RNA–Protein interactions for RNA: YDL077C

VAM6, Transcript of Subunit of the HOPS endocytic tethering complex, yeast

Gene VAM6, Length 3,150 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VAM6	YDL077C	PPT2	Q12036	173 aa		0.86	□□□□□ -2.27
VAM6	YDL077C	USV1	Q12132	391 aa		0.86	□□□□□ -2.27
VAM6	YDL077C	RPS21B	Q3E754	87 aa	Known RBP	0.86	□□□□□ -2.27
VAM6	YDL077C	RPL36B	O14455	100 aa	Known RBP	0.86	□□□□□ -2.27
VAM6	YDL077C	HHF1	P02309	103 aa	Known RBP	0.86	□□□□□ -2.27
VAM6	YDL077C	RPL36A	P05745	100 aa	Predicted RBP	0.86	□□□□□ -2.27
VAM6	YDL077C	YDL022C-A	P0C5L6	82 aa		0.86	□□□□□ -2.27
VAM6	YDL077C	RPL23A	P0CX41	137 aa	Known RBP	0.86	□□□□□ -2.27
VAM6	YDL077C	RPL23B	P0CX42	137 aa	Known RBP	0.86	□□□□□ -2.27
VAM6	YDL077C	SPS100	P13130	326 aa		0.86	□□□□□ -2.27
VAM6	YDL077C	RPL30	P14120	105 aa	Known RBP	0.86	□□□□□ -2.27
VAM6	YDL077C	RPL16A	P26784	199 aa	Known RBP	0.86	□□□□□ -2.27
VAM6	YDL077C	MIG3	P39943	394 aa		0.86	□□□□□ -2.27
VAM6	YDL077C	RSM18	P40033	138 aa		0.86	□□□□□ -2.27
VAM6	YDL077C	YER187W	P40102	141 aa		0.86	□□□□□ -2.27
VAM6	YDL077C	URM1	P40554	99 aa	Predicted RBP	0.86	□□□□□ -2.27
VAM6	YDL077C	TOS8	P53147	276 aa		0.86	□□□□□ -2.27
VAM6	YDL077C	YIL014C-A	Q02598	104 aa		0.86	□□□□□ -2.27
VAM6	YDL077C	YLR194C	Q05777	254 aa		0.86	□□□□□ -2.27
VAM6	YDL077C	YLR162W	Q06235	118 aa		0.86	□□□□□ -2.27
VAM6	YDL077C	MIM1	Q08176	113 aa		0.86	□□□□□ -2.27
VAM6	YDL077C	FIT2	Q08906	153 aa		0.86	□□□□□ -2.27
VAM6	YDL077C	COX17	Q12287	69 aa		0.86	□□□□□ -2.27
VAM6	YDL077C	CRC1	Q12289	327 aa		0.86	□□□□□ -2.27
VAM6	YDL077C	SPO24	Q3E752	67 aa		0.86	□□□□□ -2.27
VAM6	YDL077C	RPL42A	P0CX27	106 aa	Known RBP	0.86	□□□□□ -2.27
VAM6	YDL077C	RPL42B	P0CX28	106 aa	Known RBP	0.86	□□□□□ -2.27
VAM6	YDL077C	YHR214C-D	P0CX93	97 aa		0.86	□□□□□ -2.27
VAM6	YDL077C	HMRA2	P0CY13	119 aa		0.86	□□□□□ -2.27
VAM6	YDL077C	HOT13	P36078	116 aa		0.86	□□□□□ -2.27
VAM6	YDL077C	YBR209W	P38311	105 aa		0.86	□□□□□ -2.27
VAM6	YDL077C	MBB1	P39534	108 aa		0.86	□□□□□ -2.27
VAM6	YDL077C	YIL029C	P40538	142 aa		0.86	□□□□□ -2.27
VAM6	YDL077C	PIR5	P46999	287 aa		0.86	□□□□□ -2.27
VAM6	YDL077C	KNH1	P50112	268 aa		0.86	□□□□□ -2.27
VAM6	YDL077C	YNR077C	P53758	84 aa		0.86	□□□□□ -2.27
VAM6	YDL077C	NCE101	Q02820	53 aa		0.86	□□□□□ -2.27
VAM6	YDL077C	PBP4	Q07362	185 aa	Known RBP	0.86	□□□□□ -2.27
VAM6	YDL077C	DAD1	Q12248	94 aa		0.86	□□□□□ -2.27
VAM6	YDL077C	PIS1	P06197	220 aa	Known RBP	0.85	□□□□□ -2.27
VAM6	YDL077C	RPS14A	P06367	137 aa	Known RBP	0.85	□□□□□ -2.27
VAM6	YDL077C	AGA1	P32323	725 aa		0.85	□□□□□ -2.27
VAM6	YDL077C	CSE2	P33308	149 aa		0.85	□□□□□ -2.27
VAM6	YDL077C	YKR045C	P36138	183 aa		0.85	□□□□□ -2.27
VAM6	YDL077C	RPS14B	P39516	138 aa	Known RBP	0.85	□□□□□ -2.27
VAM6	YDL077C	LST8	P41318	303 aa		0.85	□□□□□ -2.27
VAM6	YDL077C	YFL051C	P43552	160 aa		0.85	□□□□□ -2.27
VAM6	YDL077C	YNL234W	P53857	426 aa		0.85	□□□□□ -2.27
VAM6	YDL077C	SMD1	Q02260	146 aa	Predicted RBP	0.85	□□□□□ -2.27
VAM6	YDL077C	YMR007W	Q03675	126 aa		0.85	□□□□□ -2.27
VAM6	YDL077C	SPG4	Q04438	115 aa		0.85	□□□□□ -2.27
VAM6	YDL077C	YLR281C	Q05863	155 aa		0.85	□□□□□ -2.27
VAM6	YDL077C	YLR042C	Q07990	161 aa		0.85	□□□□□ -2.27
VAM6	YDL077C	VPS68	Q12016	184 aa		0.85	□□□□□ -2.27
VAM6	YDL077C	TIM22	Q12328	207 aa		0.85	□□□□□ -2.27
VAM6	YDL077C	YDR246W-A	Q3E763	66 aa		0.85	□□□□□ -2.27
VAM6	YDL077C	TSC3	Q3E790	80 aa		0.85	□□□□□ -2.27
VAM6	YDL077C	YLR307C-A	Q3E825	87 aa		0.85	□□□□□ -2.27
VAM6	YDL077C	HUG1	Q6Q5K6	68 aa		0.85	□□□□□ -2.27
VAM6	YDL077C	YHR214C-E	Q8TGK0	99 aa		0.85	□□□□□ -2.27
VAM6	YDL077C	YLR236C	A0A023PZG4	107 aa		0.85	□□□□□ -2.27
VAM6	YDL077C	RPB9	P27999	122 aa		0.85	□□□□□ -2.27
VAM6	YDL077C	YPS5	P53057	165 aa		0.85	□□□□□ -2.27
VAM6	YDL077C	MPC3	P53311	146 aa		0.85	□□□□□ -2.27
VAM6	YDL077C	YMR181C	Q03231	154 aa		0.85	□□□□□ -2.27
VAM6	YDL077C	AIM4	P38305	123 aa	Predicted RBP	0.84	□□□□□ -2.27
VAM6	YDL077C	PCL5	P38794	229 aa		0.84	□□□□□ -2.27
VAM6	YDL077C	YMR141C	P40211	102 aa		0.84	□□□□□ -2.27
VAM6	YDL077C	YFL015C	P43578	164 aa		0.84	□□□□□ -2.27
VAM6	YDL077C	VPS55	P47111	140 aa		0.84	□□□□□ -2.27
VAM6	YDL077C	ICY1	Q04329	127 aa		0.84	□□□□□ -2.27
VAM6	YDL077C	SRL1	Q08673	210 aa		0.84	□□□□□ -2.27
VAM6	YDL077C	YPL261C	Q08976	102 aa		0.84	□□□□□ -2.27
VAM6	YDL077C	YOR008C-A	Q3E7B9	74 aa		0.84	□□□□□ -2.27
VAM6	YDL077C	HUB1	Q6Q546	73 aa		0.84	□□□□□ -2.27
VAM6	YDL077C	YML100W-A	Q8TGT0	57 aa		0.84	□□□□□ -2.27
VAM6	YDL077C	YBL071C	P38185	102 aa		0.84	□□□□□ -2.28
VAM6	YDL077C	YER135C	P40082	130 aa		0.84	□□□□□ -2.28
VAM6	YDL077C	YFR035C	P43608	114 aa		0.84	□□□□□ -2.28
VAM6	YDL077C	ATP23	P53722	227 aa		0.84	□□□□□ -2.28
VAM6	YDL077C	MRPS12	P53732	153 aa		0.84	□□□□□ -2.28
VAM6	YDL077C	RGM1	Q00453	211 aa		0.84	□□□□□ -2.28
VAM6	YDL077C	YMR321C	Q04898	105 aa		0.84	□□□□□ -2.28
VAM6	YDL077C	GAT3	Q07928	141 aa		0.84	□□□□□ -2.28
VAM6	YDL077C	TDA8	Q6B2U8	126 aa		0.84	□□□□□ -2.28
VAM6	YDL077C	YOR032W-A	Q8TGS1	66 aa		0.84	□□□□□ -2.28
VAM6	YDL077C	CYR1	P08678	2026 aa	Known RBP	0.84	□□□□□ -2.28
VAM6	YDL077C	FPR1	P20081	114 aa	Known RBP	0.84	□□□□□ -2.28
VAM6	YDL077C	HSP150	P32478	413 aa		0.84	□□□□□ -2.28
VAM6	YDL077C	YKL097C	P34245	136 aa		0.84	□□□□□ -2.28
VAM6	YDL077C	UTH1	P36135	365 aa		0.84	□□□□□ -2.28
VAM6	YDL077C	TIM17	P39515	158 aa		0.84	□□□□□ -2.28
VAM6	YDL077C	YGR018C	P53211	109 aa		0.84	□□□□□ -2.28
VAM6	YDL077C	TDA7	P53882	636 aa	Predicted RBP	0.84	□□□□□ -2.28
VAM6	YDL077C	IRC21	Q04772	201 aa		0.84	□□□□□ -2.28
VAM6	YDL077C	PBA1	Q05778	276 aa		0.84	□□□□□ -2.28
VAM6	YDL077C	YDL241W	Q07738	123 aa		0.84	□□□□□ -2.28
VAM6	YDL077C	YPR064W	Q12492	139 aa		0.84	□□□□□ -2.28
VAM6	YDL077C	RPL29	P05747	59 aa	Predicted RBP	0.83	□□□□□ -2.28
VAM6	YDL077C	YCR022C	P25620	114 aa		0.83	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 404 ms