RNA–Protein interactions for RNA: YBR165W

UBS1, Transcript of Ubiquitin-conjugating enzyme suppressor that regulates Cdc34p, yeast

Gene UBS1, Length 834 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBS1	YBR165W	SED1	Q01589	338 aa		0.66	□□□□□ -2.3
UBS1	YBR165W	YML079W	Q03629	201 aa		0.66	□□□□□ -2.3
UBS1	YBR165W	NVJ1	P38881	321 aa		0.65	□□□□□ -2.31
UBS1	YBR165W	YDL157C	Q12082	118 aa		0.65	□□□□□ -2.31
UBS1	YBR165W	YHR213W-B	Q8TGK1	99 aa		0.65	□□□□□ -2.31
UBS1	YBR165W	CLG1	P35190	452 aa		0.64	□□□□□ -2.31
UBS1	YBR165W	YGR269W	P40326	108 aa		0.64	□□□□□ -2.31
UBS1	YBR165W	SOL1	P50278	321 aa		0.64	□□□□□ -2.31
UBS1	YBR165W	NQM1	P53228	333 aa	Predicted RBP	0.64	□□□□□ -2.31
UBS1	YBR165W	TIM13	P53299	105 aa		0.64	□□□□□ -2.31
UBS1	YBR165W	SNO1	Q03144	224 aa		0.64	□□□□□ -2.31
UBS1	YBR165W	PRM3	Q08931	133 aa		0.64	□□□□□ -2.31
UBS1	YBR165W	RAD6	P06104	172 aa		0.62	□□□□□ -2.31
UBS1	YBR165W	APS3	P47064	194 aa		0.62	□□□□□ -2.31
UBS1	YBR165W	SPS2	P08459	502 aa		0.61	□□□□□ -2.31
UBS1	YBR165W	RPS25B	P0C0T4	108 aa	Known RBP	0.61	□□□□□ -2.31
UBS1	YBR165W	APA2	P22108	325 aa		0.61	□□□□□ -2.31
UBS1	YBR165W	YET3	Q07451	203 aa		0.61	□□□□□ -2.31
UBS1	YBR165W	RPS25A	Q3E792	108 aa	Predicted RBP	0.61	□□□□□ -2.31
UBS1	YBR165W	CIN5	P40917	295 aa		0.6	□□□□□ -2.31
UBS1	YBR165W	GLC8	P41818	229 aa		0.6	□□□□□ -2.31
UBS1	YBR165W	XPT1	P47165	209 aa		0.6	□□□□□ -2.31
UBS1	YBR165W	NUF2	P33895	451 aa		0.59	□□□□□ -2.31
UBS1	YBR165W	GLR1	P41921	483 aa	Known RBP	0.59	□□□□□ -2.31
UBS1	YBR165W	HOP2	P53187	214 aa		0.59	□□□□□ -2.31
UBS1	YBR165W	RIF1	P29539	1916 aa		0.59	□□□□□ -2.32
UBS1	YBR165W	YEL028W	P39989	153 aa		0.57	□□□□□ -2.32
UBS1	YBR165W	JAC1	P53193	184 aa		0.57	□□□□□ -2.32
UBS1	YBR165W	SYM1	Q06563	197 aa		0.57	□□□□□ -2.32
UBS1	YBR165W	HRD1	Q08109	551 aa		0.57	□□□□□ -2.32
UBS1	YBR165W	TRM3	Q07527	1436 aa		0.56	□□□□□ -2.32
UBS1	YBR165W	YBR027C	P38220	110 aa		0.56	□□□□□ -2.32
UBS1	YBR165W	CSH1	P38287	376 aa		0.56	□□□□□ -2.32
UBS1	YBR165W	CCC1	P47818	322 aa		0.56	□□□□□ -2.32
UBS1	YBR165W	INO4	P13902	151 aa		0.55	□□□□□ -2.32
UBS1	YBR165W	GEP7	P53171	287 aa		0.55	□□□□□ -2.32
UBS1	YBR165W	TAF2	P23255	1407 aa		0.55	□□□□□ -2.32
UBS1	YBR165W	SPT14	P32363	452 aa		0.54	□□□□□ -2.32
UBS1	YBR165W	YDL241W	Q07738	123 aa		0.54	□□□□□ -2.32
UBS1	YBR165W	VAM10	Q08474	114 aa		0.54	□□□□□ -2.32
UBS1	YBR165W	LIP1	Q03579	150 aa		0.53	□□□□□ -2.32
UBS1	YBR165W	ATG10	Q07879	167 aa		0.53	□□□□□ -2.32
UBS1	YBR165W	ROM2	P51862	1356 aa	Known RBP	0.53	□□□□□ -2.32
UBS1	YBR165W	ATP7	P30902	174 aa		0.52	□□□□□ -2.33
UBS1	YBR165W	TRR1	P29509	319 aa	Known RBP	0.5	□□□□□ -2.33
UBS1	YBR165W	ATG8	P38182	117 aa	RIP-Chip data	0.5	□□□□□ -2.33	not detected
UBS1	YBR165W	YNL122C	P53921	115 aa	Predicted RBP	0.5	□□□□□ -2.33
UBS1	YBR165W	UIP4	Q08926	304 aa		0.5	□□□□□ -2.33
UBS1	YBR165W	CMC4	Q3E7A9	73 aa		0.5	□□□□□ -2.33
UBS1	YBR165W	YPR114W	Q06107	315 aa		0.49	□□□□□ -2.33
UBS1	YBR165W	PEX11	Q12462	236 aa		0.49	□□□□□ -2.33
UBS1	YBR165W	YPT31	P38555	223 aa	Known RBP	0.48	□□□□□ -2.33
UBS1	YBR165W	YEL014C	P39999	101 aa		0.48	□□□□□ -2.33
UBS1	YBR165W	MGR2	Q02889	113 aa		0.48	□□□□□ -2.33
UBS1	YBR165W	PLP1	Q04004	230 aa		0.48	□□□□□ -2.33
UBS1	YBR165W	YOR072W	Q08486	104 aa		0.48	□□□□□ -2.33
UBS1	YBR165W	RPS22A	P0C0W1	130 aa	Known RBP	0.47	□□□□□ -2.33
UBS1	YBR165W	PTC1	P35182	281 aa		0.47	□□□□□ -2.33
UBS1	YBR165W	THI74	Q04083	370 aa		0.47	□□□□□ -2.33
UBS1	YBR165W	RPS22B	Q3E7Y3	130 aa	Known RBP	0.47	□□□□□ -2.33
UBS1	YBR165W	HAP2	P06774	265 aa		0.45	□□□□□ -2.34
UBS1	YBR165W	YMR141C	P40211	102 aa		0.45	□□□□□ -2.34
UBS1	YBR165W	GRX3	Q03835	250 aa		0.45	□□□□□ -2.34
UBS1	YBR165W	RIB3	Q99258	208 aa		0.45	□□□□□ -2.34
UBS1	YBR165W	SRP102	P36057	244 aa	Predicted RBP	0.44	□□□□□ -2.34
UBS1	YBR165W	YDR102C	Q03864	110 aa		0.44	□□□□□ -2.34
UBS1	YBR165W	YLR050C	Q12155	161 aa	Known RBP	0.44	□□□□□ -2.34
UBS1	YBR165W	RPL43A	P0CX25	92 aa	Known RBP	0.43	□□□□□ -2.34
UBS1	YBR165W	RPL43B	P0CX26	92 aa		0.43	□□□□□ -2.34
UBS1	YBR165W	RAD51	P25454	400 aa		0.43	□□□□□ -2.34
UBS1	YBR165W	ECM31	P38122	312 aa		0.43	□□□□□ -2.34
UBS1	YBR165W	GRE1	Q08969	168 aa		0.43	□□□□□ -2.34
UBS1	YBR165W	HSP150	P32478	413 aa		0.42	□□□□□ -2.34
UBS1	YBR165W	HSK3	P69852	69 aa		0.42	□□□□□ -2.34
UBS1	YBR165W	YLR307C-A	Q3E825	87 aa		0.42	□□□□□ -2.34
UBS1	YBR165W	SEC72	P39742	193 aa	Known RBP	0.41	□□□□□ -2.34
UBS1	YBR165W	YNR064C	P53750	290 aa		0.41	□□□□□ -2.34
UBS1	YBR165W	HYP2	P23301	157 aa	Known RBP	0.4	□□□□□ -2.35
UBS1	YBR165W	YIP3	P53633	176 aa		0.4	□□□□□ -2.35
UBS1	YBR165W	SEN15	Q04675	128 aa		0.4	□□□□□ -2.35
UBS1	YBR165W	UBC6	P33296	250 aa	Predicted RBP	0.39	□□□□□ -2.35
UBS1	YBR165W	ADE6	P38972	1358 aa	Known RBP	0.39	□□□□□ -2.35
UBS1	YBR165W	CDC39	P25655	2108 aa	Known RBP	0.37	□□□□□ -2.35
UBS1	YBR165W	NMA1	Q06178	401 aa	Known RBP	0.37	□□□□□ -2.35
UBS1	YBR165W	CMD1	P06787	147 aa	Known RBP	0.36	□□□□□ -2.35
UBS1	YBR165W	YHR140W	P38842	239 aa		0.36	□□□□□ -2.35
UBS1	YBR165W	YNL140C	P53910	189 aa		0.36	□□□□□ -2.35
UBS1	YBR165W	IPT1	P38954	527 aa		0.35	□□□□□ -2.35
UBS1	YBR165W	YLR157W-E	P0CF00	54 aa		0.34	□□□□□ -2.36
UBS1	YBR165W	GIM3	P53900	129 aa		0.34	□□□□□ -2.36
UBS1	YBR165W	TMA20	P89886	181 aa	Predicted RBP	0.34	□□□□□ -2.36
UBS1	YBR165W	ATP5	P09457	212 aa		0.33	□□□□□ -2.36
UBS1	YBR165W	MRS4	P23500	304 aa		0.33	□□□□□ -2.36
UBS1	YBR165W	EGD2	P38879	174 aa	Known RBP	0.33	□□□□□ -2.36
UBS1	YBR165W	SRP14	P38985	146 aa		0.33	□□□□□ -2.36
UBS1	YBR165W	FMN1	Q03778	218 aa		0.33	□□□□□ -2.36
UBS1	YBR165W	RPL33A	P05744	107 aa	Known RBP	0.32	□□□□□ -2.36
UBS1	YBR165W	HTD2	P38790	280 aa	Known RBP	0.32	□□□□□ -2.36
UBS1	YBR165W	YGL101W	P53144	215 aa		0.32	□□□□□ -2.36
UBS1	YBR165W	RCF2	P53721	224 aa		0.31	□□□□□ -2.36

Retrieved 100 of 5,963 RNA–protein pairs in 35.2 ms