RNA–Protein interactions for RNA: YBR135W

CKS1, Transcript of Cyclin-dependent protein kinase regulatory subunit and adaptor, yeast

Gene CKS1, Length 453 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CKS1	YBR135W	FCY2	P17064	533 aa		3.17	□□□□□ -1.9
CKS1	YBR135W	SUI1	P32911	108 aa	Known RBP	3.17	□□□□□ -1.9
CKS1	YBR135W	SLM6	P38343	150 aa		3.17	□□□□□ -1.9
CKS1	YBR135W	GLE2	P40066	365 aa		3.17	□□□□□ -1.9
CKS1	YBR135W	PEX17	P40155	199 aa		3.17	□□□□□ -1.9
CKS1	YBR135W	HPM1	P40481	377 aa		3.17	□□□□□ -1.9
CKS1	YBR135W	SLM2	P53955	656 aa		3.17	□□□□□ -1.9
CKS1	YBR135W	HSK3	P69852	69 aa		3.17	□□□□□ -1.9
CKS1	YBR135W	UBC7	Q02159	165 aa		3.17	□□□□□ -1.9
CKS1	YBR135W	NEJ1	Q06148	342 aa		3.17	□□□□□ -1.9
CKS1	YBR135W	FRQ1	Q06389	190 aa		3.17	□□□□□ -1.9
CKS1	YBR135W	MDM32	Q12171	622 aa		3.17	□□□□□ -1.9
CKS1	YBR135W	MHT1	Q12525	324 aa		3.17	□□□□□ -1.9
CKS1	YBR135W	RIB3	Q99258	208 aa		3.17	□□□□□ -1.9
CKS1	YBR135W	SAS5	Q99314	248 aa		3.17	□□□□□ -1.9
CKS1	YBR135W	YHR139C-A	O13536	103 aa		3.16	□□□□□ -1.9
CKS1	YBR135W	SCO1	P23833	295 aa		3.16	□□□□□ -1.9
CKS1	YBR135W	OCH1	P31755	480 aa		3.16	□□□□□ -1.9
CKS1	YBR135W	CAT5	P41735	233 aa		3.16	□□□□□ -1.9
CKS1	YBR135W	CUP9	P41817	306 aa		3.16	□□□□□ -1.9
CKS1	YBR135W	AIM25	P47140	327 aa		3.16	□□□□□ -1.9
CKS1	YBR135W	RBL2	P48606	106 aa	Known RBP	3.16	□□□□□ -1.9
CKS1	YBR135W	YNL184C	P53876	108 aa		3.16	□□□□□ -1.9
CKS1	YBR135W	PET191	Q02772	108 aa		3.16	□□□□□ -1.9
CKS1	YBR135W	MET31	Q03081	177 aa		3.16	□□□□□ -1.9
CKS1	YBR135W	YPL257W	Q08974	193 aa		3.16	□□□□□ -1.9
CKS1	YBR135W	PST2	Q12335	198 aa	Known RBP	3.16	□□□□□ -1.9
CKS1	YBR135W	SLO1	Q3E784	85 aa		3.16	□□□□□ -1.9
CKS1	YBR135W	HTL1	Q9URQ5	78 aa		3.16	□□□□□ -1.9
CKS1	YBR135W	PBI2	P0CT04	75 aa	Known RBP	3.15	□□□□□ -1.91
CKS1	YBR135W	MRPS28	P21771	286 aa		3.15	□□□□□ -1.91
CKS1	YBR135W	AHC2	P25649	128 aa		3.15	□□□□□ -1.91
CKS1	YBR135W	RPS27A	P35997	82 aa	Known RBP	3.15	□□□□□ -1.91
CKS1	YBR135W	RPS27B	P38711	82 aa		3.15	□□□□□ -1.91
CKS1	YBR135W	ARC15	P40518	154 aa	RIP-Chip data	3.15	□□□□□ -1.91	not detected
CKS1	YBR135W	FAR7	P43592	221 aa		3.15	□□□□□ -1.91
CKS1	YBR135W	RPA43	P46669	326 aa		3.15	□□□□□ -1.91
CKS1	YBR135W	YJR146W	P47174	117 aa		3.15	□□□□□ -1.91
CKS1	YBR135W	UBC12	P52491	188 aa		3.15	□□□□□ -1.91
CKS1	YBR135W	PRM8	P53174	237 aa		3.15	□□□□□ -1.91
CKS1	YBR135W	ARL3	Q02804	198 aa		3.15	□□□□□ -1.91
CKS1	YBR135W	MIX17	Q03667	156 aa		3.15	□□□□□ -1.91
CKS1	YBR135W	YDR249C	Q03787	373 aa		3.15	□□□□□ -1.91
CKS1	YBR135W	RAV2	Q03956	351 aa		3.15	□□□□□ -1.91
CKS1	YBR135W	YPR202W	Q08993	238 aa		3.15	□□□□□ -1.91
CKS1	YBR135W	SLH1	P53327	1967 aa	Known RBP	3.14	□□□□□ -1.91
CKS1	YBR135W	RPL43A	P0CX25	92 aa	Known RBP	3.14	□□□□□ -1.91
CKS1	YBR135W	RPL43B	P0CX26	92 aa		3.14	□□□□□ -1.91
CKS1	YBR135W	GSP1	P32835	219 aa	Known RBP	3.14	□□□□□ -1.91
CKS1	YBR135W	GSP2	P32836	220 aa	Known RBP	3.14	□□□□□ -1.91
CKS1	YBR135W	APS1	P35181	156 aa		3.14	□□□□□ -1.91
CKS1	YBR135W	DOG2	P38773	246 aa		3.14	□□□□□ -1.91
CKS1	YBR135W	DOG1	P38774	246 aa		3.14	□□□□□ -1.91
CKS1	YBR135W	YHR125W	P38831	101 aa		3.14	□□□□□ -1.91
CKS1	YBR135W	SDH7	Q04401	133 aa		3.14	□□□□□ -1.91
CKS1	YBR135W	YOR304C-A	O14468	76 aa		3.13	□□□□□ -1.91
CKS1	YBR135W	RAS2	P01120	322 aa	Known RBP	3.13	□□□□□ -1.91
CKS1	YBR135W	Q0255	P03881	472 aa		3.13	□□□□□ -1.91
CKS1	YBR135W	CCA1	P21269	546 aa		3.13	□□□□□ -1.91
CKS1	YBR135W	ATG22	P25568	528 aa		3.13	□□□□□ -1.91
CKS1	YBR135W	YCR101C	P25607	182 aa		3.13	□□□□□ -1.91
CKS1	YBR135W	RPC19	P28000	142 aa	Known RBP	3.13	□□□□□ -1.91
CKS1	YBR135W	FMP23	P38231	175 aa		3.13	□□□□□ -1.91
CKS1	YBR135W	YBR285W	P38354	144 aa		3.13	□□□□□ -1.91
CKS1	YBR135W	RPF1	P38805	295 aa	Known RBP	3.13	□□□□□ -1.91
CKS1	YBR135W	SMD3	P43321	101 aa	Known RBP	3.13	□□□□□ -1.91
CKS1	YBR135W	GPI14	P47088	403 aa	Known RBP	3.13	□□□□□ -1.91
CKS1	YBR135W	YJR015W	P47090	510 aa		3.13	□□□□□ -1.91
CKS1	YBR135W	ERV29	P53337	310 aa		3.13	□□□□□ -1.91
CKS1	YBR135W	LSM7	P53905	115 aa	Known RBP	3.13	□□□□□ -1.91
CKS1	YBR135W	YNL010W	P53981	241 aa	Known RBP	3.13	□□□□□ -1.91
CKS1	YBR135W	GAS3	Q03655	524 aa		3.13	□□□□□ -1.91
CKS1	YBR135W	SHH4	Q06236	168 aa		3.13	□□□□□ -1.91
CKS1	YBR135W	YOL160W	Q08321	113 aa		3.13	□□□□□ -1.91
CKS1	YBR135W	NIP7	Q08962	181 aa	Known RBP	3.13	□□□□□ -1.91
CKS1	YBR135W	YPL225W	Q08971	146 aa	Known RBP	3.13	□□□□□ -1.91
CKS1	YBR135W	YOR342C	Q12182	319 aa		3.13	□□□□□ -1.91
CKS1	YBR135W	SEC4	P07560	215 aa	Known RBP	3.12	□□□□□ -1.91
CKS1	YBR135W	YSF3	P0C074	85 aa	Predicted RBP	3.12	□□□□□ -1.91
CKS1	YBR135W	SNF4	P12904	322 aa		3.12	□□□□□ -1.91
CKS1	YBR135W	UTR5	P32630	166 aa		3.12	□□□□□ -1.91
CKS1	YBR135W	CLB6	P32943	380 aa		3.12	□□□□□ -1.91
CKS1	YBR135W	SFK1	P35735	353 aa		3.12	□□□□□ -1.91
CKS1	YBR135W	RGI1	P40043	161 aa	Predicted RBP	3.12	□□□□□ -1.91
CKS1	YBR135W	RPS12	P48589	143 aa	Known RBP	3.12	□□□□□ -1.91
CKS1	YBR135W	YGL101W	P53144	215 aa		3.12	□□□□□ -1.91
CKS1	YBR135W	YMR320W	Q04897	101 aa		3.12	□□□□□ -1.91
CKS1	YBR135W	YPR174C	Q06616	221 aa	Predicted RBP	3.12	□□□□□ -1.91
CKS1	YBR135W	RDS3	Q06835	107 aa	Predicted RBP	3.12	□□□□□ -1.91
CKS1	YBR135W	YOR020W-A	Q3E824	90 aa		3.12	□□□□□ -1.91
CKS1	YBR135W	YBR056W-A	I2HB52	66 aa		3.11	□□□□□ -1.91
CKS1	YBR135W	RPL25	P04456	142 aa	Known RBP	3.11	□□□□□ -1.91
CKS1	YBR135W	SIR2	P06700	562 aa		3.11	□□□□□ -1.91
CKS1	YBR135W	TFC1	P32367	649 aa		3.11	□□□□□ -1.91
CKS1	YBR135W	SCM4	P32564	187 aa		3.11	□□□□□ -1.91
CKS1	YBR135W	SEC17	P32602	292 aa		3.11	□□□□□ -1.91
CKS1	YBR135W	YBR032W	P38223	100 aa		3.11	□□□□□ -1.91
CKS1	YBR135W	AYR1	P40471	297 aa		3.11	□□□□□ -1.91
CKS1	YBR135W	GLC8	P41818	229 aa		3.11	□□□□□ -1.91
CKS1	YBR135W	DID2	P69771	204 aa		3.11	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 27.7 ms