RNA–Protein interactions for RNA: YHR088W

RPF1, Transcript of Protein involved in assembly and export of the large ribosomal subunit, yeastyeast

Gene RPF1, Length 888 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPF1YHR088W TY1B-ML2Q03434 1755 aaKnown RBP-1.01□□□□□ -2.57
RPF1YHR088W TY1B-ER1Q03612 1755 aa-1.01□□□□□ -2.57
RPF1YHR088W TY1B-DR1Q03855 1755 aa-1.01□□□□□ -2.57
RPF1YHR088W TY1B-MR2Q04670 1755 aaKnown RBP-1.01□□□□□ -2.57
RPF1YHR088W TY1B-ML1Q04711 1755 aaKnown RBP-1.01□□□□□ -2.57
RPF1YHR088W TY1B-GR1Q12141 1755 aa-1.01□□□□□ -2.57
RPF1YHR088W TY1B-GR2Q12269 1755 aa-1.01□□□□□ -2.57
RPF1YHR088W TY1B-OLQ12273 1755 aa-1.01□□□□□ -2.57
RPF1YHR088W TY1B-PLQ12414 1755 aaKnown RBP-1.01□□□□□ -2.57
RPF1YHR088W TY1B-ORQ92393 1755 aa-1.01□□□□□ -2.57
RPF1YHR088W TY1B-DR3Q99231 1755 aa-1.01□□□□□ -2.57
RPF1YHR088W PAU1P0CE88 120 aa-1.02□□□□□ -2.57
RPF1YHR088W PAU14P0CE89 120 aa-1.02□□□□□ -2.57
RPF1YHR088W PAU8P0CE92 120 aa-1.02□□□□□ -2.57
RPF1YHR088W PAU11P0CE93 120 aa-1.02□□□□□ -2.57
RPF1YHR088W UBC4P15731 148 aa-1.02□□□□□ -2.57
RPF1YHR088W MEC1P38111 2368 aa-1.02□□□□□ -2.57
RPF1YHR088W PAU13P38725 120 aa-1.02□□□□□ -2.57
RPF1YHR088W PAU10Q03050 120 aa-1.02□□□□□ -2.57
RPF1YHR088W PAU9Q3E770 120 aa-1.02□□□□□ -2.57
RPF1YHR088W UBC5P15732 148 aa-1.03□□□□□ -2.57
RPF1YHR088W TY3B-IQ7LHG5 1498 aaKnown RBP-1.05□□□□□ -2.58
RPF1YHR088W RPO21P04050 1733 aaKnown RBP-1.05□□□□□ -2.58
RPF1YHR088W YBR090CP38253 122 aa-1.05□□□□□ -2.58
RPF1YHR088W YMR103CQ04436 120 aa-1.05□□□□□ -2.58
RPF1YHR088W YBR201C-AQ2V2Q3 67 aa-1.05□□□□□ -2.58
RPF1YHR088W YMR001C-AQ8TGS9 76 aa-1.05□□□□□ -2.58
RPF1YHR088W SPP41P38904 1435 aa-1.06□□□□□ -2.58
RPF1YHR088W YBL044WP38194 122 aa-1.06□□□□□ -2.58
RPF1YHR088W SPC1P46965 94 aa-1.06□□□□□ -2.58
RPF1YHR088W PAU4P53427 120 aa-1.06□□□□□ -2.58
RPF1YHR088W NHP10Q03435 203 aa-1.06□□□□□ -2.58
RPF1YHR088W ECM12O13529 151 aa-1.07□□□□□ -2.58
RPF1YHR088W YHL005CP38752 130 aa-1.07□□□□□ -2.58
RPF1YHR088W GNA1P43577 159 aaPredicted RBP-1.07□□□□□ -2.58
RPF1YHR088W RSM19P53733 91 aaPredicted RBP-1.07□□□□□ -2.58
RPF1YHR088W WIP1Q2V2P8 89 aa-1.07□□□□□ -2.58
RPF1YHR088W TY1B-MR1Q04214 1755 aa-1.08□□□□□ -2.58
RPF1YHR088W TY1B-NL1Q12112 1755 aa-1.08□□□□□ -2.58
RPF1YHR088W TY1B-GR3Q12316 1755 aa-1.08□□□□□ -2.58
RPF1YHR088W RGI1P40043 161 aaPredicted RBP-1.09□□□□□ -2.58
RPF1YHR088W IRA2P19158 3079 aa-1.09□□□□□ -2.58
RPF1YHR088W STT4P37297 1900 aa-1.09□□□□□ -2.58
RPF1YHR088W TOM6P33448 61 aa-1.1□□□□□ -2.59
RPF1YHR088W YMR090WQ04304 227 aaKnown RBP-1.1□□□□□ -2.59
RPF1YHR088W YOR289WQ12012 251 aaPredicted RBP-1.1□□□□□ -2.59
RPF1YHR088W YMR122W-AQ3E842 84 aa-1.1□□□□□ -2.59
RPF1YHR088W MMS1Q06211 1407 aa-1.11□□□□□ -2.59
RPF1YHR088W TRA1P38811 3744 aa-1.12□□□□□ -2.59
RPF1YHR088W SPO14P36126 1683 aa-1.12□□□□□ -2.59
RPF1YHR088W KSH1Q8TGJ3 72 aa-1.12□□□□□ -2.59
RPF1YHR088W TY2B-LR1P0C2J3 1770 aa-1.12□□□□□ -2.59
RPF1YHR088W TY2B-FP0CX63 1770 aa-1.12□□□□□ -2.59
RPF1YHR088W TY2B-GR2P0CX64 1770 aa-1.12□□□□□ -2.59
RPF1YHR088W TY2B-CP25384 1770 aa-1.12□□□□□ -2.59
RPF1YHR088W TY2B-DR2Q03494 1770 aa-1.12□□□□□ -2.59
RPF1YHR088W TY2B-DR3Q07791 1770 aaKnown RBP-1.12□□□□□ -2.59
RPF1YHR088W TY2B-OR1Q12113 1770 aa-1.12□□□□□ -2.59
RPF1YHR088W TY2B-DR1Q12472 1770 aa-1.12□□□□□ -2.59
RPF1YHR088W TY2B-BQ12491 1770 aa-1.12□□□□□ -2.59
RPF1YHR088W TY2B-OR2Q12501 1770 aa-1.12□□□□□ -2.59
RPF1YHR088W EDC1P53080 175 aaPredicted RBP-1.13□□□□□ -2.59
RPF1YHR088W SDH6Q3E785 79 aa-1.13□□□□□ -2.59
RPF1YHR088W TY1B-ER2Q03619 1755 aa-1.13□□□□□ -2.59
RPF1YHR088W TY1B-LR1Q12088 1755 aaKnown RBP-1.13□□□□□ -2.59
RPF1YHR088W HMRA1P0CY11 126 aa-1.14□□□□□ -2.59
RPF1YHR088W RRT15Q3E811 62 aa-1.14□□□□□ -2.59
RPF1YHR088W GEA1P47102 1408 aaPredicted RBP-1.15□□□□□ -2.59
RPF1YHR088W YOR304C-AO14468 76 aa-1.15□□□□□ -2.59
RPF1YHR088W CUP1-1P0CX80 61 aa-1.15□□□□□ -2.59
RPF1YHR088W CUP1-2P0CX81 61 aa-1.15□□□□□ -2.59
RPF1YHR088W EMC5P40540 141 aa-1.15□□□□□ -2.59
RPF1YHR088W TY1B-NL2Q99337 1749 aaKnown RBP-1.15□□□□□ -2.59
RPF1YHR088W YAL065CO13511 128 aa-1.16□□□□□ -2.6
RPF1YHR088W BSC4P53841 131 aa-1.16□□□□□ -2.6
RPF1YHR088W ATP18P81450 59 aa-1.16□□□□□ -2.6
RPF1YHR088W TSC11P40061 1430 aa-1.16□□□□□ -2.6
RPF1YHR088W ECM29P38737 1868 aa-1.17□□□□□ -2.6
RPF1YHR088W LHP1P33399 275 aaKnown RBP-1.17□□□□□ -2.6
RPF1YHR088W YDR182W-AQ3E796 67 aa-1.19□□□□□ -2.6
RPF1YHR088W VTH1P40438 1549 aa-1.2□□□□□ -2.6
RPF1YHR088W VTH2P40890 1549 aa-1.2□□□□□ -2.6
RPF1YHR088W YHR214C-DP0CX93 97 aa-1.2□□□□□ -2.6
RPF1YHR088W PDR11P40550 1411 aa-1.21□□□□□ -2.6
RPF1YHR088W YBR032WP38223 100 aa-1.21□□□□□ -2.6
RPF1YHR088W YPR108W-AQ3E7B3 70 aa-1.21□□□□□ -2.6
RPF1YHR088W POL1P13382 1468 aa-1.21□□□□□ -2.6
RPF1YHR088W MOT1P32333 1867 aa-1.21□□□□□ -2.6
RPF1YHR088W YCR085WP25650 117 aa-1.22□□□□□ -2.6
RPF1YHR088W SNU13P39990 126 aaKnown RBP-1.22□□□□□ -2.6
RPF1YHR088W RPS12P48589 143 aaKnown RBP-1.22□□□□□ -2.6
RPF1YHR088W YOR008C-AQ3E7B9 74 aa-1.22□□□□□ -2.6
RPF1YHR088W YKL018C-AQ3E7A7 99 aa-1.23□□□□□ -2.61
RPF1YHR088W YDR029WQ12111 104 aa-1.24□□□□□ -2.61
RPF1YHR088W REV3P14284 1504 aa-1.25□□□□□ -2.61
RPF1YHR088W GEA2P39993 1459 aaKnown RBP-1.26□□□□□ -2.61
RPF1YHR088W FPR2P32472 135 aa-1.27□□□□□ -2.61
RPF1YHR088W NHP2P32495 156 aaPredicted RBP-1.27□□□□□ -2.61
RPF1YHR088W YDR042CQ03205 200 aa-1.27□□□□□ -2.61
RPF1YHR088W UTP10P42945 1769 aaKnown RBP-1.27□□□□□ -2.61
Retrieved 100 of 5,963 RNA–protein pairs in 51.7 ms