RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	SNC2	P33328	115 aa		3.44	□□□□□ -1.86
CAF16	YFL028C	YKL075C	P36083	450 aa		3.44	□□□□□ -1.86
CAF16	YFL028C	YNL194C	P40169	301 aa		3.44	□□□□□ -1.86
CAF16	YFL028C	YGL034C	P53186	121 aa		3.44	□□□□□ -1.86
CAF16	YFL028C	ERV29	P53337	310 aa		3.44	□□□□□ -1.86
CAF16	YFL028C	YKR005C	Q02203	525 aa		3.44	□□□□□ -1.86
CAF16	YFL028C	PRR2	Q12310	699 aa		3.44	□□□□□ -1.86
CAF16	YFL028C	HUT1	Q12520	339 aa		3.44	□□□□□ -1.86
CAF16	YFL028C	Q0297	Q9ZZV8	51 aa		3.44	□□□□□ -1.86
CAF16	YFL028C	NTF2	P33331	125 aa	Known RBP	3.43	□□□□□ -1.86
CAF16	YFL028C	HTD2	P38790	280 aa	Known RBP	3.43	□□□□□ -1.86
CAF16	YFL028C	SUR2	P38992	349 aa		3.43	□□□□□ -1.86
CAF16	YFL028C	FCY21	P40039	528 aa		3.43	□□□□□ -1.86
CAF16	YFL028C	GPI14	P47088	403 aa	Known RBP	3.43	□□□□□ -1.86
CAF16	YFL028C	ALG9	P53868	555 aa	Known RBP	3.43	□□□□□ -1.86
CAF16	YFL028C	YLR179C	Q06252	201 aa	Known RBP	3.43	□□□□□ -1.86
CAF16	YFL028C	CDC28	P00546	298 aa	Known RBP	3.42	□□□□□ -1.86
CAF16	YFL028C	REP2	P03872	296 aa		3.42	□□□□□ -1.86
CAF16	YFL028C	RPL39	P04650	51 aa		3.42	□□□□□ -1.86
CAF16	YFL028C	YCL042W	P25572	119 aa		3.42	□□□□□ -1.86
CAF16	YFL028C	UMP1	P38293	148 aa		3.42	□□□□□ -1.86
CAF16	YFL028C	IPI1	P38803	334 aa	Predicted RBP	3.42	□□□□□ -1.86
CAF16	YFL028C	YER121W	P40076	114 aa		3.42	□□□□□ -1.86
CAF16	YFL028C	YIR035C	P40579	254 aa		3.42	□□□□□ -1.86
CAF16	YFL028C	GLR1	P41921	483 aa	Known RBP	3.42	□□□□□ -1.86
CAF16	YFL028C	SER2	P42941	309 aa		3.42	□□□□□ -1.86
CAF16	YFL028C	YFR045W	P43617	309 aa		3.42	□□□□□ -1.86
CAF16	YFL028C	BXI1	P48558	297 aa		3.42	□□□□□ -1.86
CAF16	YFL028C	YNL046W	P53956	172 aa		3.42	□□□□□ -1.86
CAF16	YFL028C	YDR248C	Q03786	193 aa		3.42	□□□□□ -1.86
CAF16	YFL028C	YDR114C	Q04597	100 aa		3.42	□□□□□ -1.86
CAF16	YFL028C	KEI1	Q06346	221 aa		3.42	□□□□□ -1.86
CAF16	YFL028C	YOR283W	Q12040	230 aa	Known RBP	3.42	□□□□□ -1.86
CAF16	YFL028C	TIM22	Q12328	207 aa		3.42	□□□□□ -1.86
CAF16	YFL028C	MPD1	Q12404	318 aa	Known RBP	3.42	□□□□□ -1.86
CAF16	YFL028C	ISD11	Q6Q560	94 aa		3.42	□□□□□ -1.86
CAF16	YFL028C	DYN1	P36022	4092 aa		3.41	□□□□□ -1.86
CAF16	YFL028C	UTP20	P35194	2493 aa	Known RBP	3.41	□□□□□ -1.86
CAF16	YFL028C	PEX4	P29340	183 aa		3.41	□□□□□ -1.86
CAF16	YFL028C	SPT14	P32363	452 aa		3.41	□□□□□ -1.86
CAF16	YFL028C	AGA2	P32781	87 aa		3.41	□□□□□ -1.86
CAF16	YFL028C	YBL010C	P32788	280 aa		3.41	□□□□□ -1.86
CAF16	YFL028C	CTR2	P38865	189 aa		3.41	□□□□□ -1.86
CAF16	YFL028C	RMD6	P39975	231 aa		3.41	□□□□□ -1.86
CAF16	YFL028C	YIL059C	P40520	121 aa		3.41	□□□□□ -1.86
CAF16	YFL028C	GON7	P46984	123 aa		3.41	□□□□□ -1.86
CAF16	YFL028C	IRC18	P47056	224 aa		3.41	□□□□□ -1.86
CAF16	YFL028C	SBH2	P52871	88 aa		3.41	□□□□□ -1.86
CAF16	YFL028C	ALG13	P53178	202 aa		3.41	□□□□□ -1.86
CAF16	YFL028C	YGR042W	P53227	271 aa		3.41	□□□□□ -1.86
CAF16	YFL028C	YOR186W	Q08560	144 aa		3.41	□□□□□ -1.86
CAF16	YFL028C	ODC2	Q99297	307 aa		3.41	□□□□□ -1.86
CAF16	YFL028C	RPL28	P02406	149 aa	Known RBP	3.4	□□□□□ -1.87
CAF16	YFL028C	FIG1	P38224	298 aa		3.4	□□□□□ -1.87
CAF16	YFL028C	HPA3	P39979	161 aa		3.4	□□□□□ -1.87
CAF16	YFL028C	LSM4	P40070	187 aa	Known RBP	3.4	□□□□□ -1.87
CAF16	YFL028C	CAT5	P41735	233 aa		3.4	□□□□□ -1.87
CAF16	YFL028C	MIC26	P50087	233 aa		3.4	□□□□□ -1.87
CAF16	YFL028C	MRPS17	Q03246	237 aa	Predicted RBP	3.4	□□□□□ -1.87
CAF16	YFL028C	HNT1	Q04344	158 aa	Known RBP	3.4	□□□□□ -1.87
CAF16	YFL028C	YPR063C	Q12160	140 aa		3.4	□□□□□ -1.87
CAF16	YFL028C	RTR2	Q12378	196 aa		3.4	□□□□□ -1.87
CAF16	YFL028C	YCL048W-A	Q2V2Q2	79 aa		3.4	□□□□□ -1.87
CAF16	YFL028C	RPL25	P04456	142 aa	Known RBP	3.39	□□□□□ -1.87
CAF16	YFL028C	URA6	P15700	204 aa		3.39	□□□□□ -1.87
CAF16	YFL028C	RFA3	P26755	122 aa	Known RBP	3.39	□□□□□ -1.87
CAF16	YFL028C	TEM1	P38987	245 aa		3.39	□□□□□ -1.87
CAF16	YFL028C	YIR020C	P40575	100 aa		3.39	□□□□□ -1.87
CAF16	YFL028C	GNA1	P43577	159 aa	Predicted RBP	3.39	□□□□□ -1.87
CAF16	YFL028C	OST3	P48439	350 aa		3.39	□□□□□ -1.87
CAF16	YFL028C	YPL067C	Q02754	198 aa		3.39	□□□□□ -1.87
CAF16	YFL028C	GEP5	Q12393	293 aa		3.39	□□□□□ -1.87
CAF16	YFL028C	YDR157W	A0A023PZE8	133 aa		3.38	□□□□□ -1.87
CAF16	YFL028C	PET54	P10834	293 aa		3.38	□□□□□ -1.87
CAF16	YFL028C	YCR101C	P25607	182 aa		3.38	□□□□□ -1.87
CAF16	YFL028C	OCH1	P31755	480 aa		3.38	□□□□□ -1.87
CAF16	YFL028C	RNP1	P32385	249 aa		3.38	□□□□□ -1.87
CAF16	YFL028C	FMT1	P32785	401 aa		3.38	□□□□□ -1.87
CAF16	YFL028C	CCS1	P40202	249 aa	Known RBP	3.38	□□□□□ -1.87
CAF16	YFL028C	GEP7	P53171	287 aa		3.38	□□□□□ -1.87
CAF16	YFL028C	LSM7	P53905	115 aa	Known RBP	3.38	□□□□□ -1.87
CAF16	YFL028C	PRM15	Q03262	622 aa		3.38	□□□□□ -1.87
CAF16	YFL028C	UPS1	Q05776	175 aa		3.38	□□□□□ -1.87
CAF16	YFL028C	YLR031W	Q07978	186 aa		3.38	□□□□□ -1.87
CAF16	YFL028C	SMT3	Q12306	101 aa	Known RBP	3.38	□□□□□ -1.87
CAF16	YFL028C	DCN1	Q12395	269 aa		3.38	□□□□□ -1.87
CAF16	YFL028C	YMR105W-A	Q8TGS8	64 aa		3.38	□□□□□ -1.87
CAF16	YFL028C	APA2	P22108	325 aa		3.37	□□□□□ -1.87
CAF16	YFL028C	SEC22	P22214	214 aa		3.37	□□□□□ -1.87
CAF16	YFL028C	HYM1	P32464	399 aa		3.37	□□□□□ -1.87
CAF16	YFL028C	PIR5	P46999	287 aa		3.37	□□□□□ -1.87
CAF16	YFL028C	XPT1	P47165	209 aa		3.37	□□□□□ -1.87
CAF16	YFL028C	MCM22	P47167	239 aa		3.37	□□□□□ -1.87
CAF16	YFL028C	DIE2	P50076	525 aa		3.37	□□□□□ -1.87
CAF16	YFL028C	YNR064C	P53750	290 aa		3.37	□□□□□ -1.87
CAF16	YFL028C	GIM3	P53900	129 aa		3.37	□□□□□ -1.87
CAF16	YFL028C	FYV6	P53913	173 aa		3.37	□□□□□ -1.87
CAF16	YFL028C	CSI2	Q08054	341 aa		3.37	□□□□□ -1.87
CAF16	YFL028C	MSA1	Q08471	629 aa		3.37	□□□□□ -1.87
CAF16	YFL028C	YOR192C-C	Q3E736	78 aa		3.37	□□□□□ -1.87

Retrieved 100 of 5,963 RNA–protein pairs in 59.3 ms