RNA–Protein interactions for RNA: YNL138W-A

YSF3, Transcript of Component of the SF3b subcomplex of the U2 snRNP, yeastyeast

Gene YSF3, Length 258 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
YSF3YNL138W-A ELP6Q04868 273 aa2.08□□□□□ -2.08
YSF3YNL138W-A SHH4Q06236 168 aa2.08□□□□□ -2.08
YSF3YNL138W-A YLR179CQ06252 201 aaKnown RBP2.08□□□□□ -2.08
YSF3YNL138W-A YOR289WQ12012 251 aaPredicted RBP2.08□□□□□ -2.08
YSF3YNL138W-A YOR192C-CQ3E736 78 aa2.08□□□□□ -2.08
YSF3YNL138W-A YOS1Q3E834 85 aa2.08□□□□□ -2.08
YSF3YNL138W-A YPR014CQ6B0W2 109 aa2.08□□□□□ -2.08
YSF3YNL138W-A ATG40Q99325 256 aa2.08□□□□□ -2.08
YSF3YNL138W-A YPL229WQ99395 206 aa2.08□□□□□ -2.08
YSF3YNL138W-A MRPL38P35996 138 aaPredicted RBP2.07□□□□□ -2.08
YSF3YNL138W-A COS8P38723 381 aa2.07□□□□□ -2.08
YSF3YNL138W-A RPF1P38805 295 aaKnown RBP2.07□□□□□ -2.08
YSF3YNL138W-A RGM1Q00453 211 aa2.07□□□□□ -2.08
YSF3YNL138W-A AIM34Q03673 198 aa2.07□□□□□ -2.08
YSF3YNL138W-A NEJ1Q06148 342 aa2.07□□□□□ -2.08
YSF3YNL138W-A YPD1Q07688 167 aa2.07□□□□□ -2.08
YSF3YNL138W-A YBL112CQ3E7Y4 105 aa2.07□□□□□ -2.08
YSF3YNL138W-A MBF1O14467 151 aaKnown RBP2.06□□□□□ -2.08
YSF3YNL138W-A NHP6AP11632 93 aaKnown RBP2.06□□□□□ -2.08
YSF3YNL138W-A ERG24P32462 438 aaKnown RBP2.06□□□□□ -2.08
YSF3YNL138W-A IPI1P38803 334 aaPredicted RBP2.06□□□□□ -2.08
YSF3YNL138W-A GLE2P40066 365 aa2.06□□□□□ -2.08
YSF3YNL138W-A DLS1P40366 167 aa2.06□□□□□ -2.08
YSF3YNL138W-A ERJ5P43613 295 aaPredicted RBP2.06□□□□□ -2.08
YSF3YNL138W-A SKI6P46948 246 aaPredicted RBP2.06□□□□□ -2.08
YSF3YNL138W-A TDA4P47153 279 aa2.06□□□□□ -2.08
YSF3YNL138W-A YNL033WP53964 284 aa2.06□□□□□ -2.08
YSF3YNL138W-A YNL019CP53975 284 aa2.06□□□□□ -2.08
YSF3YNL138W-A SPC24Q04477 213 aa2.06□□□□□ -2.08
YSF3YNL138W-A FCF1Q05498 189 aaPredicted RBP2.06□□□□□ -2.08
YSF3YNL138W-A GPI11Q06636 219 aa2.06□□□□□ -2.08
YSF3YNL138W-A YOL118CQ08259 102 aa2.06□□□□□ -2.08
YSF3YNL138W-A SPO13P23624 291 aa2.05□□□□□ -2.08
YSF3YNL138W-A PEX4P29340 183 aa2.05□□□□□ -2.08
YSF3YNL138W-A IRC22P40006 225 aa2.05□□□□□ -2.08
YSF3YNL138W-A RFC2P40348 353 aa2.05□□□□□ -2.08
YSF3YNL138W-A BUD25P85052 153 aa2.05□□□□□ -2.08
YSF3YNL138W-A DYN2Q02647 92 aa2.05□□□□□ -2.08
YSF3YNL138W-A SGF11Q03067 99 aa2.05□□□□□ -2.08
YSF3YNL138W-A LPP1Q04396 274 aa2.05□□□□□ -2.08
YSF3YNL138W-A FIT1Q04433 528 aa2.05□□□□□ -2.08
YSF3YNL138W-A DGA1Q08650 418 aa2.05□□□□□ -2.08
YSF3YNL138W-A URA5P13298 226 aaKnown RBP2.04□□□□□ -2.08
YSF3YNL138W-A CKS1P20486 150 aaKnown RBP2.04□□□□□ -2.08
YSF3YNL138W-A YCR023CP25351 611 aa2.04□□□□□ -2.08
YSF3YNL138W-A CCS1P40202 249 aaKnown RBP2.04□□□□□ -2.08
YSF3YNL138W-A SNX4P47057 423 aa2.04□□□□□ -2.08
YSF3YNL138W-A ARO8P53090 500 aaKnown RBP2.04□□□□□ -2.08
YSF3YNL138W-A YLR412C-AQ3E742 68 aa2.04□□□□□ -2.08
YSF3YNL138W-A TDA8Q6B2U8 126 aa2.04□□□□□ -2.08
YSF3YNL138W-A RPB3P16370 318 aaKnown RBP2.03□□□□□ -2.08
YSF3YNL138W-A BET1P22804 142 aa2.03□□□□□ -2.08
YSF3YNL138W-A YCR001WP25347 104 aa2.03□□□□□ -2.08
YSF3YNL138W-A RCN1P36054 211 aa2.03□□□□□ -2.08
YSF3YNL138W-A YAR068WP39564 161 aa2.03□□□□□ -2.08
YSF3YNL138W-A YEA4P40004 342 aa2.03□□□□□ -2.08
YSF3YNL138W-A ARP3P47117 449 aaKnown RBP2.03□□□□□ -2.08
YSF3YNL138W-A YMR099CQ03161 297 aaKnown RBP2.03□□□□□ -2.08
YSF3YNL138W-A YOL160WQ08321 113 aa2.03□□□□□ -2.08
YSF3YNL138W-A VAM10Q08474 114 aa2.03□□□□□ -2.08
YSF3YNL138W-A PST2Q12335 198 aaKnown RBP2.03□□□□□ -2.08
YSF3YNL138W-A WIP1Q2V2P8 89 aa2.03□□□□□ -2.08
YSF3YNL138W-A YHR139C-AO13536 103 aa2.02□□□□□ -2.09
YSF3YNL138W-A UBI4P0CG63 381 aaKnown RBP2.02□□□□□ -2.09
YSF3YNL138W-A BUD23P25627 275 aaPredicted RBP2.02□□□□□ -2.09
YSF3YNL138W-A SHE2P36068 246 aaKnown RBP RIP-Chip data2.02□□□□□ -2.09not detected
YSF3YNL138W-A MSA2P36157 363 aa2.02□□□□□ -2.09
YSF3YNL138W-A PDX3P38075 228 aaKnown RBP2.02□□□□□ -2.09
YSF3YNL138W-A SLM6P38343 150 aa2.02□□□□□ -2.09
YSF3YNL138W-A YBR285WP38354 144 aa2.02□□□□□ -2.09
YSF3YNL138W-A OST2P46964 130 aa2.02□□□□□ -2.09
YSF3YNL138W-A YJL027CP47063 138 aaPredicted RBP2.02□□□□□ -2.09
YSF3YNL138W-A SDH7Q04401 133 aa2.02□□□□□ -2.09
YSF3YNL138W-A YPL162CQ12042 273 aa2.02□□□□□ -2.09
YSF3YNL138W-A TSC3Q3E790 80 aa2.02□□□□□ -2.09
YSF3YNL138W-A YLR361C-AQ3E795 98 aa2.02□□□□□ -2.09
YSF3YNL138W-A TFC1P32367 649 aa2.01□□□□□ -2.09
YSF3YNL138W-A UTP30P36144 274 aaKnown RBP2.01□□□□□ -2.09
YSF3YNL138W-A YGR026WP53217 278 aa2.01□□□□□ -2.09
YSF3YNL138W-A YGR039WP53225 103 aa2.01□□□□□ -2.09
YSF3YNL138W-A YDR366CP87287 132 aa2.01□□□□□ -2.09
YSF3YNL138W-A UBC7Q02159 165 aa2.01□□□□□ -2.09
YSF3YNL138W-A COF1Q03048 143 aaKnown RBP2.01□□□□□ -2.09
YSF3YNL138W-A FRQ1Q06389 190 aa2.01□□□□□ -2.09
YSF3YNL138W-A HRD1Q08109 551 aa2.01□□□□□ -2.09
YSF3YNL138W-A RPL9AP05738 191 aaKnown RBP2□□□□□ -2.09
YSF3YNL138W-A YPR170W-BP0C5R9 85 aa2□□□□□ -2.09
YSF3YNL138W-A YCR101CP25607 182 aa2□□□□□ -2.09
YSF3YNL138W-A TRS20P38334 175 aa2□□□□□ -2.09
YSF3YNL138W-A YER134CP40081 178 aa2□□□□□ -2.09
YSF3YNL138W-A ARC15P40518 154 aaRIP-Chip data2□□□□□ -2.09not detected
YSF3YNL138W-A YJR146WP47174 117 aa2□□□□□ -2.09
YSF3YNL138W-A DSK2P48510 373 aa2□□□□□ -2.09
YSF3YNL138W-A CNL1Q06333 122 aa2□□□□□ -2.09
YSF3YNL138W-A YOR268CQ08734 132 aa2□□□□□ -2.09
YSF3YNL138W-A DGK1Q12382 290 aa2□□□□□ -2.09
YSF3YNL138W-A YLR156WP0CE96 114 aa1.99□□□□□ -2.09
YSF3YNL138W-A YLR159WP0CE97 114 aa1.99□□□□□ -2.09
YSF3YNL138W-A YLR161WP0CE98 114 aa1.99□□□□□ -2.09
YSF3YNL138W-A YPT31P38555 223 aaKnown RBP1.99□□□□□ -2.09
Retrieved 100 of 5,963 RNA–protein pairs in 13.2 ms