RNA–Protein interactions for RNA: YBR170C

NPL4, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeast

Gene NPL4, Length 1,743 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NPL4	YBR170C	YDR366C	P87287	132 aa		2.72	□□□□□ -1.97
NPL4	YBR170C	YOR015W	Q12169	119 aa		2.72	□□□□□ -1.97
NPL4	YBR170C	RGM1	Q00453	211 aa		2.71	□□□□□ -1.98
NPL4	YBR170C	LIP1	Q03579	150 aa		2.71	□□□□□ -1.98
NPL4	YBR170C	YPR174C	Q06616	221 aa	Predicted RBP	2.71	□□□□□ -1.98
NPL4	YBR170C	PRP11	Q07350	266 aa	Predicted RBP	2.71	□□□□□ -1.98
NPL4	YBR170C	THG1	P53215	237 aa	Known RBP	2.71	□□□□□ -1.98
NPL4	YBR170C	DAD4	P69851	72 aa		2.71	□□□□□ -1.98
NPL4	YBR170C	UBC7	Q02159	165 aa		2.71	□□□□□ -1.98
NPL4	YBR170C	GRX5	Q02784	150 aa		2.71	□□□□□ -1.98
NPL4	YBR170C	PIR1	Q03178	341 aa		2.71	□□□□□ -1.98
NPL4	YBR170C	DML1	Q03652	475 aa		2.71	□□□□□ -1.98
NPL4	YBR170C	ANT1	Q06497	328 aa		2.71	□□□□□ -1.98
NPL4	YBR170C	YOL162W	P0CF19	215 aa		2.7	□□□□□ -1.98
NPL4	YBR170C	YHL018W	P38744	120 aa	Predicted RBP	2.7	□□□□□ -1.98
NPL4	YBR170C	YNR064C	P53750	290 aa		2.7	□□□□□ -1.98
NPL4	YBR170C	RPC19	P28000	142 aa	Known RBP	2.69	□□□□□ -1.98
NPL4	YBR170C	SUA7	P29055	345 aa	Predicted RBP	2.69	□□□□□ -1.98
NPL4	YBR170C	GSP2	P32836	220 aa	Known RBP	2.69	□□□□□ -1.98
NPL4	YBR170C	YRA2	P36036	203 aa	Known RBP RIP-Chip data	2.69	□□□□□ -1.98	not detected
NPL4	YBR170C	PRS3	P38689	320 aa	Known RBP	2.69	□□□□□ -1.98
NPL4	YBR170C	AYR1	P40471	297 aa		2.69	□□□□□ -1.98
NPL4	YBR170C	GPI2	P46961	280 aa		2.69	□□□□□ -1.98
NPL4	YBR170C	PAC10	P48363	199 aa		2.69	□□□□□ -1.98
NPL4	YBR170C	HHO1	P53551	258 aa		2.69	□□□□□ -1.98
NPL4	YBR170C	DYN2	Q02647	92 aa		2.69	□□□□□ -1.98
NPL4	YBR170C	RFU1	Q08003	200 aa		2.69	□□□□□ -1.98
NPL4	YBR170C	MSB2	P32334	1306 aa		2.69	□□□□□ -1.98
NPL4	YBR170C	MDH2	P22133	377 aa		2.68	□□□□□ -1.98
NPL4	YBR170C	YGR039W	P53225	103 aa		2.68	□□□□□ -1.98
NPL4	YBR170C	FMN1	Q03778	218 aa		2.68	□□□□□ -1.98
NPL4	YBR170C	UPS1	Q05776	175 aa		2.68	□□□□□ -1.98
NPL4	YBR170C	YPR114W	Q06107	315 aa		2.68	□□□□□ -1.98
NPL4	YBR170C	ATG10	Q07879	167 aa		2.68	□□□□□ -1.98
NPL4	YBR170C	ATG41	Q12048	136 aa		2.68	□□□□□ -1.98
NPL4	YBR170C	COX8	P04039	78 aa		2.68	□□□□□ -1.98
NPL4	YBR170C	MRS4	P23500	304 aa		2.68	□□□□□ -1.98
NPL4	YBR170C	YPT31	P38555	223 aa	Known RBP	2.68	□□□□□ -1.98
NPL4	YBR170C	NSE4	P43124	402 aa		2.68	□□□□□ -1.98
NPL4	YBR170C	BUD25	P85052	153 aa		2.68	□□□□□ -1.98
NPL4	YBR170C	UPS3	Q04006	179 aa		2.68	□□□□□ -1.98
NPL4	YBR170C	YKR045C	P36138	183 aa		2.67	□□□□□ -1.98
NPL4	YBR170C	TIM8	P57744	87 aa		2.67	□□□□□ -1.98
NPL4	YBR170C	EST3	Q03096	181 aa		2.67	□□□□□ -1.98
NPL4	YBR170C	YHP1	Q04116	353 aa		2.67	□□□□□ -1.98
NPL4	YBR170C	SRP21	P32342	167 aa		2.66	□□□□□ -1.98
NPL4	YBR170C	TMA19	P35691	167 aa	Known RBP	2.66	□□□□□ -1.98
NPL4	YBR170C	NRG2	P38082	220 aa		2.66	□□□□□ -1.98
NPL4	YBR170C	YHR086W-A	Q3E746	53 aa		2.66	□□□□□ -1.98
NPL4	YBR170C	DDR48	P18899	430 aa	Known RBP	2.65	□□□□□ -1.98
NPL4	YBR170C	HSP12	P22943	109 aa	Known RBP	2.65	□□□□□ -1.98
NPL4	YBR170C	SHB17	P36136	271 aa	Known RBP	2.65	□□□□□ -1.98
NPL4	YBR170C	GLC8	P41818	229 aa		2.65	□□□□□ -1.98
NPL4	YBR170C	FIT2	Q08906	153 aa		2.65	□□□□□ -1.98
NPL4	YBR170C	BOL1	Q3E793	110 aa		2.65	□□□□□ -1.98
NPL4	YBR170C	SEN2	P16658	377 aa		2.65	□□□□□ -1.99
NPL4	YBR170C	PEP8	P40335	379 aa		2.65	□□□□□ -1.99
NPL4	YBR170C	YDR278C	Q05612	105 aa		2.65	□□□□□ -1.99
NPL4	YBR170C	SPC3	Q12133	184 aa		2.65	□□□□□ -1.99
NPL4	YBR170C	ATP14	Q12349	124 aa		2.65	□□□□□ -1.99
NPL4	YBR170C	RAD50	P12753	1312 aa		2.65	□□□□□ -1.99
NPL4	YBR170C	MDM35	O60200	86 aa		2.64	□□□□□ -1.99
NPL4	YBR170C	GPA2	P10823	449 aa		2.64	□□□□□ -1.99
NPL4	YBR170C	NHP6A	P11632	93 aa	Known RBP	2.64	□□□□□ -1.99
NPL4	YBR170C	FLO9	P39712	1322 aa		2.64	□□□□□ -1.99
NPL4	YBR170C	MPM1	P40364	252 aa		2.64	□□□□□ -1.99
NPL4	YBR170C	UIP4	Q08926	304 aa		2.64	□□□□□ -1.99
NPL4	YBR170C	INO4	P13902	151 aa		2.63	□□□□□ -1.99
NPL4	YBR170C	MAK31	P23059	88 aa		2.63	□□□□□ -1.99
NPL4	YBR170C	AHT1	P29589	182 aa		2.63	□□□□□ -1.99
NPL4	YBR170C	SUI1	P32911	108 aa	Known RBP	2.63	□□□□□ -1.99
NPL4	YBR170C	TRS20	P38334	175 aa		2.63	□□□□□ -1.99
NPL4	YBR170C	YHR140W	P38842	239 aa		2.63	□□□□□ -1.99
NPL4	YBR170C	RRT7	Q07829	113 aa		2.63	□□□□□ -1.99
NPL4	YBR170C	YEL067C	P39978	195 aa		2.62	□□□□□ -1.99
NPL4	YBR170C	CCS1	P40202	249 aa	Known RBP	2.62	□□□□□ -1.99
NPL4	YBR170C	MOB1	P40484	314 aa		2.62	□□□□□ -1.99
NPL4	YBR170C	GEP7	P53171	287 aa		2.62	□□□□□ -1.99
NPL4	YBR170C	YML079W	Q03629	201 aa		2.62	□□□□□ -1.99
NPL4	YBR170C	YDL241W	Q07738	123 aa		2.62	□□□□□ -1.99
NPL4	YBR170C	SPA2	P23201	1466 aa	Known RBP	2.62	□□□□□ -1.99
NPL4	YBR170C	RPS20	P38701	121 aa	Known RBP	2.62	□□□□□ -1.99
NPL4	YBR170C	ALB1	P47019	175 aa	Predicted RBP	2.62	□□□□□ -1.99
NPL4	YBR170C	YHR007C-A	Q07074	71 aa		2.62	□□□□□ -1.99
NPL4	YBR170C	UBR1	P19812	1950 aa		2.61	□□□□□ -1.99
NPL4	YBR170C	SPS2	P08459	502 aa		2.61	□□□□□ -1.99
NPL4	YBR170C	STF2	P16965	84 aa		2.61	□□□□□ -1.99
NPL4	YBR170C	YNL019C	P53975	284 aa		2.61	□□□□□ -1.99
NPL4	YBR170C	CSI2	Q08054	341 aa		2.61	□□□□□ -1.99
NPL4	YBR170C	YGR269W	P40326	108 aa		2.6	□□□□□ -1.99
NPL4	YBR170C	APS3	P47064	194 aa		2.6	□□□□□ -1.99
NPL4	YBR170C	CNL1	Q06333	122 aa		2.6	□□□□□ -1.99
NPL4	YBR170C	FCY1	Q12178	158 aa		2.6	□□□□□ -1.99
NPL4	YBR170C	YBR219C	P38317	127 aa		2.59	□□□□□ -1.99
NPL4	YBR170C	SCS22	Q6Q595	175 aa		2.59	□□□□□ -1.99
NPL4	YBR170C	FMP49	A0A023PZB3	126 aa		2.59	□□□□□ -2
NPL4	YBR170C	HYM1	P32464	399 aa		2.59	□□□□□ -2
NPL4	YBR170C	RPL14A	P36105	138 aa	Known RBP	2.59	□□□□□ -2
NPL4	YBR170C	RPL14B	P38754	138 aa	Known RBP	2.59	□□□□□ -2
NPL4	YBR170C	CIN5	P40917	295 aa		2.59	□□□□□ -2

Retrieved 100 of 5,963 RNA–protein pairs in 9.8 ms