RNA–Protein interactions for RNA: YHR088W

RPF1, Transcript of Protein involved in assembly and export of the large ribosomal subunit, yeastyeast

Gene RPF1, Length 888 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPF1YHR088W YLR307C-AQ3E825 87 aa-0.01□□□□□ -2.41
RPF1YHR088W TAF2P23255 1407 aa-0.02□□□□□ -2.41
RPF1YHR088W RAD9P14737 1309 aa-0.02□□□□□ -2.41
RPF1YHR088W HAP2P06774 265 aa-0.02□□□□□ -2.41
RPF1YHR088W RPS22AP0C0W1 130 aaKnown RBP-0.02□□□□□ -2.41
RPF1YHR088W YEL073CP39974 107 aa-0.02□□□□□ -2.41
RPF1YHR088W MGR2Q02889 113 aa-0.02□□□□□ -2.41
RPF1YHR088W SEN15Q04675 128 aa-0.02□□□□□ -2.41
RPF1YHR088W BRX1Q08235 291 aaKnown RBP-0.02□□□□□ -2.41
RPF1YHR088W VAM10Q08474 114 aa-0.02□□□□□ -2.41
RPF1YHR088W YOR214CQ12282 236 aa-0.02□□□□□ -2.41
RPF1YHR088W RPS22BQ3E7Y3 130 aaKnown RBP-0.02□□□□□ -2.41
RPF1YHR088W NOC4Q06512 552 aaPredicted RBP-0.03□□□□□ -2.41
RPF1YHR088W SPS2P08459 502 aa-0.04□□□□□ -2.42
RPF1YHR088W YLR157W-EP0CF00 54 aa-0.04□□□□□ -2.42
RPF1YHR088W RPB4P20433 221 aaPredicted RBP-0.04□□□□□ -2.42
RPF1YHR088W AHC2P25649 128 aa-0.04□□□□□ -2.42
RPF1YHR088W YBR027CP38220 110 aa-0.04□□□□□ -2.42
RPF1YHR088W RFC2P40348 353 aa-0.04□□□□□ -2.42
RPF1YHR088W YNL122CP53921 115 aaPredicted RBP-0.04□□□□□ -2.42
RPF1YHR088W GRX8Q05926 109 aa-0.04□□□□□ -2.42
RPF1YHR088W JIP3O13555 125 aa-0.05□□□□□ -2.42
RPF1YHR088W APA2P22108 325 aa-0.05□□□□□ -2.42
RPF1YHR088W YKT6P36015 200 aaKnown RBP-0.05□□□□□ -2.42
RPF1YHR088W SOL1P50278 321 aa-0.05□□□□□ -2.42
RPF1YHR088W GEP7P53171 287 aa-0.05□□□□□ -2.42
RPF1YHR088W SHH4Q06236 168 aa-0.05□□□□□ -2.42
RPF1YHR088W SPT14P32363 452 aa-0.06□□□□□ -2.42
RPF1YHR088W YKL102CP34249 101 aa-0.06□□□□□ -2.42
RPF1YHR088W CAF4P36130 643 aa-0.06□□□□□ -2.42
RPF1YHR088W ATG8P38182 117 aaRIP-Chip data-0.06□□□□□ -2.42not detected
RPF1YHR088W YHR140WP38842 239 aa-0.06□□□□□ -2.42
RPF1YHR088W TIM11P81449 96 aaPredicted RBP-0.06□□□□□ -2.42
RPF1YHR088W HRD1Q08109 551 aa-0.06□□□□□ -2.42
RPF1YHR088W NUF2P33895 451 aa-0.07□□□□□ -2.42
RPF1YHR088W TTI2P47168 421 aa-0.07□□□□□ -2.42
RPF1YHR088W HOP2P53187 214 aa-0.07□□□□□ -2.42
RPF1YHR088W HPT1Q04178 221 aaKnown RBP-0.07□□□□□ -2.42
RPF1YHR088W YBR056W-AI2HB52 66 aa-0.08□□□□□ -2.42
RPF1YHR088W RAD6P06104 172 aa-0.08□□□□□ -2.42
RPF1YHR088W INO4P13902 151 aa-0.08□□□□□ -2.42
RPF1YHR088W YKR041WP36134 250 aa-0.08□□□□□ -2.42
RPF1YHR088W GLR1P41921 483 aaKnown RBP-0.08□□□□□ -2.42
RPF1YHR088W TIM13P53299 105 aa-0.08□□□□□ -2.42
RPF1YHR088W SNO1Q03144 224 aa-0.08□□□□□ -2.42
RPF1YHR088W GRE1Q08969 168 aa-0.08□□□□□ -2.42
RPF1YHR088W RIB3Q99258 208 aa-0.08□□□□□ -2.42
RPF1YHR088W CSH1P38287 376 aa-0.09□□□□□ -2.42
RPF1YHR088W YEL028WP39989 153 aa-0.09□□□□□ -2.42
RPF1YHR088W XPT1P47165 209 aa-0.09□□□□□ -2.42
RPF1YHR088W YDL241WQ07738 123 aa-0.09□□□□□ -2.42
RPF1YHR088W CMC4Q3E7A9 73 aa-0.09□□□□□ -2.42
RPF1YHR088W TRM3Q07527 1436 aa-0.1□□□□□ -2.43
RPF1YHR088W HSP150P32478 413 aa-0.1□□□□□ -2.43
RPF1YHR088W UBC6P33296 250 aaPredicted RBP-0.1□□□□□ -2.43
RPF1YHR088W SYM1Q06563 197 aa-0.1□□□□□ -2.43
RPF1YHR088W ECM31P38122 312 aa-0.11□□□□□ -2.43
RPF1YHR088W SHG1P38337 142 aa-0.11□□□□□ -2.43
RPF1YHR088W NVJ1P38881 321 aa-0.11□□□□□ -2.43
RPF1YHR088W YEL014CP39999 101 aa-0.11□□□□□ -2.43
RPF1YHR088W CGR1P53188 120 aa-0.11□□□□□ -2.43
RPF1YHR088W LIP1Q03579 150 aa-0.11□□□□□ -2.43
RPF1YHR088W HYP2P23301 157 aaKnown RBP-0.12□□□□□ -2.43
RPF1YHR088W ATG10Q07879 167 aa-0.12□□□□□ -2.43
RPF1YHR088W UIP4Q08926 304 aa-0.13□□□□□ -2.43
RPF1YHR088W PEX11Q12462 236 aa-0.13□□□□□ -2.43
RPF1YHR088W MVB12P42939 101 aa-0.14□□□□□ -2.43
RPF1YHR088W HTD2P38790 280 aaKnown RBP-0.15□□□□□ -2.43
RPF1YHR088W IPT1P38954 527 aa-0.15□□□□□ -2.43
RPF1YHR088W YPR114WQ06107 315 aa-0.15□□□□□ -2.43
RPF1YHR088W HSL1P34244 1518 aa-0.15□□□□□ -2.43
RPF1YHR088W SRP102P36057 244 aaPredicted RBP-0.16□□□□□ -2.44
RPF1YHR088W YPT31P38555 223 aaKnown RBP-0.16□□□□□ -2.44
RPF1YHR088W JAC1P53193 184 aa-0.16□□□□□ -2.44
RPF1YHR088W THI74Q04083 370 aa-0.16□□□□□ -2.44
RPF1YHR088W YET3Q07451 203 aa-0.16□□□□□ -2.44
RPF1YHR088W YOR034C-AQ3E735 80 aa-0.16□□□□□ -2.44
RPF1YHR088W ADE6P38972 1358 aaKnown RBP-0.17□□□□□ -2.44
RPF1YHR088W CWC21Q03375 135 aaKnown RBP-0.17□□□□□ -2.44
RPF1YHR088W FMN1Q03778 218 aa-0.17□□□□□ -2.44
RPF1YHR088W YMR321CQ04898 105 aa-0.17□□□□□ -2.44
RPF1YHR088W YLR046CQ12253 270 aa-0.17□□□□□ -2.44
RPF1YHR088W SPA2P23201 1466 aaKnown RBP-0.17□□□□□ -2.44
RPF1YHR088W RPL33AP05744 107 aaKnown RBP-0.18□□□□□ -2.44
RPF1YHR088W PHO13P19881 312 aa-0.19□□□□□ -2.44
RPF1YHR088W SRP14P38985 146 aa-0.19□□□□□ -2.44
RPF1YHR088W YJL009WP47078 108 aa-0.19□□□□□ -2.44
RPF1YHR088W YIP3P53633 176 aa-0.19□□□□□ -2.44
RPF1YHR088W YNR064CP53750 290 aa-0.19□□□□□ -2.44
RPF1YHR088W IRC21Q04772 201 aa-0.19□□□□□ -2.44
RPF1YHR088W NMA1Q06178 401 aaKnown RBP-0.19□□□□□ -2.44
RPF1YHR088W MRS4P23500 304 aa-0.2□□□□□ -2.44
RPF1YHR088W TRR1P29509 319 aaKnown RBP-0.2□□□□□ -2.44
RPF1YHR088W ATP7P30902 174 aa-0.2□□□□□ -2.44
RPF1YHR088W YGL193CP53097 103 aa-0.2□□□□□ -2.44
RPF1YHR088W HSK3P69852 69 aa-0.2□□□□□ -2.44
RPF1YHR088W YGL041W-AP0C5N3 154 aa-0.21□□□□□ -2.44
RPF1YHR088W SEC72P39742 193 aaKnown RBP-0.21□□□□□ -2.44
RPF1YHR088W RCF2P53721 224 aa-0.21□□□□□ -2.44
RPF1YHR088W YDR102CQ03864 110 aa-0.21□□□□□ -2.44
Retrieved 100 of 5,963 RNA–protein pairs in 30.4 ms