RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W HAP3P13434 144 aa0.71□□□□□ -2.3
CDC39YCR093W YPL073CP40323 161 aa0.71□□□□□ -2.3
CDC39YCR093W YHR086W-AQ3E746 53 aa0.71□□□□□ -2.3
CDC39YCR093W PHO85P17157 305 aa0.71□□□□□ -2.3
CDC39YCR093W YJL027CP47063 138 aaPredicted RBP0.71□□□□□ -2.3
CDC39YCR093W YMR099CQ03161 297 aaKnown RBP0.71□□□□□ -2.3
CDC39YCR093W LIP1Q03579 150 aa0.71□□□□□ -2.3
CDC39YCR093W GRX3Q03835 250 aa0.71□□□□□ -2.3
CDC39YCR093W GAL83Q04739 417 aa0.71□□□□□ -2.3
CDC39YCR093W YEL028WP39989 153 aa0.71□□□□□ -2.3
CDC39YCR093W LSM8P47093 109 aaKnown RBP0.71□□□□□ -2.3
CDC39YCR093W EMC4P53073 190 aa0.71□□□□□ -2.3
CDC39YCR093W YGL204CP53089 101 aa0.71□□□□□ -2.3
CDC39YCR093W ATG41Q12048 136 aa0.71□□□□□ -2.3
CDC39YCR093W HPA3P39979 161 aa0.71□□□□□ -2.3
CDC39YCR093W YNR064CP53750 290 aa0.71□□□□□ -2.3
CDC39YCR093W SYM1Q06563 197 aa0.71□□□□□ -2.3
CDC39YCR093W MED11Q99278 115 aa0.71□□□□□ -2.3
CDC39YCR093W DCV1P43595 202 aa0.7□□□□□ -2.3
CDC39YCR093W MOG1P47123 218 aa0.7□□□□□ -2.3
CDC39YCR093W YGL193CP53097 103 aa0.7□□□□□ -2.3
CDC39YCR093W ELP6Q04868 273 aa0.7□□□□□ -2.3
CDC39YCR093W KRE5P22023 1365 aa0.7□□□□□ -2.3
CDC39YCR093W HTD2P38790 280 aaKnown RBP0.7□□□□□ -2.3
CDC39YCR093W PAC10P48363 199 aa0.7□□□□□ -2.3
CDC39YCR093W SOL1P50278 321 aa0.7□□□□□ -2.3
CDC39YCR093W IGO1P53897 168 aa0.7□□□□□ -2.3
CDC39YCR093W NMA1Q06178 401 aaKnown RBP0.7□□□□□ -2.3
CDC39YCR093W SPS2P08459 502 aa0.7□□□□□ -2.3
CDC39YCR093W DER1P38307 211 aa0.7□□□□□ -2.3
CDC39YCR093W VMA22P38784 181 aa0.7□□□□□ -2.3
CDC39YCR093W YEL073CP39974 107 aa0.7□□□□□ -2.3
CDC39YCR093W NSL1Q12143 216 aa0.7□□□□□ -2.3
CDC39YCR093W Q0144Q9ZZW2 109 aa0.7□□□□□ -2.3
CDC39YCR093W TIR1P10863 254 aa0.7□□□□□ -2.3
CDC39YCR093W NSE4P43124 402 aa0.7□□□□□ -2.3
CDC39YCR093W YGR042WP53227 271 aa0.7□□□□□ -2.3
CDC39YCR093W DIG2Q03373 323 aaKnown RBP0.7□□□□□ -2.3
CDC39YCR093W SLO1Q3E784 85 aa0.7□□□□□ -2.3
CDC39YCR093W SUI1P32911 108 aaKnown RBP0.69□□□□□ -2.3
CDC39YCR093W KNH1P50112 268 aa0.69□□□□□ -2.3
CDC39YCR093W YNL033WP53964 284 aa0.69□□□□□ -2.3
CDC39YCR093W UBC7Q02159 165 aa0.69□□□□□ -2.3
CDC39YCR093W PAM17P36147 197 aa0.69□□□□□ -2.3
CDC39YCR093W TMA23Q03525 211 aa0.69□□□□□ -2.3
CDC39YCR093W YHP1Q04116 353 aa0.69□□□□□ -2.3
CDC39YCR093W NKP2Q06162 153 aa0.69□□□□□ -2.3
CDC39YCR093W CSF1Q12150 2958 aa0.69□□□□□ -2.3
CDC39YCR093W SRY1P36007 326 aa0.69□□□□□ -2.3
CDC39YCR093W YDC1Q02896 317 aa0.69□□□□□ -2.3
CDC39YCR093W FMN1Q03778 218 aa0.69□□□□□ -2.3
CDC39YCR093W SWC7Q06707 132 aa0.69□□□□□ -2.3
CDC39YCR093W YNR077CP53758 84 aa0.69□□□□□ -2.3
CDC39YCR093W GRX8Q05926 109 aa0.69□□□□□ -2.3
CDC39YCR093W PFY1P07274 126 aa0.69□□□□□ -2.3
CDC39YCR093W RPL30P14120 105 aaKnown RBP0.69□□□□□ -2.3
CDC39YCR093W YFL019CP43576 117 aa0.69□□□□□ -2.3
CDC39YCR093W YNL019CP53975 284 aa0.69□□□□□ -2.3
CDC39YCR093W ANB1P19211 157 aa0.68□□□□□ -2.3
CDC39YCR093W YGR017WP53210 297 aa0.68□□□□□ -2.3
CDC39YCR093W YHR213W-BQ8TGK1 99 aa0.68□□□□□ -2.3
CDC39YCR093W ATP15P21306 62 aa0.68□□□□□ -2.3
CDC39YCR093W YAR064WP39563 99 aa0.68□□□□□ -2.3
CDC39YCR093W SMD3P43321 101 aaKnown RBP0.68□□□□□ -2.3
CDC39YCR093W YDR278CQ05612 105 aa0.68□□□□□ -2.3
CDC39YCR093W KEI1Q06346 221 aa0.68□□□□□ -2.3
CDC39YCR093W YNL277W-AQ3E7Z0 62 aa0.68□□□□□ -2.3
CDC39YCR093W PET20Q99373 253 aa0.68□□□□□ -2.3
CDC39YCR093W VAR1P02381 398 aa0.68□□□□□ -2.3
CDC39YCR093W DIE2P50076 525 aa0.68□□□□□ -2.3
CDC39YCR093W NHP6AP11632 93 aaKnown RBP0.68□□□□□ -2.3
CDC39YCR093W YPT31P38555 223 aaKnown RBP0.68□□□□□ -2.3
CDC39YCR093W RCF2P53721 224 aa0.68□□□□□ -2.3
CDC39YCR093W YPR114WQ06107 315 aa0.68□□□□□ -2.3
CDC39YCR093W YCL012CQ8J0M4 134 aa0.68□□□□□ -2.3
CDC39YCR093W RPL2AP0CX45 254 aaKnown RBP0.67□□□□□ -2.3
CDC39YCR093W RPL2BP0CX46 254 aaKnown RBP0.67□□□□□ -2.3
CDC39YCR093W ETR1P38071 380 aa0.67□□□□□ -2.3
CDC39YCR093W PET54P10834 293 aa0.67□□□□□ -2.3
CDC39YCR093W SRP21P32342 167 aa0.67□□□□□ -2.3
CDC39YCR093W UPS2P35200 230 aa0.67□□□□□ -2.3
CDC39YCR093W MRPL24P36525 258 aaPredicted RBP0.67□□□□□ -2.3
CDC39YCR093W EST3Q03096 181 aa0.67□□□□□ -2.3
CDC39YCR093W YLR162WQ06235 118 aa0.67□□□□□ -2.3
CDC39YCR093W YOR381W-AQ3E804 55 aa0.67□□□□□ -2.3
CDC39YCR093W DDP1Q99321 188 aaKnown RBP0.67□□□□□ -2.3
CDC39YCR093W MYO1P08964 1928 aa0.67□□□□□ -2.3
CDC39YCR093W PHO13P19881 312 aa0.67□□□□□ -2.3
CDC39YCR093W HSP12P22943 109 aaKnown RBP0.67□□□□□ -2.3
CDC39YCR093W ATP20Q12233 115 aa0.67□□□□□ -2.3
CDC39YCR093W YPL229WQ99395 206 aa0.67□□□□□ -2.3
CDC39YCR093W RPL36BO14455 100 aaKnown RBP0.67□□□□□ -2.3
CDC39YCR093W QCR6P00127 147 aa0.67□□□□□ -2.3
CDC39YCR093W RPL36AP05745 100 aaPredicted RBP0.67□□□□□ -2.3
CDC39YCR093W YKR070WP36151 352 aaKnown RBP0.67□□□□□ -2.3
CDC39YCR093W MRPL15P36523 253 aa0.67□□□□□ -2.3
CDC39YCR093W SDH7Q04401 133 aa0.67□□□□□ -2.3
CDC39YCR093W CSI2Q08054 341 aa0.67□□□□□ -2.3
CDC39YCR093W COX8P04039 78 aa0.67□□□□□ -2.3
CDC39YCR093W UBI4P0CG63 381 aaKnown RBP0.67□□□□□ -2.3
Retrieved 100 of 5,963 RNA–protein pairs in 57.4 ms