RNA–Protein interactions for RNA: YGR003W

CUL3, Transcript of Ubiquitin-protein ligase, yeastyeast

Gene CUL3, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CUL3YGR003W YDC1Q02896 317 aa0.12□□□□□ -2.39
CUL3YGR003W YDL085C-AQ3E7B7 68 aaKnown RBP0.12□□□□□ -2.39
CUL3YGR003W APS3P47064 194 aa0.11□□□□□ -2.39
CUL3YGR003W TMA23Q03525 211 aa0.11□□□□□ -2.39
CUL3YGR003W FCY1Q12178 158 aa0.11□□□□□ -2.39
CUL3YGR003W YEL028WP39989 153 aa0.11□□□□□ -2.39
CUL3YGR003W YOR214CQ12282 236 aa0.11□□□□□ -2.39
CUL3YGR003W YRA2P36036 203 aaKnown RBP RIP-Chip data0.1□□□□□ -2.39not detected
CUL3YGR003W FMP32P43557 207 aa0.1□□□□□ -2.39
CUL3YGR003W JAC1P53193 184 aa0.1□□□□□ -2.39
CUL3YGR003W VPS28Q02767 242 aa0.1□□□□□ -2.39
CUL3YGR003W CAF4P36130 643 aa0.1□□□□□ -2.39
CUL3YGR003W YEL073CP39974 107 aa0.1□□□□□ -2.39
CUL3YGR003W GLC8P41818 229 aa0.1□□□□□ -2.39
CUL3YGR003W PAC10P48363 199 aa0.1□□□□□ -2.39
CUL3YGR003W SED1Q01589 338 aa0.1□□□□□ -2.39
CUL3YGR003W KIN28P06242 306 aa0.09□□□□□ -2.39
CUL3YGR003W INO4P13902 151 aa0.09□□□□□ -2.39
CUL3YGR003W ATG8P38182 117 aaRIP-Chip data0.09□□□□□ -2.39not detected
CUL3YGR003W TAF2P23255 1407 aa0.09□□□□□ -2.4
CUL3YGR003W SHG1P38337 142 aa0.09□□□□□ -2.4
CUL3YGR003W YGR269WP40326 108 aa0.09□□□□□ -2.4
CUL3YGR003W CGR1P53188 120 aa0.09□□□□□ -2.4
CUL3YGR003W HHT1P61830 136 aa0.09□□□□□ -2.4
CUL3YGR003W YDL157CQ12082 118 aa0.09□□□□□ -2.4
CUL3YGR003W RIB3Q99258 208 aa0.09□□□□□ -2.4
CUL3YGR003W HSP150P32478 413 aa0.08□□□□□ -2.4
CUL3YGR003W DIE2P50076 525 aa0.08□□□□□ -2.4
CUL3YGR003W CWC21Q03375 135 aaKnown RBP0.08□□□□□ -2.4
CUL3YGR003W ROM2P51862 1356 aaKnown RBP0.08□□□□□ -2.4
CUL3YGR003W RAD6P06104 172 aa0.07□□□□□ -2.4
CUL3YGR003W MRS4P23500 304 aa0.07□□□□□ -2.4
CUL3YGR003W YBR027CP38220 110 aa0.07□□□□□ -2.4
CUL3YGR003W MOB1P40484 314 aa0.07□□□□□ -2.4
CUL3YGR003W HSK3P69852 69 aa0.07□□□□□ -2.4
CUL3YGR003W SYM1Q06563 197 aa0.07□□□□□ -2.4
CUL3YGR003W SPT14P32363 452 aa0.07□□□□□ -2.4
CUL3YGR003W YIP3P53633 176 aa0.07□□□□□ -2.4
CUL3YGR003W YDR102CQ03864 110 aa0.07□□□□□ -2.4
CUL3YGR003W THI74Q04083 370 aa0.07□□□□□ -2.4
CUL3YGR003W HPT1Q04178 221 aaKnown RBP0.07□□□□□ -2.4
CUL3YGR003W SEN15Q04675 128 aa0.07□□□□□ -2.4
CUL3YGR003W SNF2P22082 1703 aa0.07□□□□□ -2.4
CUL3YGR003W BNI1P41832 1953 aa0.07□□□□□ -2.4
CUL3YGR003W GSC2P40989 1895 aa0.07□□□□□ -2.4
CUL3YGR003W BRR2P32639 2163 aaKnown RBP0.06□□□□□ -2.4
CUL3YGR003W SPS2P08459 502 aa0.06□□□□□ -2.4
CUL3YGR003W RPL35AP0CX84 120 aaKnown RBP0.06□□□□□ -2.4
CUL3YGR003W RPL35BP0CX85 120 aaKnown RBP0.06□□□□□ -2.4
CUL3YGR003W CCC1P47818 322 aa0.06□□□□□ -2.4
CUL3YGR003W NQM1P53228 333 aaPredicted RBP0.06□□□□□ -2.4
CUL3YGR003W YML079WQ03629 201 aa0.06□□□□□ -2.4
CUL3YGR003W YPR114WQ06107 315 aa0.06□□□□□ -2.4
CUL3YGR003W VAM10Q08474 114 aa0.06□□□□□ -2.4
CUL3YGR003W YHR213W-BQ8TGK1 99 aa0.06□□□□□ -2.4
CUL3YGR003W TRM3Q07527 1436 aa0.06□□□□□ -2.4
CUL3YGR003W UBR1P19812 1950 aa0.06□□□□□ -2.4
CUL3YGR003W POL2P21951 2222 aaKnown RBP0.06□□□□□ -2.4
CUL3YGR003W RPS25BP0C0T4 108 aaKnown RBP0.06□□□□□ -2.4
CUL3YGR003W YEL014CP39999 101 aa0.06□□□□□ -2.4
CUL3YGR003W LIP1Q03579 150 aa0.06□□□□□ -2.4
CUL3YGR003W HRD1Q08109 551 aa0.06□□□□□ -2.4
CUL3YGR003W RPS25AQ3E792 108 aaPredicted RBP0.06□□□□□ -2.4
CUL3YGR003W PRE1P22141 198 aaKnown RBP0.05□□□□□ -2.4
CUL3YGR003W UBC6P33296 250 aaPredicted RBP0.05□□□□□ -2.4
CUL3YGR003W YPT31P38555 223 aaKnown RBP0.05□□□□□ -2.4
CUL3YGR003W CIN5P40917 295 aa0.05□□□□□ -2.4
CUL3YGR003W HOP2P53187 214 aa0.05□□□□□ -2.4
CUL3YGR003W ORM1P53224 222 aa0.05□□□□□ -2.4
CUL3YGR003W YNL122CP53921 115 aaPredicted RBP0.05□□□□□ -2.4
CUL3YGR003W PEX11Q12462 236 aa0.05□□□□□ -2.4
CUL3YGR003W PTC1P35182 281 aa0.05□□□□□ -2.4
CUL3YGR003W ATP7P30902 174 aa0.04□□□□□ -2.4
CUL3YGR003W TIM13P53299 105 aa0.04□□□□□ -2.4
CUL3YGR003W MGR2Q02889 113 aa0.04□□□□□ -2.4
CUL3YGR003W ATG10Q07879 167 aa0.04□□□□□ -2.4
CUL3YGR003W YLR307C-AQ3E825 87 aa0.04□□□□□ -2.4
CUL3YGR003W HSL1P34244 1518 aa0.04□□□□□ -2.4
CUL3YGR003W RAD51P25454 400 aa0.03□□□□□ -2.4
CUL3YGR003W TRR1P29509 319 aaKnown RBP0.03□□□□□ -2.4
CUL3YGR003W IPT1P38954 527 aa0.03□□□□□ -2.4
CUL3YGR003W YER121WP40076 114 aa0.03□□□□□ -2.4
CUL3YGR003W GEP7P53171 287 aa0.03□□□□□ -2.4
CUL3YGR003W YNL140CP53910 189 aa0.03□□□□□ -2.4
CUL3YGR003W YLR157W-EP0CF00 54 aa0.03□□□□□ -2.4
CUL3YGR003W UBI4P0CG63 381 aaKnown RBP0.03□□□□□ -2.4
CUL3YGR003W RPL43AP0CX25 92 aaKnown RBP0.03□□□□□ -2.4
CUL3YGR003W RPL43BP0CX26 92 aa0.03□□□□□ -2.4
CUL3YGR003W NUF2P33895 451 aa0.03□□□□□ -2.4
CUL3YGR003W SEC16P48415 2195 aaKnown RBP0.02□□□□□ -2.41
CUL3YGR003W SRP21P32342 167 aa0.02□□□□□ -2.41
CUL3YGR003W FES1P38260 290 aa0.02□□□□□ -2.41
CUL3YGR003W YNR064CP53750 290 aa0.02□□□□□ -2.41
CUL3YGR003W GRX5Q02784 150 aa0.02□□□□□ -2.41
CUL3YGR003W UIP4Q08926 304 aa0.02□□□□□ -2.41
CUL3YGR003W PRM3Q08931 133 aa0.02□□□□□ -2.41
CUL3YGR003W COX5BP00425 151 aa0.02□□□□□ -2.41
CUL3YGR003W AIM4P38305 123 aaPredicted RBP0.02□□□□□ -2.41
CUL3YGR003W YMR141CP40211 102 aa0.02□□□□□ -2.41
CUL3YGR003W FIP1P45976 327 aa0.02□□□□□ -2.41
Retrieved 100 of 5,963 RNA–protein pairs in 100 ms