RNA–Protein interactions for RNA: YBR170C

NPL4, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene NPL4, Length 1,743 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NPL4YBR170C ARL3Q02804 198 aa2.4□□□□□ -2.02
NPL4YBR170C ADK1P07170 222 aaKnown RBP2.39□□□□□ -2.03
NPL4YBR170C FPR1P20081 114 aaKnown RBP2.39□□□□□ -2.03
NPL4YBR170C MRPL44P19956 98 aa2.39□□□□□ -2.03
NPL4YBR170C YBR242WP38331 238 aa2.39□□□□□ -2.03
NPL4YBR170C ACC1Q00955 2233 aaKnown RBP2.38□□□□□ -2.03
NPL4YBR170C RPB11P38902 120 aa2.38□□□□□ -2.03
NPL4YBR170C BAT2P47176 376 aaKnown RBP2.38□□□□□ -2.03
NPL4YBR170C MPC1P53157 130 aaKnown RBP2.38□□□□□ -2.03
NPL4YBR170C AIM36Q03798 255 aa2.38□□□□□ -2.03
NPL4YBR170C LDB18Q07887 179 aa2.38□□□□□ -2.03
NPL4YBR170C NAT5Q08689 176 aa2.38□□□□□ -2.03
NPL4YBR170C YOR376W-AQ3E805 51 aa2.38□□□□□ -2.03
NPL4YBR170C CDC39P25655 2108 aaKnown RBP2.38□□□□□ -2.03
NPL4YBR170C RUB1Q03919 77 aa2.37□□□□□ -2.03
NPL4YBR170C KIN28P06242 306 aa2.37□□□□□ -2.03
NPL4YBR170C DCV1P43595 202 aa2.37□□□□□ -2.03
NPL4YBR170C FUN14P18411 198 aa2.36□□□□□ -2.03
NPL4YBR170C PRE1P22141 198 aaKnown RBP2.36□□□□□ -2.03
NPL4YBR170C YGL149WP53116 101 aa2.36□□□□□ -2.03
NPL4YBR170C BRP1P53194 125 aa2.35□□□□□ -2.03
NPL4YBR170C UBR2Q07963 1872 aa2.35□□□□□ -2.03
NPL4YBR170C YPL067CQ02754 198 aa2.34□□□□□ -2.03
NPL4YBR170C YLR042CQ07990 161 aa2.34□□□□□ -2.03
NPL4YBR170C FCF2Q12035 217 aaPredicted RBP2.34□□□□□ -2.03
NPL4YBR170C MHF1Q3E835 90 aa2.34□□□□□ -2.03
NPL4YBR170C TCB3Q03640 1545 aaKnown RBP2.34□□□□□ -2.03
NPL4YBR170C YFL051CP43552 160 aa2.34□□□□□ -2.04
NPL4YBR170C PAU21P0CE86 164 aa2.33□□□□□ -2.04
NPL4YBR170C PAU22P0CE87 164 aa2.33□□□□□ -2.04
NPL4YBR170C NMT1P14743 455 aa2.33□□□□□ -2.04
NPL4YBR170C HYP2P23301 157 aaKnown RBP2.33□□□□□ -2.04
NPL4YBR170C LHP1P33399 275 aaKnown RBP2.33□□□□□ -2.04
NPL4YBR170C YKL044WP36092 106 aa2.33□□□□□ -2.04
NPL4YBR170C SRL3P36167 246 aa2.33□□□□□ -2.04
NPL4YBR170C YBR027CP38220 110 aa2.33□□□□□ -2.04
NPL4YBR170C HSP10P38910 106 aa2.33□□□□□ -2.04
NPL4YBR170C ERV14P53173 138 aa2.33□□□□□ -2.04
NPL4YBR170C FIT1Q04433 528 aa2.33□□□□□ -2.04
NPL4YBR170C KTI11Q3E840 82 aa2.33□□□□□ -2.04
NPL4YBR170C MMS22Q06164 1454 aa2.33□□□□□ -2.04
NPL4YBR170C AQY2P0CD90 149 aa2.32□□□□□ -2.04
NPL4YBR170C MRPL15P36523 253 aa2.32□□□□□ -2.04
NPL4YBR170C ATG8P38182 117 aaRIP-Chip data2.32□□□□□ -2.04not detected
NPL4YBR170C YPR203WQ08994 102 aa2.32□□□□□ -2.04
NPL4YBR170C ANB1P19211 157 aa2.31□□□□□ -2.04
NPL4YBR170C SEC59P20048 519 aa2.31□□□□□ -2.04
NPL4YBR170C GTT2Q12390 233 aa2.31□□□□□ -2.04
NPL4YBR170C UFD4P33202 1483 aa2.31□□□□□ -2.04
NPL4YBR170C YAR029WP39549 74 aa2.31□□□□□ -2.04
NPL4YBR170C SNF11P38956 169 aa2.3□□□□□ -2.04
NPL4YBR170C YER137CP40083 148 aaKnown RBP2.3□□□□□ -2.04
NPL4YBR170C YOR097CQ12274 175 aaPredicted RBP2.3□□□□□ -2.04
NPL4YBR170C SPP41P38904 1435 aa2.29□□□□□ -2.04
NPL4YBR170C YHR212W-AP0CX91 67 aa2.29□□□□□ -2.04
NPL4YBR170C VAM10Q08474 114 aa2.29□□□□□ -2.04
NPL4YBR170C MDS3P53094 1487 aa2.29□□□□□ -2.04
NPL4YBR170C XRN1P22147 1528 aaKnown RBP2.29□□□□□ -2.04
NPL4YBR170C YGL014C-AP0C5N1 53 aa2.28□□□□□ -2.04
NPL4YBR170C YER039C-AP0CD97 72 aa2.28□□□□□ -2.04
NPL4YBR170C RPL40AP0CH08 128 aaKnown RBP2.28□□□□□ -2.04
NPL4YBR170C RPL40BP0CH09 128 aaKnown RBP2.28□□□□□ -2.04
NPL4YBR170C SED1Q01589 338 aa2.28□□□□□ -2.04
NPL4YBR170C GPI19Q04082 140 aa2.28□□□□□ -2.04
NPL4YBR170C BEM2P39960 2167 aaKnown RBP2.28□□□□□ -2.04
NPL4YBR170C RTC6O14464 93 aa2.28□□□□□ -2.05
NPL4YBR170C RPL33AP05744 107 aaKnown RBP2.28□□□□□ -2.05
NPL4YBR170C HAP3P13434 144 aa2.28□□□□□ -2.05
NPL4YBR170C YHL037CP38733 133 aa2.28□□□□□ -2.05
NPL4YBR170C PAM16P42949 149 aa2.28□□□□□ -2.05
NPL4YBR170C MRPL11P36521 249 aaPredicted RBP2.27□□□□□ -2.05
NPL4YBR170C YFR035CP43608 114 aa2.27□□□□□ -2.05
NPL4YBR170C SEN15Q04675 128 aa2.27□□□□□ -2.05
NPL4YBR170C YCR099CP25657 155 aa2.26□□□□□ -2.05
NPL4YBR170C TRM732Q03496 1420 aa2.26□□□□□ -2.05
NPL4YBR170C RTR2Q12378 196 aa2.26□□□□□ -2.05
NPL4YBR170C YHR213WP0CI67 198 aa2.25□□□□□ -2.05
NPL4YBR170C UTP11P34247 250 aaPredicted RBP2.25□□□□□ -2.05
NPL4YBR170C TDA2P40045 126 aa2.25□□□□□ -2.05
NPL4YBR170C RGI1P40043 161 aaPredicted RBP2.25□□□□□ -2.05
NPL4YBR170C YLR296WQ05898 108 aa2.25□□□□□ -2.05
NPL4YBR170C MON2P48563 1636 aaPredicted RBP2.24□□□□□ -2.05
NPL4YBR170C AIM18P38884 321 aa2.24□□□□□ -2.05
NPL4YBR170C LST8P41318 303 aa2.24□□□□□ -2.05
NPL4YBR170C GSP1P32835 219 aaKnown RBP2.23□□□□□ -2.05
NPL4YBR170C YMR122CQ03879 124 aa2.23□□□□□ -2.05
NPL4YBR170C GSC2P40989 1895 aa2.23□□□□□ -2.05
NPL4YBR170C RPS12P48589 143 aaKnown RBP2.22□□□□□ -2.05
NPL4YBR170C PEP1P32319 1579 aa2.22□□□□□ -2.05
NPL4YBR170C NUP170P38181 1502 aa2.22□□□□□ -2.05
NPL4YBR170C EMP24P32803 203 aaKnown RBP2.22□□□□□ -2.05
NPL4YBR170C SRB8P25648 1427 aa2.22□□□□□ -2.05
NPL4YBR170C SNT2P53127 1403 aa2.22□□□□□ -2.05
NPL4YBR170C RPL36BO14455 100 aaKnown RBP2.21□□□□□ -2.06
NPL4YBR170C RPL36AP05745 100 aaPredicted RBP2.21□□□□□ -2.06
NPL4YBR170C YHR130CP38834 111 aa2.21□□□□□ -2.06
NPL4YBR170C PRM3Q08931 133 aa2.21□□□□□ -2.06
NPL4YBR170C BUD4P47136 1447 aa2.21□□□□□ -2.06
NPL4YBR170C YLR419WQ06698 1435 aaKnown RBP2.21□□□□□ -2.06
NPL4YBR170C PAU12P53343 120 aa2.2□□□□□ -2.06
Retrieved 100 of 5,963 RNA–protein pairs in 63.6 ms