RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W RRT1P38192 103 aa0.67□□□□□ -2.3
CDC39YCR093W TOR2P32600 2474 aaKnown RBP0.66□□□□□ -2.3
CDC39YCR093W SUA7P29055 345 aaPredicted RBP0.66□□□□□ -2.3
CDC39YCR093W YHL018WP38744 120 aaPredicted RBP0.66□□□□□ -2.3
CDC39YCR093W FIP1P45976 327 aa0.66□□□□□ -2.3
CDC39YCR093W FIT1Q04433 528 aa0.66□□□□□ -2.3
CDC39YCR093W MSB2P32334 1306 aa0.66□□□□□ -2.3
CDC39YCR093W MRPL11P36521 249 aaPredicted RBP0.66□□□□□ -2.3
CDC39YCR093W YEL014CP39999 101 aa0.66□□□□□ -2.3
CDC39YCR093W ICS3P47034 131 aa0.66□□□□□ -2.3
CDC39YCR093W YJR111CP47148 283 aaKnown RBP0.66□□□□□ -2.3
CDC39YCR093W YIP3P53633 176 aa0.66□□□□□ -2.3
CDC39YCR093W YMR252CQ04814 134 aa0.66□□□□□ -2.3
CDC39YCR093W SPC3Q12133 184 aa0.66□□□□□ -2.3
CDC39YCR093W RPO41P13433 1351 aaKnown RBP0.66□□□□□ -2.3
CDC39YCR093W YER181CP40097 107 aa0.66□□□□□ -2.3
CDC39YCR093W TAO3P40468 2376 aa0.66□□□□□ -2.3
CDC39YCR093W HAP2P06774 265 aa0.66□□□□□ -2.3
CDC39YCR093W COF1Q03048 143 aaKnown RBP0.66□□□□□ -2.3
CDC39YCR093W LHP1P33399 275 aaKnown RBP0.66□□□□□ -2.3
CDC39YCR093W YHR140WP38842 239 aa0.66□□□□□ -2.3
CDC39YCR093W MPC3P53311 146 aa0.66□□□□□ -2.3
CDC39YCR093W RIM9Q04734 239 aa0.66□□□□□ -2.3
CDC39YCR093W SCS22Q6Q595 175 aa0.66□□□□□ -2.3
CDC39YCR093W YBR242WP38331 238 aa0.65□□□□□ -2.3
CDC39YCR093W UBR1P19812 1950 aa0.65□□□□□ -2.31
CDC39YCR093W CNL1Q06333 122 aa0.65□□□□□ -2.31
CDC39YCR093W FRQ1Q06389 190 aa0.65□□□□□ -2.31
CDC39YCR093W ADK1P07170 222 aaKnown RBP0.65□□□□□ -2.31
CDC39YCR093W RPS22AP0C0W1 130 aaKnown RBP0.65□□□□□ -2.31
CDC39YCR093W RNH202Q05635 350 aa0.65□□□□□ -2.31
CDC39YCR093W RPS22BQ3E7Y3 130 aaKnown RBP0.65□□□□□ -2.31
CDC39YCR093W KIN28P06242 306 aa0.65□□□□□ -2.31
CDC39YCR093W FCF2Q12035 217 aaPredicted RBP0.65□□□□□ -2.31
CDC39YCR093W UPS1Q05776 175 aa0.65□□□□□ -2.31
CDC39YCR093W YPR153WQ06537 140 aa0.65□□□□□ -2.31
CDC39YCR093W RIB3Q99258 208 aa0.65□□□□□ -2.31
CDC39YCR093W COX5BP00425 151 aa0.64□□□□□ -2.31
CDC39YCR093W NAT3Q06504 195 aa0.64□□□□□ -2.31
CDC39YCR093W YGR201CP42936 225 aa0.64□□□□□ -2.31
CDC39YCR093W AIM36Q03798 255 aa0.64□□□□□ -2.31
CDC39YCR093W GPI11Q06636 219 aa0.64□□□□□ -2.31
CDC39YCR093W PST2Q12335 198 aaKnown RBP0.64□□□□□ -2.31
CDC39YCR093W YIR021W-AQ3E739 70 aa0.64□□□□□ -2.31
CDC39YCR093W CSN9Q03981 162 aa0.64□□□□□ -2.31
CDC39YCR093W IRC19Q07843 230 aa0.64□□□□□ -2.31
CDC39YCR093W COA3Q3E7B2 85 aa0.64□□□□□ -2.31
CDC39YCR093W STT4P37297 1900 aa0.64□□□□□ -2.31
CDC39YCR093W INO4P13902 151 aa0.64□□□□□ -2.31
CDC39YCR093W FMP23P38231 175 aa0.64□□□□□ -2.31
CDC39YCR093W VMA21P41806 77 aa0.64□□□□□ -2.31
CDC39YCR093W APS2Q00381 147 aa0.64□□□□□ -2.31
CDC39YCR093W RPL33AP05744 107 aaKnown RBP0.63□□□□□ -2.31
CDC39YCR093W CSH1P38287 376 aa0.63□□□□□ -2.31
CDC39YCR093W RPS20P38701 121 aaKnown RBP0.63□□□□□ -2.31
CDC39YCR093W VMA7P39111 118 aa0.63□□□□□ -2.31
CDC39YCR093W YGL230CP53074 147 aa0.63□□□□□ -2.31
CDC39YCR093W MGR2Q02889 113 aa0.63□□□□□ -2.31
CDC39YCR093W ELC1Q03071 99 aa0.63□□□□□ -2.31
CDC39YCR093W SFT2P38166 215 aa0.63□□□□□ -2.31
CDC39YCR093W IPI1P38803 334 aaPredicted RBP0.63□□□□□ -2.31
CDC39YCR093W SED1Q01589 338 aa0.63□□□□□ -2.31
CDC39YCR093W LDB18Q07887 179 aa0.63□□□□□ -2.31
CDC39YCR093W YIL014C-AQ02598 104 aa0.63□□□□□ -2.31
CDC39YCR093W SPC2Q04969 178 aa0.63□□□□□ -2.31
CDC39YCR093W RFU1Q08003 200 aa0.63□□□□□ -2.31
CDC39YCR093W RTR2Q12378 196 aa0.63□□□□□ -2.31
CDC39YCR093W YCL048W-AQ2V2Q2 79 aa0.63□□□□□ -2.31
CDC39YCR093W RPL14AP36105 138 aaKnown RBP0.63□□□□□ -2.31
CDC39YCR093W RPL14BP38754 138 aaKnown RBP0.63□□□□□ -2.31
CDC39YCR093W RAD50P12753 1312 aa0.63□□□□□ -2.31
CDC39YCR093W MRPL31P14063 131 aaPredicted RBP0.62□□□□□ -2.31
CDC39YCR093W YER121WP40076 114 aa0.62□□□□□ -2.31
CDC39YCR093W YFL051CP43552 160 aa0.62□□□□□ -2.31
CDC39YCR093W VPS55P47111 140 aa0.62□□□□□ -2.31
CDC39YCR093W HSP10P38910 106 aa0.62□□□□□ -2.31
CDC39YCR093W YLR296WQ05898 108 aa0.62□□□□□ -2.31
CDC39YCR093W YGL041C-BQ3E750 60 aa0.62□□□□□ -2.31
CDC39YCR093W YCL042WP25572 119 aa0.62□□□□□ -2.31
CDC39YCR093W MPM1P40364 252 aa0.62□□□□□ -2.31
CDC39YCR093W DYN2Q02647 92 aa0.62□□□□□ -2.31
CDC39YCR093W YFL065CP43539 102 aa0.62□□□□□ -2.31
CDC39YCR093W YNL122CP53921 115 aaPredicted RBP0.62□□□□□ -2.31
CDC39YCR093W AIM11P87275 137 aa0.62□□□□□ -2.31
CDC39YCR093W YHR213WP0CI67 198 aa0.61□□□□□ -2.31
CDC39YCR093W GSP1P32835 219 aaKnown RBP0.61□□□□□ -2.31
CDC39YCR093W CYC2P38909 366 aa0.61□□□□□ -2.31
CDC39YCR093W GPI19Q04082 140 aa0.61□□□□□ -2.31
CDC39YCR093W UGX2P32772 223 aa0.61□□□□□ -2.31
CDC39YCR093W YEL067CP39978 195 aa0.61□□□□□ -2.31
CDC39YCR093W ORM1P53224 222 aa0.61□□□□□ -2.31
CDC39YCR093W YDR102CQ03864 110 aa0.61□□□□□ -2.31
CDC39YCR093W YBR056W-AI2HB52 66 aa0.61□□□□□ -2.31
CDC39YCR093W YBR027CP38220 110 aa0.61□□□□□ -2.31
CDC39YCR093W MHF1Q3E835 90 aa0.61□□□□□ -2.31
CDC39YCR093W LAA1P39526 2014 aa0.61□□□□□ -2.31
CDC39YCR093W SPT14P32363 452 aa0.61□□□□□ -2.31
CDC39YCR093W YHL037CP38733 133 aa0.61□□□□□ -2.31
CDC39YCR093W GTT1P40582 234 aa0.61□□□□□ -2.31
CDC39YCR093W GLC8P41818 229 aa0.61□□□□□ -2.31
Retrieved 100 of 5,963 RNA–protein pairs in 18.8 ms