RNA–Protein interactions for RNA: YDL164C

CDC9, Transcript of DNA ligase found in the nucleus and mitochondria, yeastyeast

Gene CDC9, Length 2,268 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC9YDL164C NCE101Q02820 53 aa2.53□□□□□ -2
CDC9YDL164C YOR192C-CQ3E736 78 aa2.53□□□□□ -2
CDC9YDL164C YPL038W-AQ3E7B4 63 aa2.53□□□□□ -2
CDC9YDL164C SEC16P48415 2195 aaKnown RBP2.53□□□□□ -2
CDC9YDL164C HUA1P40325 198 aa2.52□□□□□ -2.01
CDC9YDL164C TOM7P53507 60 aa2.52□□□□□ -2.01
CDC9YDL164C GIS2P53849 153 aaKnown RBP RIP-Chip data2.52□□□□□ -2.01not detected
CDC9YDL164C YNL146C-AQ3E7Z1 64 aa2.52□□□□□ -2.01
CDC9YDL164C BRR2P32639 2163 aaKnown RBP2.52□□□□□ -2.01
CDC9YDL164C YDL022C-AP0C5L6 82 aa2.51□□□□□ -2.01
CDC9YDL164C POL2P21951 2222 aaKnown RBP2.5□□□□□ -2.01
CDC9YDL164C YLR255CO13574 117 aa2.5□□□□□ -2.01
CDC9YDL164C YHL037CP38733 133 aa2.5□□□□□ -2.01
CDC9YDL164C YHL005CP38752 130 aa2.5□□□□□ -2.01
CDC9YDL164C MGR2Q02889 113 aa2.5□□□□□ -2.01
CDC9YDL164C YDR381C-AQ3E6R5 114 aa2.5□□□□□ -2.01
CDC9YDL164C YGL258W-AQ3E740 77 aa2.5□□□□□ -2.01
CDC9YDL164C YBL071CP38185 102 aa2.49□□□□□ -2.01
CDC9YDL164C LCL2Q08045 131 aa2.49□□□□□ -2.01
CDC9YDL164C FPR2P32472 135 aa2.49□□□□□ -2.01
CDC9YDL164C PFY1P07274 126 aa2.48□□□□□ -2.01
CDC9YDL164C YMR141CP40211 102 aa2.47□□□□□ -2.01
CDC9YDL164C TOS6P48560 102 aa2.47□□□□□ -2.01
CDC9YDL164C YSY6P38374 65 aa2.46□□□□□ -2.02
CDC9YDL164C AIM19P40502 157 aa2.46□□□□□ -2.02
CDC9YDL164C YDR210WQ03482 75 aa2.46□□□□□ -2.02
CDC9YDL164C SPI1P40092 148 aa2.45□□□□□ -2.02
CDC9YDL164C SNA2P56508 79 aa2.44□□□□□ -2.02
CDC9YDL164C RPS27AP35997 82 aaKnown RBP2.43□□□□□ -2.02
CDC9YDL164C RPS27BP38711 82 aa2.43□□□□□ -2.02
CDC9YDL164C MPC2P38857 129 aa2.43□□□□□ -2.02
CDC9YDL164C YDR246W-AQ3E763 66 aa2.43□□□□□ -2.02
CDC9YDL164C YLR342W-AQ3E810 57 aa2.43□□□□□ -2.02
CDC9YDL164C SEN1Q00416 2231 aaKnown RBP2.43□□□□□ -2.02
CDC9YDL164C CCW14O13547 238 aa2.42□□□□□ -2.02
CDC9YDL164C YHR212W-AP0CX91 67 aa2.42□□□□□ -2.02
CDC9YDL164C YNL190WP53872 204 aa2.42□□□□□ -2.02
CDC9YDL164C IRC21Q04772 201 aa2.42□□□□□ -2.02
CDC9YDL164C YOR008C-AQ3E7B9 74 aa2.41□□□□□ -2.02
CDC9YDL164C LCL1Q02786 101 aa2.4□□□□□ -2.02
CDC9YDL164C URA2P07259 2214 aaKnown RBP2.4□□□□□ -2.03
CDC9YDL164C YHR214C-DP0CX93 97 aa2.4□□□□□ -2.03
CDC9YDL164C YIL156W-BQ2V2P4 73 aa2.4□□□□□ -2.03
CDC9YDL164C MRX7P53869 86 aa2.39□□□□□ -2.03
CDC9YDL164C YDR524C-BQ3E6R4 66 aa2.39□□□□□ -2.03
CDC9YDL164C ERI1P62651 68 aaKnown RBP2.39□□□□□ -2.03
CDC9YDL164C SHU1P38751 150 aa2.38□□□□□ -2.03
CDC9YDL164C YCL048W-AQ2V2Q2 79 aa2.38□□□□□ -2.03
CDC9YDL164C YGR240C-AQ3E786 66 aa2.38□□□□□ -2.03
CDC9YDL164C YGL041C-BQ3E750 60 aa2.38□□□□□ -2.03
CDC9YDL164C YAL065CO13511 128 aa2.37□□□□□ -2.03
CDC9YDL164C YDR010CQ12426 110 aa2.37□□□□□ -2.03
CDC9YDL164C TOM1Q03280 3268 aa2.36□□□□□ -2.03
CDC9YDL164C EDC1P53080 175 aaPredicted RBP2.36□□□□□ -2.03
CDC9YDL164C YOR314WQ12506 109 aa2.35□□□□□ -2.03
CDC9YDL164C YGR121W-AQ3E816 71 aa2.35□□□□□ -2.03
CDC9YDL164C YER188C-AP0C0V2 99 aa2.35□□□□□ -2.03
CDC9YDL164C YOL013W-AP0C272 63 aaPredicted RBP2.35□□□□□ -2.03
CDC9YDL164C YJR107C-AP0CT86 78 aa2.35□□□□□ -2.03
CDC9YDL164C YIL086CP40503 102 aa2.35□□□□□ -2.03
CDC9YDL164C YOR034C-AQ3E735 80 aa2.35□□□□□ -2.03
CDC9YDL164C YDR182W-AQ3E796 67 aa2.34□□□□□ -2.04
CDC9YDL164C YIL046W-AQ3E7Z4 54 aa2.34□□□□□ -2.04
CDC9YDL164C NOP10Q6Q547 58 aaPredicted RBP2.34□□□□□ -2.04
CDC9YDL164C RPS11AP0CX47 156 aaKnown RBP2.33□□□□□ -2.04
CDC9YDL164C RPS11BP0CX48 156 aaKnown RBP2.33□□□□□ -2.04
CDC9YDL164C YOL166W-AQ8TGJ1 51 aa2.33□□□□□ -2.04
CDC9YDL164C YNL122CP53921 115 aaPredicted RBP2.32□□□□□ -2.04
CDC9YDL164C YKL065W-AQ2V2P2 73 aa2.32□□□□□ -2.04
CDC9YDL164C YBR200W-AQ3E755 54 aa2.32□□□□□ -2.04
CDC9YDL164C YGR035W-AQ45U48 73 aa2.32□□□□□ -2.04
CDC9YDL164C YMR105W-AQ8TGS8 64 aa2.32□□□□□ -2.04
CDC9YDL164C ATP18P81450 59 aa2.31□□□□□ -2.04
CDC9YDL164C BSC4P53841 131 aa2.31□□□□□ -2.04
CDC9YDL164C YGR025WP53216 100 aa2.3□□□□□ -2.04
CDC9YDL164C SIP18P50263 79 aa2.3□□□□□ -2.04
CDC9YDL164C IRA2P19158 3079 aa2.3□□□□□ -2.04
CDC9YDL164C YFR009W-AP0C5M9 85 aa2.29□□□□□ -2.04
CDC9YDL164C RPL38P49167 78 aaKnown RBP2.29□□□□□ -2.04
CDC9YDL164C YOR032W-AQ8TGS1 66 aa2.29□□□□□ -2.04
CDC9YDL164C RPS30AP0CX33 63 aaKnown RBP2.29□□□□□ -2.04
CDC9YDL164C RPS30BP0CX34 63 aaKnown RBP2.29□□□□□ -2.04
CDC9YDL164C RPL39P04650 51 aa2.28□□□□□ -2.04
CDC9YDL164C VPS13Q07878 3144 aa2.28□□□□□ -2.04
CDC9YDL164C YCR001WP25347 104 aa2.28□□□□□ -2.05
CDC9YDL164C YLL006W-AQ3E814 58 aa2.27□□□□□ -2.05
CDC9YDL164C MVB12P42939 101 aa2.26□□□□□ -2.05
CDC9YDL164C YMR122W-AQ3E842 84 aa2.24□□□□□ -2.05
CDC9YDL164C YPR010C-AA5Z2X5 72 aa2.22□□□□□ -2.05
CDC9YDL164C RPL29P05747 59 aaPredicted RBP2.22□□□□□ -2.05
CDC9YDL164C YJL009WP47078 108 aa2.22□□□□□ -2.05
CDC9YDL164C PMP3P87284 55 aa2.22□□□□□ -2.05
CDC9YDL164C YOR011W-AQ3E807 68 aa2.22□□□□□ -2.05
CDC9YDL164C YIL102CP40488 101 aa2.21□□□□□ -2.06
CDC9YDL164C YBR201C-AQ2V2Q3 67 aa2.21□□□□□ -2.06
CDC9YDL164C HUB1Q6Q546 73 aa2.21□□□□□ -2.06
CDC9YDL164C YAR064WP39563 99 aa2.2□□□□□ -2.06
CDC9YDL164C HHY1P39982 102 aa2.2□□□□□ -2.06
CDC9YDL164C YHR213W-BQ8TGK1 99 aa2.2□□□□□ -2.06
CDC9YDL164C YNL042W-BQ3E7Z2 85 aa2.19□□□□□ -2.06
Retrieved 100 of 5,963 RNA–protein pairs in 18 ms