RNA–Protein interactions for RNA: YKL213C

DOA1, Transcript of WD repeat protein required for ubiquitin-mediated protein degradation, yeast

Gene DOA1, Length 2,148 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DOA1	YKL213C	YMR254C	Q04838	102 aa		4.06	□□□□□ -1.76
DOA1	YKL213C	PRM3	Q08931	133 aa		4.06	□□□□□ -1.76
DOA1	YKL213C	YDR029W	Q12111	104 aa		4.06	□□□□□ -1.76
DOA1	YKL213C	MPD1	Q12404	318 aa	Known RBP	4.06	□□□□□ -1.76
DOA1	YKL213C	RPL39	P04650	51 aa		4.05	□□□□□ -1.76
DOA1	YKL213C	RPS25B	P0C0T4	108 aa	Known RBP	4.05	□□□□□ -1.76
DOA1	YKL213C	CKS1	P20486	150 aa	Known RBP	4.05	□□□□□ -1.76
DOA1	YKL213C	IMP1	P28627	190 aa		4.05	□□□□□ -1.76
DOA1	YKL213C	AGA2	P32781	87 aa		4.05	□□□□□ -1.76
DOA1	YKL213C	VMA11	P32842	164 aa		4.05	□□□□□ -1.76
DOA1	YKL213C	DUG3	P53871	357 aa		4.05	□□□□□ -1.76
DOA1	YKL213C	YMR317W	Q04893	1140 aa		4.05	□□□□□ -1.76
DOA1	YKL213C	STP4	Q07351	490 aa		4.05	□□□□□ -1.76
DOA1	YKL213C	TMC1	Q08422	150 aa	Predicted RBP	4.05	□□□□□ -1.76
DOA1	YKL213C	YOR385W	Q08909	290 aa		4.05	□□□□□ -1.76
DOA1	YKL213C	RPS25A	Q3E792	108 aa	Predicted RBP	4.05	□□□□□ -1.76
DOA1	YKL213C	BPH1	P25356	2167 aa		4.05	□□□□□ -1.76
DOA1	YKL213C	ADH1	P00330	348 aa	Known RBP	4.04	□□□□□ -1.76
DOA1	YKL213C	YKR070W	P36151	352 aa	Known RBP	4.04	□□□□□ -1.76
DOA1	YKL213C	MRPL27	P36526	146 aa	Predicted RBP	4.04	□□□□□ -1.76
DOA1	YKL213C	CCS1	P40202	249 aa	Known RBP	4.04	□□□□□ -1.76
DOA1	YKL213C	YMR082C	Q04276	118 aa		4.04	□□□□□ -1.76
DOA1	YKL213C	YMR103C	Q04436	120 aa		4.04	□□□□□ -1.76
DOA1	YKL213C	YDR114C	Q04597	100 aa		4.04	□□□□□ -1.76
DOA1	YKL213C	YBL112C	Q3E7Y4	105 aa		4.04	□□□□□ -1.76
DOA1	YKL213C	Q0297	Q9ZZV8	51 aa		4.04	□□□□□ -1.76
DOA1	YKL213C	ECM12	O13529	151 aa		4.04	□□□□□ -1.76
DOA1	YKL213C	NNK1	P36003	928 aa		4.04	□□□□□ -1.76
DOA1	YKL213C	ATP23	P53722	227 aa		4.04	□□□□□ -1.76
DOA1	YKL213C	TEX1	P53851	422 aa	Known RBP	4.04	□□□□□ -1.76
DOA1	YKL213C	YMR166C	Q03829	368 aa		4.04	□□□□□ -1.76
DOA1	YKL213C	SHH4	Q06236	168 aa		4.04	□□□□□ -1.76
DOA1	YKL213C	QRI5	P32344	111 aa		4.03	□□□□□ -1.76
DOA1	YKL213C	YBR144C	P34215	104 aa		4.03	□□□□□ -1.76
DOA1	YKL213C	HST4	P53688	370 aa		4.03	□□□□□ -1.76
DOA1	YKL213C	ALG9	P53868	555 aa	Known RBP	4.03	□□□□□ -1.76
DOA1	YKL213C	YMR090W	Q04304	227 aa	Known RBP	4.03	□□□□□ -1.76
DOA1	YKL213C	FIT1	Q04433	528 aa		4.03	□□□□□ -1.76
DOA1	YKL213C	YPS3	Q12303	508 aa		4.03	□□□□□ -1.76
DOA1	YKL213C	ATG40	Q99325	256 aa		4.03	□□□□□ -1.76
DOA1	YKL213C	RPS2	P25443	254 aa	Known RBP	4.03	□□□□□ -1.76
DOA1	YKL213C	PAU15	P40585	124 aa		4.03	□□□□□ -1.76
DOA1	YKL213C	SYM1	Q06563	197 aa		4.03	□□□□□ -1.76
DOA1	YKL213C	SME1	Q12330	94 aa	Predicted RBP	4.03	□□□□□ -1.76
DOA1	YKL213C	SRP21	P32342	167 aa		4.02	□□□□□ -1.77
DOA1	YKL213C	SWD3	P38123	315 aa		4.02	□□□□□ -1.77
DOA1	YKL213C	CTR2	P38865	189 aa		4.02	□□□□□ -1.77
DOA1	YKL213C	MST28	P39552	234 aa		4.02	□□□□□ -1.77
DOA1	YKL213C	CWP2	P43497	92 aa		4.02	□□□□□ -1.77
DOA1	YKL213C	BET5	Q03630	159 aa		4.02	□□□□□ -1.77
DOA1	YKL213C	MRP17	P28778	131 aa		4.01	□□□□□ -1.77
DOA1	YKL213C	ATX1	P38636	73 aa		4.01	□□□□□ -1.77
DOA1	YKL213C	YGR164W	P53291	111 aa		4.01	□□□□□ -1.77
DOA1	YKL213C	YPL162C	Q12042	273 aa		4.01	□□□□□ -1.77
DOA1	YKL213C	YCL048W-A	Q2V2Q2	79 aa		4.01	□□□□□ -1.77
DOA1	YKL213C	YOR192C-C	Q3E736	78 aa		4.01	□□□□□ -1.77
DOA1	YKL213C	YLR365W	Q7LIF2	110 aa		4.01	□□□□□ -1.77
DOA1	YKL213C	MRS3	P10566	314 aa		4.01	□□□□□ -1.77
DOA1	YKL213C	TOM40	P23644	387 aa	Known RBP	4.01	□□□□□ -1.77
DOA1	YKL213C	RPB7	P34087	171 aa		4.01	□□□□□ -1.77
DOA1	YKL213C	YIA6	P40556	373 aa		4.01	□□□□□ -1.77
DOA1	YKL213C	NCA3	P46955	337 aa		4.01	□□□□□ -1.77
DOA1	YKL213C	YNR064C	P53750	290 aa		4.01	□□□□□ -1.77
DOA1	YKL213C	AVO2	Q04749	426 aa		4.01	□□□□□ -1.77
DOA1	YKL213C	YMR105W-A	Q8TGS8	64 aa		4.01	□□□□□ -1.77
DOA1	YKL213C	URA2	P07259	2214 aa	Known RBP	4	□□□□□ -1.77
DOA1	YKL213C	YHR138C	P38841	114 aa	Predicted RBP	4	□□□□□ -1.77
DOA1	YKL213C	YHR140W	P38842	239 aa		4	□□□□□ -1.77
DOA1	YKL213C	YAR029W	P39549	74 aa		4	□□□□□ -1.77
DOA1	YKL213C	CYB5	P40312	120 aa		4	□□□□□ -1.77
DOA1	YKL213C	YIR020C	P40575	100 aa		4	□□□□□ -1.77
DOA1	YKL213C	GPI2	P46961	280 aa		4	□□□□□ -1.77
DOA1	YKL213C	PIR5	P46999	287 aa		4	□□□□□ -1.77
DOA1	YKL213C	RFM1	Q12192	310 aa		4	□□□□□ -1.77
DOA1	YKL213C	POR1	P04840	283 aa	Known RBP	4	□□□□□ -1.77
DOA1	YKL213C	AQY1	P0CD91	305 aa		4	□□□□□ -1.77
DOA1	YKL213C	ALK2	P32789	676 aa	Predicted RBP	4	□□□□□ -1.77
DOA1	YKL213C	YKL102C	P34249	101 aa		4	□□□□□ -1.77
DOA1	YKL213C	YNL198C	P40166	100 aa		4	□□□□□ -1.77
DOA1	YKL213C	CAX4	P53223	239 aa		4	□□□□□ -1.77
DOA1	YKL213C	YOL118C	Q08259	102 aa		4	□□□□□ -1.77
DOA1	YKL213C	YPR108W-A	Q3E7B3	70 aa		4	□□□□□ -1.77
DOA1	YKL213C	RPL11A	P0C0W9	174 aa	Known RBP	3.99	□□□□□ -1.77
DOA1	YKL213C	YGL010W	P25338	174 aa		3.99	□□□□□ -1.77
DOA1	YKL213C	RPL14A	P36105	138 aa	Known RBP	3.99	□□□□□ -1.77
DOA1	YKL213C	MIX23	P38162	196 aa		3.99	□□□□□ -1.77
DOA1	YKL213C	GPI18	P38211	433 aa		3.99	□□□□□ -1.77
DOA1	YKL213C	GCV3	P39726	170 aa	Predicted RBP	3.99	□□□□□ -1.77
DOA1	YKL213C	IRC22	P40006	225 aa		3.99	□□□□□ -1.77
DOA1	YKL213C	NCE103	P53615	221 aa		3.99	□□□□□ -1.77
DOA1	YKL213C	RPL21A	Q02753	160 aa	Known RBP	3.99	□□□□□ -1.77
DOA1	YKL213C	RIM9	Q04734	239 aa		3.99	□□□□□ -1.77
DOA1	YKL213C	ANT1	Q06497	328 aa		3.99	□□□□□ -1.77
DOA1	YKL213C	DGA1	Q08650	418 aa		3.99	□□□□□ -1.77
DOA1	YKL213C	YDL009C	Q12210	107 aa		3.99	□□□□□ -1.77
DOA1	YKL213C	RPL21B	Q12672	160 aa	Known RBP	3.99	□□□□□ -1.77
DOA1	YKL213C	RPL11B	Q3E757	174 aa	Predicted RBP	3.99	□□□□□ -1.77
DOA1	YKL213C	TRP1	P00912	224 aa		3.98	□□□□□ -1.77
DOA1	YKL213C	PAU19	P0CE85	124 aa		3.98	□□□□□ -1.77
DOA1	YKL213C	PAU21	P0CE86	164 aa		3.98	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 18.3 ms