RNA–Protein interactions for RNA: YNL293W

MSB3, Transcript of Rab GTPase-activating protein, yeast

Gene MSB3, Length 1,902 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MSB3	YNL293W	GAT4	P40569	121 aa		5.82	□□□□□ -1.48
MSB3	YNL293W	UBC9	P50623	157 aa	Predicted RBP	5.82	□□□□□ -1.48
MSB3	YNL293W	YDR102C	Q03864	110 aa		5.82	□□□□□ -1.48
MSB3	YNL293W	YBL081W	P38180	368 aa	Known RBP	5.82	□□□□□ -1.48
MSB3	YNL293W	SGN1	P40561	250 aa	Known RBP RIP-Chip data	5.82	□□□□□ -1.48	not detected
MSB3	YNL293W	RSM19	P53733	91 aa	Predicted RBP	5.82	□□□□□ -1.48
MSB3	YNL293W	RRS1	Q08746	203 aa	Known RBP	5.82	□□□□□ -1.48
MSB3	YNL293W	NIP7	Q08962	181 aa	Known RBP	5.82	□□□□□ -1.48
MSB3	YNL293W	YPR064W	Q12492	139 aa		5.82	□□□□□ -1.48
MSB3	YNL293W	RPL42A	P0CX27	106 aa	Known RBP	5.81	□□□□□ -1.48
MSB3	YNL293W	RPL42B	P0CX28	106 aa	Known RBP	5.81	□□□□□ -1.48
MSB3	YNL293W	YNL046W	P53956	172 aa		5.81	□□□□□ -1.48
MSB3	YNL293W	YPL261C	Q08976	102 aa		5.81	□□□□□ -1.48
MSB3	YNL293W	RPS21A	P0C0V8	87 aa	Known RBP	5.8	□□□□□ -1.48
MSB3	YNL293W	YER187W	P40102	141 aa		5.8	□□□□□ -1.48
MSB3	YNL293W	CDC1	P40986	491 aa		5.8	□□□□□ -1.48
MSB3	YNL293W	JJJ3	P47138	172 aa		5.8	□□□□□ -1.48
MSB3	YNL293W	YDL211C	Q12121	372 aa		5.8	□□□□□ -1.48
MSB3	YNL293W	RPS21B	Q3E754	87 aa	Known RBP	5.8	□□□□□ -1.48
MSB3	YNL293W	RRT15	Q3E811	62 aa		5.8	□□□□□ -1.48
MSB3	YNL293W	YLR302C	O13544	120 aa		5.8	□□□□□ -1.48
MSB3	YNL293W	SWD3	P38123	315 aa		5.8	□□□□□ -1.48
MSB3	YNL293W	MED6	P38782	295 aa		5.8	□□□□□ -1.48
MSB3	YNL293W	EAF6	P47128	113 aa		5.8	□□□□□ -1.48
MSB3	YNL293W	MIC10	Q96VH5	97 aa		5.8	□□□□□ -1.48
MSB3	YNL293W	ROX3	P25046	220 aa		5.79	□□□□□ -1.48
MSB3	YNL293W	SIM1	P40472	476 aa		5.79	□□□□□ -1.48
MSB3	YNL293W	ATP23	P53722	227 aa		5.79	□□□□□ -1.48
MSB3	YNL293W	RPL20A	P0CX23	172 aa	Known RBP	5.78	□□□□□ -1.48
MSB3	YNL293W	RPL20B	P0CX24	172 aa	Predicted RBP	5.78	□□□□□ -1.48
MSB3	YNL293W	RPL16B	P26785	198 aa	Known RBP	5.78	□□□□□ -1.48
MSB3	YNL293W	YFL019C	P43576	117 aa		5.78	□□□□□ -1.48
MSB3	YNL293W	ATP19	P81451	68 aa		5.78	□□□□□ -1.48
MSB3	YNL293W	YBR255C-A	Q3E776	120 aa		5.78	□□□□□ -1.48
MSB3	YNL293W	YEL067C	P39978	195 aa		5.78	□□□□□ -1.48
MSB3	YNL293W	YFL051C	P43552	160 aa		5.78	□□□□□ -1.48
MSB3	YNL293W	YNL234W	P53857	426 aa		5.78	□□□□□ -1.48
MSB3	YNL293W	PIR1	Q03178	341 aa		5.78	□□□□□ -1.48
MSB3	YNL293W	IRC23	Q08416	157 aa		5.78	□□□□□ -1.48
MSB3	YNL293W	DIF1	O13577	133 aa		5.77	□□□□□ -1.49
MSB3	YNL293W	SPT4	P32914	102 aa	Predicted RBP	5.77	□□□□□ -1.49
MSB3	YNL293W	YSY6	P38374	65 aa		5.77	□□□□□ -1.49
MSB3	YNL293W	VHS2	P40463	436 aa		5.77	□□□□□ -1.49
MSB3	YNL293W	PIR5	P46999	287 aa		5.77	□□□□□ -1.49
MSB3	YNL293W	YNR077C	P53758	84 aa		5.77	□□□□□ -1.49
MSB3	YNL293W	SWS2	P53937	143 aa		5.77	□□□□□ -1.49
MSB3	YNL293W	YOL029C	Q08187	201 aa		5.77	□□□□□ -1.49
MSB3	YNL293W	TIM12	P32830	109 aa		5.76	□□□□□ -1.49
MSB3	YNL293W	SMD1	Q02260	146 aa	Predicted RBP	5.76	□□□□□ -1.49
MSB3	YNL293W	HUG1	Q6Q5K6	68 aa		5.76	□□□□□ -1.49
MSB3	YNL293W	YLR365W	Q7LIF2	110 aa		5.76	□□□□□ -1.49
MSB3	YNL293W	RPS8A	P0CX39	200 aa	Known RBP	5.76	□□□□□ -1.49
MSB3	YNL293W	RPS8B	P0CX40	200 aa	Known RBP	5.76	□□□□□ -1.49
MSB3	YNL293W	YIA6	P40556	373 aa		5.76	□□□□□ -1.49
MSB3	YNL293W	UBC13	P52490	153 aa		5.76	□□□□□ -1.49
MSB3	YNL293W	CCH1	P50077	2039 aa		5.75	□□□□□ -1.49
MSB3	YNL293W	RPL16A	P26784	199 aa	Known RBP	5.75	□□□□□ -1.49
MSB3	YNL293W	YNL217W	P40152	326 aa		5.75	□□□□□ -1.49
MSB3	YNL293W	PEX17	P40155	199 aa		5.75	□□□□□ -1.49
MSB3	YNL293W	MIX14	Q04341	121 aa		5.75	□□□□□ -1.49
MSB3	YNL293W	RPL11B	Q3E757	174 aa	Predicted RBP	5.75	□□□□□ -1.49
MSB3	YNL293W	MXR2	P25566	168 aa		5.74	□□□□□ -1.49
MSB3	YNL293W	RTG1	P32607	177 aa		5.74	□□□□□ -1.49
MSB3	YNL293W	PAU7	P39545	55 aa		5.74	□□□□□ -1.49
MSB3	YNL293W	NRM1	P53718	249 aa		5.74	□□□□□ -1.49
MSB3	YNL293W	CUZ1	P53899	274 aa		5.74	□□□□□ -1.49
MSB3	YNL293W	COX17	Q12287	69 aa		5.74	□□□□□ -1.49
MSB3	YNL293W	YPR108W-A	Q3E7B3	70 aa		5.74	□□□□□ -1.49
MSB3	YNL293W	TDA8	Q6B2U8	126 aa		5.74	□□□□□ -1.49
MSB3	YNL293W	PFY1	P07274	126 aa		5.73	□□□□□ -1.49
MSB3	YNL293W	YGR050C	P53231	118 aa		5.73	□□□□□ -1.49
MSB3	YNL293W	YHR213W	P0CI67	198 aa		5.72	□□□□□ -1.49
MSB3	YNL293W	PET8	P38921	284 aa		5.72	□□□□□ -1.49
MSB3	YNL293W	YHR173C	P38864	112 aa		5.72	□□□□□ -1.49
MSB3	YNL293W	YHR180W	P38868	163 aa		5.72	□□□□□ -1.49
MSB3	YNL293W	YOR376W-A	Q3E805	51 aa		5.72	□□□□□ -1.49
MSB3	YNL293W	KEG1	P43614	200 aa		5.71	□□□□□ -1.5
MSB3	YNL293W	PET191	Q02772	108 aa		5.71	□□□□□ -1.5
MSB3	YNL293W	RPL11A	P0C0W9	174 aa	Known RBP	5.7	□□□□□ -1.5
MSB3	YNL293W	RPL32	P38061	130 aa	Known RBP	5.7	□□□□□ -1.5
MSB3	YNL293W	ICY1	Q04329	127 aa		5.7	□□□□□ -1.5
MSB3	YNL293W	YOR268C	Q08734	132 aa		5.7	□□□□□ -1.5
MSB3	YNL293W	YLR112W	Q12130	139 aa		5.7	□□□□□ -1.5
MSB3	YNL293W	YDL022C-A	P0C5L6	82 aa		5.7	□□□□□ -1.5
MSB3	YNL293W	YBR209W	P38311	105 aa		5.7	□□□□□ -1.5
MSB3	YNL293W	YIL029C	P40538	142 aa		5.7	□□□□□ -1.5
MSB3	YNL293W	PGU1	P47180	361 aa		5.7	□□□□□ -1.5
MSB3	YNL293W	PBA1	Q05778	276 aa		5.7	□□□□□ -1.5
MSB3	YNL293W	PBP4	Q07362	185 aa	Known RBP	5.7	□□□□□ -1.5
MSB3	YNL293W	NAG1	Q8TGN9	163 aa		5.7	□□□□□ -1.5
MSB3	YNL293W	DSS4	P32601	143 aa		5.69	□□□□□ -1.5
MSB3	YNL293W	TIM17	P39515	158 aa		5.69	□□□□□ -1.5
MSB3	YNL293W	HUA1	P40325	198 aa		5.69	□□□□□ -1.5
MSB3	YNL293W	PPT2	Q12036	173 aa		5.69	□□□□□ -1.5
MSB3	YNL293W	PCL5	P38794	229 aa		5.68	□□□□□ -1.5
MSB3	YNL293W	VTC1	P40046	129 aa	RIP-Chip data	5.68	□□□□□ -1.5	not detected
MSB3	YNL293W	AIM19	P40502	157 aa		5.68	□□□□□ -1.5
MSB3	YNL293W	TIM22	Q12328	207 aa		5.68	□□□□□ -1.5
MSB3	YNL293W	YDR246W-A	Q3E763	66 aa		5.68	□□□□□ -1.5
MSB3	YNL293W	YPR053C	Q6Q5F3	151 aa		5.68	□□□□□ -1.5

Retrieved 100 of 5,963 RNA–protein pairs in 43.3 ms