RNA–Protein interactions for RNA: YLR005W

SSL1, Transcript of Subunit of the core form of RNA polymerase transcription factor TFIIH, yeastyeast

Gene SSL1, Length 1,386 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSL1YLR005W SEC11P15367 167 aa2.14□□□□□ -2.07
SSL1YLR005W YAL067W-AQ8TGK6 75 aa2.14□□□□□ -2.07
SSL1YLR005W YLR157W-DP0CE99 70 aa2.13□□□□□ -2.07
SSL1YLR005W OST2P46964 130 aa2.13□□□□□ -2.07
SSL1YLR005W CUE4Q04201 117 aaPredicted RBP2.13□□□□□ -2.07
SSL1YLR005W NHP2P32495 156 aaPredicted RBP2.12□□□□□ -2.07
SSL1YLR005W MSA2P36157 363 aa2.12□□□□□ -2.07
SSL1YLR005W MSL1P40567 111 aaPredicted RBP2.12□□□□□ -2.07
SSL1YLR005W YAR1P46683 200 aa2.12□□□□□ -2.07
SSL1YLR005W YGL230CP53074 147 aa2.12□□□□□ -2.07
SSL1YLR005W TIM11P81449 96 aaPredicted RBP2.12□□□□□ -2.07
SSL1YLR005W YDL157CQ12082 118 aa2.12□□□□□ -2.07
SSL1YLR005W COA6Q3E846 104 aa2.12□□□□□ -2.07
SSL1YLR005W MID2P36027 376 aa2.11□□□□□ -2.07
SSL1YLR005W YOL097W-AQ3E7Y9 61 aa2.11□□□□□ -2.07
SSL1YLR005W CWC27Q02770 301 aa2.1□□□□□ -2.07
SSL1YLR005W FYV7Q12247 151 aa2.1□□□□□ -2.07
SSL1YLR005W Q0017Q9ZZX8 53 aa2.1□□□□□ -2.07
SSL1YLR005W FUN14P18411 198 aa2.1□□□□□ -2.07
SSL1YLR005W SSS1P35179 80 aa2.1□□□□□ -2.07
SSL1YLR005W YIL134C-AQ45U18 67 aa2.1□□□□□ -2.07
SSL1YLR005W TDA8Q6B2U8 126 aa2.1□□□□□ -2.07
SSL1YLR005W MPC3P53311 146 aa2.09□□□□□ -2.08
SSL1YLR005W ECM19Q06011 112 aa2.09□□□□□ -2.08
SSL1YLR005W YOR034C-AQ3E735 80 aa2.09□□□□□ -2.08
SSL1YLR005W RSM18P40033 138 aa2.08□□□□□ -2.08
SSL1YLR005W HUR1P45820 110 aa2.08□□□□□ -2.08
SSL1YLR005W FYV12Q08559 129 aa2.08□□□□□ -2.08
SSL1YLR005W TSC3Q3E790 80 aa2.08□□□□□ -2.08
SSL1YLR005W RSM19P53733 91 aaPredicted RBP2.07□□□□□ -2.08
SSL1YLR005W ELC1Q03071 99 aa2.07□□□□□ -2.08
SSL1YLR005W DSE2P38844 325 aa2.06□□□□□ -2.08
SSL1YLR005W POP7P38291 140 aa2.05□□□□□ -2.08
SSL1YLR005W YER181CP40097 107 aa2.04□□□□□ -2.08
SSL1YLR005W SEN15Q04675 128 aa2.04□□□□□ -2.08
SSL1YLR005W SHH4Q06236 168 aa2.04□□□□□ -2.08
SSL1YLR005W PAI3P01094 68 aa2.02□□□□□ -2.09
SSL1YLR005W COF1Q03048 143 aaKnown RBP2.02□□□□□ -2.09
SSL1YLR005W YLR162WQ06235 118 aa2.02□□□□□ -2.09
SSL1YLR005W LSM6Q06406 86 aaKnown RBP2.02□□□□□ -2.09
SSL1YLR005W NAT5Q08689 176 aa2.02□□□□□ -2.09
SSL1YLR005W YHR213W-BQ8TGK1 99 aa2.02□□□□□ -2.09
SSL1YLR005W YJR107C-AP0CT86 78 aa2.01□□□□□ -2.09
SSL1YLR005W YML108WQ03759 105 aa2.01□□□□□ -2.09
SSL1YLR005W YJL133C-AQ3E7A3 74 aa2.01□□□□□ -2.09
SSL1YLR005W YER187WP40102 141 aa2□□□□□ -2.09
SSL1YLR005W YDR210WQ03482 75 aa2□□□□□ -2.09
SSL1YLR005W YLR363W-AQ3E747 85 aa2□□□□□ -2.09
SSL1YLR005W MIC10Q96VH5 97 aa2□□□□□ -2.09
SSL1YLR005W YHR073W-AP0C5N7 58 aa1.99□□□□□ -2.09
SSL1YLR005W YJR128WP47162 119 aa1.99□□□□□ -2.09
SSL1YLR005W YGL034CP53186 121 aa1.99□□□□□ -2.09
SSL1YLR005W ATP18P81450 59 aa1.99□□□□□ -2.09
SSL1YLR005W YFR009W-AP0C5M9 85 aa1.98□□□□□ -2.09
SSL1YLR005W COX23P38824 151 aa1.98□□□□□ -2.09
SSL1YLR005W YLR296WQ05898 108 aa1.98□□□□□ -2.09
SSL1YLR005W ISD11Q6Q560 94 aa1.98□□□□□ -2.09
SSL1YLR005W ICS3P47034 131 aa1.97□□□□□ -2.09
SSL1YLR005W YJL009WP47078 108 aa1.97□□□□□ -2.09
SSL1YLR005W YGR164WP53291 111 aa1.96□□□□□ -2.1
SSL1YLR005W YBL008W-AQ3E821 79 aa1.96□□□□□ -2.1
SSL1YLR005W YOR304C-AO14468 76 aa1.95□□□□□ -2.1
SSL1YLR005W RPS29AP41057 56 aaKnown RBP1.95□□□□□ -2.1
SSL1YLR005W TDA2P40045 126 aa1.94□□□□□ -2.1
SSL1YLR005W RPS29BP41058 56 aaKnown RBP1.94□□□□□ -2.1
SSL1YLR005W YPR153WQ06537 140 aa1.94□□□□□ -2.1
SSL1YLR005W YDL085C-AQ3E7B7 68 aaKnown RBP1.94□□□□□ -2.1
SSL1YLR005W EDC1P53080 175 aaPredicted RBP1.93□□□□□ -2.1
SSL1YLR005W YKL183C-AQ3E765 70 aa1.93□□□□□ -2.1
SSL1YLR005W YLR361C-AQ3E795 98 aa1.93□□□□□ -2.1
SSL1YLR005W RPL36AP05745 100 aaPredicted RBP1.92□□□□□ -2.1
SSL1YLR005W SAE3P89114 91 aa1.92□□□□□ -2.1
SSL1YLR005W GLC8P41818 229 aa1.91□□□□□ -2.1
SSL1YLR005W YIL102C-AQ2V2P5 75 aa1.91□□□□□ -2.1
SSL1YLR005W YOR316C-AQ3E806 69 aa1.91□□□□□ -2.1
SSL1YLR005W YCR050CP25630 102 aa1.9□□□□□ -2.11
SSL1YLR005W YAR064WP39563 99 aa1.9□□□□□ -2.11
SSL1YLR005W YBR121C-AP0C5L4 52 aa1.89□□□□□ -2.11
SSL1YLR005W YHL042WP38729 150 aa1.89□□□□□ -2.11
SSL1YLR005W LSM8P47093 109 aaKnown RBP1.89□□□□□ -2.11
SSL1YLR005W YOL014WQ08110 124 aa1.89□□□□□ -2.11
SSL1YLR005W YDR381C-AQ3E6R5 114 aa1.89□□□□□ -2.11
SSL1YLR005W RAD6P06104 172 aa1.88□□□□□ -2.11
SSL1YLR005W SKI6P46948 246 aaPredicted RBP1.88□□□□□ -2.11
SSL1YLR005W RPL38P49167 78 aaKnown RBP1.88□□□□□ -2.11
SSL1YLR005W YML054C-AQ3E809 52 aa1.86□□□□□ -2.11
SSL1YLR005W YBR016WP38216 128 aa1.85□□□□□ -2.11
SSL1YLR005W LIP1Q03579 150 aa1.85□□□□□ -2.11
SSL1YLR005W ATP20Q12233 115 aa1.85□□□□□ -2.11
SSL1YLR005W YLR255CO13574 117 aa1.84□□□□□ -2.12
SSL1YLR005W YHR032W-AP0C5N6 59 aa1.84□□□□□ -2.12
SSL1YLR005W YJL144WP47009 104 aa1.84□□□□□ -2.12
SSL1YLR005W PBI2P0CT04 75 aaKnown RBP1.83□□□□□ -2.12
SSL1YLR005W YNL198CP40166 100 aa1.83□□□□□ -2.12
SSL1YLR005W YPR170W-BP0C5R9 85 aa1.81□□□□□ -2.12
SSL1YLR005W YHR125WP38831 101 aa1.81□□□□□ -2.12
SSL1YLR005W COX8P04039 78 aa1.79□□□□□ -2.12
SSL1YLR005W YCR085WP25650 117 aa1.79□□□□□ -2.12
SSL1YLR005W RPA12P32529 125 aaKnown RBP1.79□□□□□ -2.12
SSL1YLR005W YGR039WP53225 103 aa1.76□□□□□ -2.13
Retrieved 100 of 5,963 RNA–protein pairs in 17.5 ms