RNA–Protein interactions for RNA: YMR067C

UBX4, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX4, Length 1,251 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX4	YMR067C	HFA1	P32874	2273 aa		0.49	□□□□□ -2.33
UBX4	YMR067C	YBR056W-A	I2HB52	66 aa		0.49	□□□□□ -2.33
UBX4	YMR067C	PEX34	P25584	144 aa		0.49	□□□□□ -2.33
UBX4	YMR067C	RME1	P32338	300 aa	Known RBP	0.49	□□□□□ -2.33
UBX4	YMR067C	SRX1	P36077	127 aa		0.49	□□□□□ -2.33
UBX4	YMR067C	YBR242W	P38331	238 aa		0.49	□□□□□ -2.33
UBX4	YMR067C	ERG10	P41338	398 aa	Known RBP	0.49	□□□□□ -2.33
UBX4	YMR067C	THG1	P53215	237 aa	Known RBP	0.49	□□□□□ -2.33
UBX4	YMR067C	NOP19	P53317	196 aa	Predicted RBP	0.49	□□□□□ -2.33
UBX4	YMR067C	FIT2	Q08906	153 aa		0.49	□□□□□ -2.33
UBX4	YMR067C	MDM32	Q12171	622 aa		0.49	□□□□□ -2.33
UBX4	YMR067C	NCB2	Q92317	146 aa		0.49	□□□□□ -2.33
UBX4	YMR067C	HAP2	P06774	265 aa		0.48	□□□□□ -2.33
UBX4	YMR067C	YPK2	P18961	677 aa		0.48	□□□□□ -2.33
UBX4	YMR067C	CDC39	P25655	2108 aa	Known RBP	0.48	□□□□□ -2.33
UBX4	YMR067C	ARO7	P32178	256 aa		0.48	□□□□□ -2.33
UBX4	YMR067C	SFK1	P35735	353 aa		0.48	□□□□□ -2.33
UBX4	YMR067C	YMR295C	Q03559	197 aa		0.48	□□□□□ -2.33
UBX4	YMR067C	RNH202	Q05635	350 aa		0.48	□□□□□ -2.33
UBX4	YMR067C	YOL024W	Q08172	172 aa		0.48	□□□□□ -2.33
UBX4	YMR067C	MEC1	P38111	2368 aa		0.48	□□□□□ -2.33
UBX4	YMR067C	RAD50	P12753	1312 aa		0.47	□□□□□ -2.33
UBX4	YMR067C	YER134C	P40081	178 aa		0.47	□□□□□ -2.33
UBX4	YMR067C	YIL102C	P40488	101 aa		0.47	□□□□□ -2.33
UBX4	YMR067C	YPR013C	Q12145	317 aa		0.47	□□□□□ -2.33
UBX4	YMR067C	TRA1	P38811	3744 aa		0.47	□□□□□ -2.33
UBX4	YMR067C	BLM10	P43583	2143 aa		0.46	□□□□□ -2.34
UBX4	YMR067C	YAR023C	D6VPM8	179 aa		0.46	□□□□□ -2.34
UBX4	YMR067C	MER1	P16523	270 aa		0.46	□□□□□ -2.34
UBX4	YMR067C	BMH2	P34730	273 aa	Known RBP	0.46	□□□□□ -2.34
UBX4	YMR067C	ERG28	P40030	148 aa		0.46	□□□□□ -2.34
UBX4	YMR067C	SKI6	P46948	246 aa	Predicted RBP	0.46	□□□□□ -2.34
UBX4	YMR067C	COQ1	P18900	473 aa		0.45	□□□□□ -2.34
UBX4	YMR067C	MAK31	P23059	88 aa		0.45	□□□□□ -2.34
UBX4	YMR067C	CNB1	P25296	175 aa		0.45	□□□□□ -2.34
UBX4	YMR067C	AHT1	P29589	182 aa		0.45	□□□□□ -2.34
UBX4	YMR067C	AIM2	P39721	246 aa		0.45	□□□□□ -2.34
UBX4	YMR067C	OTU1	P43558	301 aa		0.45	□□□□□ -2.34
UBX4	YMR067C	CWC21	Q03375	135 aa	Known RBP	0.45	□□□□□ -2.34
UBX4	YMR067C	SHH3	Q04487	196 aa		0.45	□□□□□ -2.34
UBX4	YMR067C	URA2	P07259	2214 aa	Known RBP	0.45	□□□□□ -2.34
UBX4	YMR067C	SEN2	P16658	377 aa		0.44	□□□□□ -2.34
UBX4	YMR067C	TAF14	P35189	244 aa		0.44	□□□□□ -2.34
UBX4	YMR067C	YHL037C	P38733	133 aa		0.44	□□□□□ -2.34
UBX4	YMR067C	MET31	Q03081	177 aa		0.44	□□□□□ -2.34
UBX4	YMR067C	FUS2	Q05670	677 aa		0.44	□□□□□ -2.34
UBX4	YMR067C	GGA1	Q06336	557 aa		0.44	□□□□□ -2.34
UBX4	YMR067C	CCW12	Q12127	133 aa		0.44	□□□□□ -2.34
UBX4	YMR067C	BPH1	P25356	2167 aa		0.43	□□□□□ -2.34
UBX4	YMR067C	GSP2	P32836	220 aa	Known RBP	0.43	□□□□□ -2.34
UBX4	YMR067C	YCR087C-A	P37263	153 aa		0.43	□□□□□ -2.34
UBX4	YMR067C	MAK5	P38112	773 aa	Predicted RBP	0.43	□□□□□ -2.34
UBX4	YMR067C	MTW1	P39731	289 aa		0.43	□□□□□ -2.34
UBX4	YMR067C	YNL194C	P40169	301 aa		0.43	□□□□□ -2.34
UBX4	YMR067C	PHB1	P40961	287 aa		0.43	□□□□□ -2.34
UBX4	YMR067C	SER2	P42941	309 aa		0.43	□□□□□ -2.34
UBX4	YMR067C	SMD2	Q06217	110 aa	Known RBP	0.43	□□□□□ -2.34
UBX4	YMR067C	ATG10	Q07879	167 aa		0.43	□□□□□ -2.34
UBX4	YMR067C	FYV12	Q08559	129 aa		0.43	□□□□□ -2.34
UBX4	YMR067C	ABP140	Q08641	628 aa	Known RBP	0.43	□□□□□ -2.34
UBX4	YMR067C	YOR342C	Q12182	319 aa		0.43	□□□□□ -2.34
UBX4	YMR067C	NHP6B	P11633	99 aa	Known RBP	0.42	□□□□□ -2.34
UBX4	YMR067C	STE18	P18852	110 aa		0.42	□□□□□ -2.34
UBX4	YMR067C	EMC4	P53073	190 aa		0.42	□□□□□ -2.34
UBX4	YMR067C	PGA2	P53903	129 aa		0.42	□□□□□ -2.34
UBX4	YMR067C	DYN1	P36022	4092 aa		0.42	□□□□□ -2.34
UBX4	YMR067C	YDR157W	A0A023PZE8	133 aa		0.41	□□□□□ -2.34
UBX4	YMR067C	CCW14	O13547	238 aa		0.41	□□□□□ -2.34
UBX4	YMR067C	UBC6	P33296	250 aa	Predicted RBP	0.41	□□□□□ -2.34
UBX4	YMR067C	YKL102C	P34249	101 aa		0.41	□□□□□ -2.34
UBX4	YMR067C	YIL086C	P40503	102 aa		0.41	□□□□□ -2.34
UBX4	YMR067C	ARP3	P47117	449 aa	Known RBP	0.41	□□□□□ -2.34
UBX4	YMR067C	CWC23	P52868	283 aa	Predicted RBP	0.41	□□□□□ -2.34
UBX4	YMR067C	YNL033W	P53964	284 aa		0.41	□□□□□ -2.34
UBX4	YMR067C	YMR099C	Q03161	297 aa	Known RBP	0.41	□□□□□ -2.34
UBX4	YMR067C	PIR1	Q03178	341 aa		0.41	□□□□□ -2.34
UBX4	YMR067C	RNH1	Q04740	348 aa		0.41	□□□□□ -2.34
UBX4	YMR067C	YPR114W	Q06107	315 aa		0.41	□□□□□ -2.34
UBX4	YMR067C	GET4	Q12125	312 aa		0.41	□□□□□ -2.34
UBX4	YMR067C	YLR046C	Q12253	270 aa		0.41	□□□□□ -2.34
UBX4	YMR067C	PEX11	Q12462	236 aa		0.41	□□□□□ -2.34
UBX4	YMR067C	TAR1	Q8TGM6	124 aa		0.41	□□□□□ -2.34
UBX4	YMR067C	Q0297	Q9ZZV8	51 aa		0.41	□□□□□ -2.34
UBX4	YMR067C	MDN1	Q12019	4910 aa	Known RBP	0.4	□□□□□ -2.35
UBX4	YMR067C	SPS18	P32572	300 aa		0.4	□□□□□ -2.35
UBX4	YMR067C	PRP18	P33411	251 aa	Predicted RBP	0.4	□□□□□ -2.35
UBX4	YMR067C	PAM17	P36147	197 aa		0.4	□□□□□ -2.35
UBX4	YMR067C	YAR064W	P39563	99 aa		0.4	□□□□□ -2.35
UBX4	YMR067C	CUP9	P41817	306 aa		0.4	□□□□□ -2.35
UBX4	YMR067C	YFL051C	P43552	160 aa		0.4	□□□□□ -2.35
UBX4	YMR067C	DCV1	P43595	202 aa		0.4	□□□□□ -2.35
UBX4	YMR067C	RAD17	P48581	401 aa		0.4	□□□□□ -2.35
UBX4	YMR067C	VPS71	Q03433	280 aa		0.4	□□□□□ -2.35
UBX4	YMR067C	GRX8	Q05926	109 aa		0.4	□□□□□ -2.35
UBX4	YMR067C	GIS3	Q12418	502 aa		0.4	□□□□□ -2.35
UBX4	YMR067C	JIP3	O13555	125 aa		0.39	□□□□□ -2.35
UBX4	YMR067C	MBF1	O14467	151 aa	Known RBP	0.39	□□□□□ -2.35
UBX4	YMR067C	SNF4	P12904	322 aa		0.39	□□□□□ -2.35
UBX4	YMR067C	RPS27A	P35997	82 aa	Known RBP	0.39	□□□□□ -2.35
UBX4	YMR067C	CBT1	P36038	271 aa	Predicted RBP	0.39	□□□□□ -2.35

Retrieved 100 of 5,963 RNA–protein pairs in 79.2 ms