RNA–Protein interactions for RNA: YOR171C

LCB4, Transcript of Sphingoid long-chain base kinase, yeastyeast

Gene LCB4, Length 1,875 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LCB4YOR171C HTD2P38790 280 aaKnown RBP2.55□□□□□ -2
LCB4YOR171C SYS1P41544 203 aa2.55□□□□□ -2
LCB4YOR171C YGR026WP53217 278 aa2.55□□□□□ -2
LCB4YOR171C SMD1Q02260 146 aaPredicted RBP2.55□□□□□ -2
LCB4YOR171C NIP7Q08962 181 aaKnown RBP2.55□□□□□ -2
LCB4YOR171C YHR213W-AQ8TGT4 77 aa2.55□□□□□ -2
LCB4YOR171C MED11Q99278 115 aa2.55□□□□□ -2
LCB4YOR171C TY1B-PR2P0C2J0 1756 aa2.55□□□□□ -2
LCB4YOR171C RAD6P06104 172 aa2.54□□□□□ -2
LCB4YOR171C CPA1P07258 411 aaKnown RBP2.54□□□□□ -2
LCB4YOR171C FMT1P32785 401 aa2.54□□□□□ -2
LCB4YOR171C ZRT3P34240 503 aa2.54□□□□□ -2
LCB4YOR171C PAM17P36147 197 aa2.54□□□□□ -2
LCB4YOR171C CAT8P39113 1433 aa2.54□□□□□ -2
LCB4YOR171C HPA3P39979 161 aa2.54□□□□□ -2
LCB4YOR171C YIL012WP40551 113 aa2.54□□□□□ -2
LCB4YOR171C YFL019CP43576 117 aa2.54□□□□□ -2
LCB4YOR171C YPL067CQ02754 198 aa2.54□□□□□ -2
LCB4YOR171C MMS1Q06211 1407 aa2.54□□□□□ -2
LCB4YOR171C GPI11Q06636 219 aa2.54□□□□□ -2
LCB4YOR171C FEX1Q08913 375 aa2.54□□□□□ -2
LCB4YOR171C PST1Q12355 444 aa2.54□□□□□ -2
LCB4YOR171C DDP1Q99321 188 aaKnown RBP2.54□□□□□ -2
LCB4YOR171C CCH1P50077 2039 aa2.54□□□□□ -2
LCB4YOR171C COX5BP00425 151 aa2.54□□□□□ -2
LCB4YOR171C YPR170W-BP0C5R9 85 aa2.54□□□□□ -2
LCB4YOR171C HMRA1P0CY11 126 aa2.54□□□□□ -2
LCB4YOR171C BET1P22804 142 aa2.54□□□□□ -2
LCB4YOR171C FYV4P38783 130 aaPredicted RBP2.54□□□□□ -2
LCB4YOR171C YER134CP40081 178 aa2.54□□□□□ -2
LCB4YOR171C FIT1Q04433 528 aa2.54□□□□□ -2
LCB4YOR171C FSH2Q05015 223 aa2.54□□□□□ -2
LCB4YOR171C HHF1P02309 103 aaKnown RBP2.53□□□□□ -2
LCB4YOR171C MIX23P38162 196 aa2.53□□□□□ -2
LCB4YOR171C OM14P38325 134 aa2.53□□□□□ -2
LCB4YOR171C PHO89P38361 574 aa2.53□□□□□ -2
LCB4YOR171C EMI1Q04406 187 aa2.53□□□□□ -2
LCB4YOR171C ANT1Q06497 328 aa2.53□□□□□ -2
LCB4YOR171C YPR174CQ06616 221 aaPredicted RBP2.53□□□□□ -2
LCB4YOR171C FIT3Q08907 204 aa2.53□□□□□ -2
LCB4YOR171C YDR029WQ12111 104 aa2.53□□□□□ -2
LCB4YOR171C ATO3Q12359 275 aa2.53□□□□□ -2
LCB4YOR171C YOR020W-AQ3E824 90 aa2.53□□□□□ -2
LCB4YOR171C YCL021W-AQ96VH3 125 aa2.53□□□□□ -2
LCB4YOR171C MSW1P04803 379 aa2.52□□□□□ -2.01
LCB4YOR171C NOP1P15646 327 aaKnown RBP2.52□□□□□ -2.01
LCB4YOR171C ERG2P32352 222 aa2.52□□□□□ -2.01
LCB4YOR171C TMA19P35691 167 aaKnown RBP2.52□□□□□ -2.01
LCB4YOR171C MSA2P36157 363 aa2.52□□□□□ -2.01
LCB4YOR171C YBR013CP38215 129 aa2.52□□□□□ -2.01
LCB4YOR171C DAN1P47178 298 aa2.52□□□□□ -2.01
LCB4YOR171C PGU1P47180 361 aa2.52□□□□□ -2.01
LCB4YOR171C YPL039WQ03080 316 aa2.52□□□□□ -2.01
LCB4YOR171C RSM10Q03201 203 aa2.52□□□□□ -2.01
LCB4YOR171C YMR082CQ04276 118 aa2.52□□□□□ -2.01
LCB4YOR171C YMR090WQ04304 227 aaKnown RBP2.52□□□□□ -2.01
LCB4YOR171C SPG3Q04398 127 aaPredicted RBP2.52□□□□□ -2.01
LCB4YOR171C TIM22Q12328 207 aa2.52□□□□□ -2.01
LCB4YOR171C YAL063C-AQ3E791 96 aa2.52□□□□□ -2.01
LCB4YOR171C YOR376W-AQ3E805 51 aa2.52□□□□□ -2.01
LCB4YOR171C SMC4Q12267 1418 aa2.52□□□□□ -2.01
LCB4YOR171C YFR010W-AP0C5N0 62 aa2.52□□□□□ -2.01
LCB4YOR171C URA5P13298 226 aaKnown RBP2.52□□□□□ -2.01
LCB4YOR171C YCR050CP25630 102 aa2.52□□□□□ -2.01
LCB4YOR171C YCR099CP25657 155 aa2.52□□□□□ -2.01
LCB4YOR171C VTC1P40046 129 aaRIP-Chip data2.52□□□□□ -2.01not detected
LCB4YOR171C YGL262WP53054 175 aa2.52□□□□□ -2.01
LCB4YOR171C YPL264CQ08980 353 aa2.52□□□□□ -2.01
LCB4YOR171C KSH1Q8TGJ3 72 aa2.52□□□□□ -2.01
LCB4YOR171C YLR156WP0CE96 114 aa2.51□□□□□ -2.01
LCB4YOR171C YLR159WP0CE97 114 aa2.51□□□□□ -2.01
LCB4YOR171C YLR161WP0CE98 114 aa2.51□□□□□ -2.01
LCB4YOR171C DDR48P18899 430 aaKnown RBP2.51□□□□□ -2.01
LCB4YOR171C ATP15P21306 62 aa2.51□□□□□ -2.01
LCB4YOR171C VMA11P32842 164 aa2.51□□□□□ -2.01
LCB4YOR171C LSM2P38203 95 aaKnown RBP2.51□□□□□ -2.01
LCB4YOR171C YEL028WP39989 153 aa2.51□□□□□ -2.01
LCB4YOR171C SPO73P40031 143 aa2.51□□□□□ -2.01
LCB4YOR171C NSA2P40078 261 aaKnown RBP2.51□□□□□ -2.01
LCB4YOR171C YER135CP40082 130 aa2.51□□□□□ -2.01
LCB4YOR171C YJL028WP47062 111 aa2.51□□□□□ -2.01
LCB4YOR171C ERG25P53045 309 aa2.51□□□□□ -2.01
LCB4YOR171C YDR102CQ03864 110 aa2.51□□□□□ -2.01
LCB4YOR171C UPS3Q04006 179 aa2.51□□□□□ -2.01
LCB4YOR171C GAL83Q04739 417 aa2.51□□□□□ -2.01
LCB4YOR171C FYV12Q08559 129 aa2.51□□□□□ -2.01
LCB4YOR171C FEX2Q08991 375 aa2.51□□□□□ -2.01
LCB4YOR171C YER078W-AQ3E7A2 54 aa2.51□□□□□ -2.01
LCB4YOR171C XRN1P22147 1528 aaKnown RBP2.51□□□□□ -2.01
LCB4YOR171C ESC1Q03661 1658 aaKnown RBP2.51□□□□□ -2.01
LCB4YOR171C RAS2P01120 322 aaKnown RBP2.5□□□□□ -2.01
LCB4YOR171C YGL010WP25338 174 aa2.5□□□□□ -2.01
LCB4YOR171C TIR3P40552 269 aa2.5□□□□□ -2.01
LCB4YOR171C HRT1Q08273 121 aa2.5□□□□□ -2.01
LCB4YOR171C TY1B-DR1Q03855 1755 aa2.5□□□□□ -2.01
LCB4YOR171C TY1B-DR3Q99231 1755 aa2.5□□□□□ -2.01
LCB4YOR171C GEA1P47102 1408 aaPredicted RBP2.5□□□□□ -2.01
LCB4YOR171C TRP1P00912 224 aa2.5□□□□□ -2.01
LCB4YOR171C SPG1P50088 95 aa2.5□□□□□ -2.01
LCB4YOR171C SYM1Q06563 197 aa2.5□□□□□ -2.01
Retrieved 100 of 5,963 RNA–protein pairs in 27.2 ms