RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	ATG40	Q99325	256 aa		3.37	□□□□□ -1.87
CAF16	YFL028C	SEN2	P16658	377 aa		3.36	□□□□□ -1.87
CAF16	YFL028C	TOM40	P23644	387 aa	Known RBP	3.36	□□□□□ -1.87
CAF16	YFL028C	VMA11	P32842	164 aa		3.36	□□□□□ -1.87
CAF16	YFL028C	PRY2	P36110	329 aa		3.36	□□□□□ -1.87
CAF16	YFL028C	YKE4	P40544	346 aa		3.36	□□□□□ -1.87
CAF16	YFL028C	AIM25	P47140	327 aa		3.36	□□□□□ -1.87
CAF16	YFL028C	MGA1	P53050	456 aa		3.36	□□□□□ -1.87
CAF16	YFL028C	ARO8	P53090	500 aa	Known RBP	3.36	□□□□□ -1.87
CAF16	YFL028C	HSK3	P69852	69 aa		3.36	□□□□□ -1.87
CAF16	YFL028C	SYM1	Q06563	197 aa		3.36	□□□□□ -1.87
CAF16	YFL028C	YOL118C	Q08259	102 aa		3.36	□□□□□ -1.87
CAF16	YFL028C	YOR385W	Q08909	290 aa		3.36	□□□□□ -1.87
CAF16	YFL028C	YOR097C	Q12274	175 aa	Predicted RBP	3.36	□□□□□ -1.87
CAF16	YFL028C	PET20	Q99373	253 aa		3.36	□□□□□ -1.87
CAF16	YFL028C	YPL229W	Q99395	206 aa		3.36	□□□□□ -1.87
CAF16	YFL028C	SPS2	P08459	502 aa		3.35	□□□□□ -1.87
CAF16	YFL028C	ATG22	P25568	528 aa		3.35	□□□□□ -1.87
CAF16	YFL028C	BUD23	P25627	275 aa	Predicted RBP	3.35	□□□□□ -1.87
CAF16	YFL028C	RPB7	P34087	171 aa		3.35	□□□□□ -1.87
CAF16	YFL028C	SOL1	P50278	321 aa		3.35	□□□□□ -1.87
CAF16	YFL028C	TOS8	P53147	276 aa		3.35	□□□□□ -1.87
CAF16	YFL028C	APJ1	P53940	528 aa		3.35	□□□□□ -1.87
CAF16	YFL028C	FIT1	Q04433	528 aa		3.35	□□□□□ -1.87
CAF16	YFL028C	YDL012C	Q12489	107 aa		3.35	□□□□□ -1.87
CAF16	YFL028C	YLR365W	Q7LIF2	110 aa		3.35	□□□□□ -1.87
CAF16	YFL028C	HTB1	P02293	131 aa	Known RBP	3.34	□□□□□ -1.87
CAF16	YFL028C	HTB2	P02294	131 aa		3.34	□□□□□ -1.87
CAF16	YFL028C	CPR5	P35176	225 aa		3.34	□□□□□ -1.87
CAF16	YFL028C	PAN3	P36102	679 aa	Predicted RBP	3.34	□□□□□ -1.87
CAF16	YFL028C	YBR242W	P38331	238 aa		3.34	□□□□□ -1.87
CAF16	YFL028C	LSM1	P47017	172 aa	Known RBP	3.34	□□□□□ -1.87
CAF16	YFL028C	HAM1	P47119	197 aa	Known RBP	3.34	□□□□□ -1.87
CAF16	YFL028C	FCF1	Q05498	189 aa	Predicted RBP	3.34	□□□□□ -1.87
CAF16	YFL028C	NOC4	Q06512	552 aa	Predicted RBP	3.34	□□□□□ -1.87
CAF16	YFL028C	PRP11	Q07350	266 aa	Predicted RBP	3.34	□□□□□ -1.87
CAF16	YFL028C	YPR108W-A	Q3E7B3	70 aa		3.34	□□□□□ -1.87
CAF16	YFL028C	TRR1	P29509	319 aa	Known RBP	3.33	□□□□□ -1.88
CAF16	YFL028C	BMT5	P40493	336 aa		3.33	□□□□□ -1.88
CAF16	YFL028C	TTI2	P47168	421 aa		3.33	□□□□□ -1.88
CAF16	YFL028C	THI74	Q04083	370 aa		3.33	□□□□□ -1.88
CAF16	YFL028C	RIM9	Q04734	239 aa		3.33	□□□□□ -1.88
CAF16	YFL028C	YPR195C	Q06594	109 aa		3.33	□□□□□ -1.88
CAF16	YFL028C	SCP1	Q08873	200 aa		3.33	□□□□□ -1.88
CAF16	YFL028C	BBP1	Q12365	385 aa		3.33	□□□□□ -1.88
CAF16	YFL028C	DGK1	Q12382	290 aa		3.33	□□□□□ -1.88
CAF16	YFL028C	RDI1	Q12434	202 aa		3.33	□□□□□ -1.88
CAF16	YFL028C	TCA17	P32613	152 aa		3.32	□□□□□ -1.88
CAF16	YFL028C	UTP30	P36144	274 aa	Known RBP	3.32	□□□□□ -1.88
CAF16	YFL028C	MSA2	P36157	363 aa		3.32	□□□□□ -1.88
CAF16	YFL028C	IKI1	P38874	309 aa		3.32	□□□□□ -1.88
CAF16	YFL028C	FEX2	Q08991	375 aa		3.32	□□□□□ -1.88
CAF16	YFL028C	HUG1	Q6Q5K6	68 aa		3.32	□□□□□ -1.88
CAF16	YFL028C	MRP17	P28778	131 aa		3.31	□□□□□ -1.88
CAF16	YFL028C	SRY1	P36007	326 aa		3.31	□□□□□ -1.88
CAF16	YFL028C	COS8	P38723	381 aa		3.31	□□□□□ -1.88
CAF16	YFL028C	PEX17	P40155	199 aa		3.31	□□□□□ -1.88
CAF16	YFL028C	ARR2	Q06597	130 aa		3.31	□□□□□ -1.88
CAF16	YFL028C	FEX1	Q08913	375 aa		3.31	□□□□□ -1.88
CAF16	YFL028C	CCW14	O13547	238 aa		3.3	□□□□□ -1.88
CAF16	YFL028C	QCR2	P07257	368 aa		3.3	□□□□□ -1.88
CAF16	YFL028C	PUT1	P09368	476 aa		3.3	□□□□□ -1.88
CAF16	YFL028C	GRX2	P17695	143 aa	Known RBP	3.3	□□□□□ -1.88
CAF16	YFL028C	ROX3	P25046	220 aa		3.3	□□□□□ -1.88
CAF16	YFL028C	SPS18	P32572	300 aa		3.3	□□□□□ -1.88
CAF16	YFL028C	YER188W	P40103	239 aa		3.3	□□□□□ -1.88
CAF16	YFL028C	MIX17	Q03667	156 aa		3.3	□□□□□ -1.88
CAF16	YFL028C	LPP1	Q04396	274 aa		3.3	□□□□□ -1.88
CAF16	YFL028C	YPD1	Q07688	167 aa		3.3	□□□□□ -1.88
CAF16	YFL028C	ATO3	Q12359	275 aa		3.3	□□□□□ -1.88
CAF16	YFL028C	AGC1	Q12482	902 aa		3.3	□□□□□ -1.88
CAF16	YFL028C	BOL1	Q3E793	110 aa		3.3	□□□□□ -1.88
CAF16	YFL028C	YHR139C-A	O13536	103 aa		3.29	□□□□□ -1.88
CAF16	YFL028C	RPL27A	P0C2H6	136 aa	Known RBP	3.29	□□□□□ -1.88
CAF16	YFL028C	RPL27B	P0C2H7	136 aa	Known RBP	3.29	□□□□□ -1.88
CAF16	YFL028C	NOP1	P15646	327 aa	Known RBP	3.29	□□□□□ -1.88
CAF16	YFL028C	YOS1	Q3E834	85 aa		3.29	□□□□□ -1.88
CAF16	YFL028C	HTL1	Q9URQ5	78 aa		3.29	□□□□□ -1.88
CAF16	YFL028C	RPL9A	P05738	191 aa	Known RBP	3.28	□□□□□ -1.88
CAF16	YFL028C	YJR056C	P47115	236 aa		3.28	□□□□□ -1.88
CAF16	YFL028C	RPL9B	P51401	191 aa	Known RBP	3.28	□□□□□ -1.88
CAF16	YFL028C	VPS28	Q02767	242 aa		3.28	□□□□□ -1.88
CAF16	YFL028C	HRD1	Q08109	551 aa		3.28	□□□□□ -1.88
CAF16	YFL028C	YPL257W	Q08974	193 aa		3.28	□□□□□ -1.88
CAF16	YFL028C	FCY1	Q12178	158 aa		3.28	□□□□□ -1.88
CAF16	YFL028C	CKS1	P20486	150 aa	Known RBP	3.27	□□□□□ -1.89
CAF16	YFL028C	MRS4	P23500	304 aa		3.27	□□□□□ -1.89
CAF16	YFL028C	SUA7	P29055	345 aa	Predicted RBP	3.27	□□□□□ -1.89
CAF16	YFL028C	ECM31	P38122	312 aa		3.27	□□□□□ -1.89
CAF16	YFL028C	ERV15	P38312	142 aa		3.27	□□□□□ -1.89
CAF16	YFL028C	YHR138C	P38841	114 aa	Predicted RBP	3.27	□□□□□ -1.89
CAF16	YFL028C	GCN3	P14741	305 aa		3.26	□□□□□ -1.89
CAF16	YFL028C	PHO85	P17157	305 aa		3.26	□□□□□ -1.89
CAF16	YFL028C	YER137C	P40083	148 aa	Known RBP	3.26	□□□□□ -1.89
CAF16	YFL028C	ARP3	P47117	449 aa	Known RBP	3.26	□□□□□ -1.89
CAF16	YFL028C	PDR17	P53844	350 aa		3.26	□□□□□ -1.89
CAF16	YFL028C	RRT7	Q07829	113 aa		3.26	□□□□□ -1.89
CAF16	YFL028C	YOR268C	Q08734	132 aa		3.26	□□□□□ -1.89
CAF16	YFL028C	PRM7	Q12459	698 aa		3.26	□□□□□ -1.89
CAF16	YFL028C	YKR045C	P36138	183 aa		3.25	□□□□□ -1.89

Retrieved 100 of 5,963 RNA–protein pairs in 201 ms