RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 FBXO40Q9UH90 709 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 ZFP69BQ9UJL9 534 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 DCTN4Q9UJW0 460 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 A0A1W2PRQ8 180 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 SPDYE5A6NIY4 337 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 TTC34A8MYJ7 566 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 ANKRD63C9JTQ0 380 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 ESRRAP11474 423 aaPredicted RBP10.85□□□□□ -0.67
LIG1-220ENST00000601091 HNF1BP35680 557 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 SOX11P35716 441 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 COPS2P61201 443 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 ZNF568Q3ZCX4 644 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 TMEM214Q6NUQ4 689 aaKnown RBP10.85□□□□□ -0.67
LIG1-220ENST00000601091 FAM83AQ86UY5 434 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 RHPN2Q8IUC4 686 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 MAP4K3Q8IVH8 894 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 FAF2Q96CS3 445 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 SNX27Q96L92 541 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 DDX23Q9BUQ8 820 aaKnown RBP10.85□□□□□ -0.67
LIG1-220ENST00000601091 ASNSD1Q9NWL6 643 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 PCDHGA3Q9Y5H0 932 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 MAP3K7O43318 606 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 VASPP50552 380 aaPredicted RBP10.85□□□□□ -0.67
LIG1-220ENST00000601091 STAT5BP51692 787 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 GEMIN4P57678 1058 aaKnown RBP10.85□□□□□ -0.67
LIG1-220ENST00000601091 ACTR2P61160 394 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 PDE1CQ14123 709 aaPredicted RBP10.85□□□□□ -0.67
LIG1-220ENST00000601091 PGM5Q15124 567 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 SGSM1Q2NKQ1 1148 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 Q3C1V9 767 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 CCDC153Q494R4 210 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 ZNF772Q68DY9 489 aaPredicted RBP10.85□□□□□ -0.67
LIG1-220ENST00000601091 NLRP9Q7RTR0 991 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 EXD1Q8NHP7 514 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 SLC22A8Q8TCC7 542 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 TTC1Q99614 292 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 AVENQ9NQS1 362 aaPredicted RBP10.85□□□□□ -0.67
LIG1-220ENST00000601091 FAF1Q9UNN5 650 aaPredicted RBP10.85□□□□□ -0.67
LIG1-220ENST00000601091 NR2E1Q9Y466 385 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 ATP8B3O60423 1300 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 ATXN2Q99700 1313 aaKnown RBP10.85□□□□□ -0.67
LIG1-220ENST00000601091 C19orf81C9J6K1 198 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 TMEM127O75204 238 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 ZBED1O96006 694 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 RPL17P18621 184 aaKnown RBP10.85□□□□□ -0.67
LIG1-220ENST00000601091 FMO1Q01740 532 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 C12orf56Q8IXR9 622 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 ACAP3Q96P50 834 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 PRPF18Q99633 342 aaKnown RBP10.85□□□□□ -0.67
LIG1-220ENST00000601091 DCLK3Q9C098 648 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 BCAS3Q9H6U6 928 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 NGRNQ9NPE2 291 aaKnown RBP10.85□□□□□ -0.67
LIG1-220ENST00000601091 PXMP2Q9NR77 195 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 PIM2Q9P1W9 311 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 AJAP1Q9UKB5 411 aaPredicted RBP10.85□□□□□ -0.67
LIG1-220ENST00000601091 CHD4Q14839 1912 aa10.85□□□□□ -0.67
LIG1-220ENST00000601091 IGF2BP3O00425 579 aaKnown RBP eCLIP10.84□□□□□ -0.67
LIG1-220ENST00000601091 SMNDC1O75940 238 aaKnown RBP eCLIP10.84□□□□□ -0.671e-10■■■□□ 18.1
LIG1-220ENST00000601091 DRD4P21917 467 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 SOX10P56693 466 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 AUHQ13825 339 aaKnown RBP10.84□□□□□ -0.67
LIG1-220ENST00000601091 SIM2Q14190 667 aaPredicted RBP10.84□□□□□ -0.67
LIG1-220ENST00000601091 CDO1Q16878 200 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 ZC3H3Q8IXZ2 948 aaKnown RBP10.84□□□□□ -0.67
LIG1-220ENST00000601091 CFAP61Q8NHU2 1237 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 PPP4R1Q8TF05 950 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 CDKL2Q92772 493 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 ELMO3Q96BJ8 720 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 C2orf40Q9H1Z8 148 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 LRRC19Q9H756 370 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 CHST7Q9NS84 486 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 PSMC3IPQ9P2W1 217 aaPredicted RBP10.84□□□□□ -0.67
LIG1-220ENST00000601091 PHF24Q9UPV7 400 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 NAALADL1Q9UQQ1 740 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 STXBP5LQ9Y2K9 1186 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 A0A1W2PQ67 120 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 COPEO14579 308 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 UBOX5O94941 541 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 ADRB2P07550 413 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 DNAJC3Q13217 504 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 SPDYE2Q495Y8 402 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 TWF2Q6IBS0 349 aaKnown RBP10.84□□□□□ -0.67
LIG1-220ENST00000601091 RNF149Q8NC42 400 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 C8orf4Q9NR00 106 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 COG5Q9UP83 839 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 UBR2Q8IWV8 1755 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 MYO5AQ9Y4I1 1855 aaKnown RBP10.84□□□□□ -0.67
LIG1-220ENST00000601091 GYG2O15488 501 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 ZNF254O75437 659 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 PDHA1P08559 390 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 HOXD13P35453 343 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 ETFBP38117 255 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 BPIFB3P59826 476 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 DALRD3Q5D0E6 543 aaKnown RBP10.84□□□□□ -0.67
LIG1-220ENST00000601091 ABRAQ8N0Z2 381 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 ART4Q93070 314 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 CFAP36Q96G28 342 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 MAGEB18Q96M61 343 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 CYTH2Q99418 400 aa10.84□□□□□ -0.67
LIG1-220ENST00000601091 COQ7Q99807 217 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms