□□□□□ -2.31
PKR1	YMR123W	HUR1	P45820	110 aa		0.59	□□□□□ -2.31
PKR1	YMR123W	EDC1	P53080	175 aa	Predicted RBP	0.59	□□□□□ -2.31
PKR1	YMR123W	SEN15	Q04675	128 aa		0.59	□□□□□ -2.31
PKR1	YMR123W	YPR153W	Q06537	140 aa		0.59	□□□□□ -2.31
PKR1	YMR123W	YLR361C-A	Q3E795	98 aa		0.59	□□□□□ -2.31
PKR1	YMR123W	YJL133C-A	Q3E7A3	74 aa		0.59	□□□□□ -2.31
PKR1	YMR123W	COA6	Q3E846	104 aa		0.59	□□□□□ -2.31
PKR1	YMR123W	YHR213W-B	Q8TGK1	99 aa		0.59	□□□□□ -2.31
PKR1	YMR123W	MIC10	Q96VH5	97 aa		0.59	□□□□□ -2.31
PKR1	YMR123W	NHP2	P32495	156 aa	Predicted RBP	0.58	□□□□□ -2.32
PKR1	YMR123W	SSS1	P35179	80 aa		0.58	□□□□□ -2.32
PKR1	YMR123W	ATP18	P81450	59 aa		0.58	□□□□□ -2.32
PKR1	YMR123W	ELC1	Q03071	99 aa		0.58	□□□□□ -2.32
PKR1	YMR123W	YOR316C-A	Q3E806	69 aa		0.58	□□□□□ -2.32
PKR1	YMR123W	YIL134C-A	Q45U18	67 aa		0.58	□□□□□ -2.32
PKR1	YMR123W	YFR009W-A	P0C5M9	85 aa		0.57	□□□□□ -2.32
PKR1	YMR123W	YJR107C-A	P0CT86	78 aa		0.57	□□□□□ -2.32
PKR1	YMR123W	INO4	P13902	151 aa		0.57	□□□□□ -2.32
PKR1	YMR123W	ICS3	P47034	131 aa		0.57	□□□□□ -2.32
PKR1	YMR123W	LIP1	Q03579	150 aa		0.57	□□□□□ -2.32
PKR1	YMR123W	YLR296W	Q05898	108 aa		0.57	□□□□□ -2.32
PKR1	YMR123W	PAI3	P01094	68 aa		0.56	□□□□□ -2.32
PKR1	YMR123W	YBR016W	P38216	128 aa		0.56	□□□□□ -2.32
PKR1	YMR123W	COX23	P38824	151 aa		0.56	□□□□□ -2.32
PKR1	YMR123W	YAR064W	P39563	99 aa		0.56	□□□□□ -2.32
PKR1	YMR123W	TDA2	P40045	126 aa		0.56	□□□□□ -2.32
PKR1	YMR123W	YER181C	P40097	107 aa		0.56	□□□□□ -2.32
PKR1	YMR123W	YGR164W	P53291	111 aa		0.56	□□□□□ -2.32
PKR1	YMR123W	LSM6	Q06406	86 aa	Known RBP	0.56	□□□□□ -2.32
PKR1	YMR123W	RPL36A	P05745	100 aa	Predicted RBP	0.55	□□□□□ -2.32
PKR1	YMR123W	YOL013W-A	P0C272	63 aa	Predicted RBP	0.55	□□□□□ -2.32
PKR1	YMR123W	POP7	P38291	140 aa		0.55	□□□□□ -2.32
PKR1	YMR123W	RPL38	P49167	78 aa	Known RBP	0.55	□□□□□ -2.32
PKR1	YMR123W	NAT5	Q08689	176 aa		0.55	□□□□□ -2.32
PKR1	YMR123W	YML054C-A	Q3E809	52 aa		0.55	□□□□□ -2.32

Retrieved 100 of 5,963 RNA–protein pairs in 23.5 ms