RNA–Protein interactions for RNA: YKR036C

CAF4, Transcript of WD40 repeat-containing protein associated with the CCR4-NOT complex, yeast

Gene CAF4, Length 1,932 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF4	YKR036C	TSA2	Q04120	196 aa		4.2	□□□□□ -1.74
CAF4	YKR036C	SOR2	Q07786	357 aa		4.2	□□□□□ -1.74
CAF4	YKR036C	PRM3	Q08931	133 aa		4.2	□□□□□ -1.74
CAF4	YKR036C	UBA3	Q99344	299 aa		4.2	□□□□□ -1.74
CAF4	YKR036C	TIM12	P32830	109 aa		4.19	□□□□□ -1.74
CAF4	YKR036C	MNS1	P32906	549 aa		4.19	□□□□□ -1.74
CAF4	YKR036C	YPL077C	Q02831	240 aa		4.19	□□□□□ -1.74
CAF4	YKR036C	YPR174C	Q06616	221 aa	Predicted RBP	4.19	□□□□□ -1.74
CAF4	YKR036C	ALG6	Q12001	544 aa	Known RBP	4.19	□□□□□ -1.74
CAF4	YKR036C	PFA4	Q12006	378 aa		4.19	□□□□□ -1.74
CAF4	YKR036C	YPR064W	Q12492	139 aa		4.19	□□□□□ -1.74
CAF4	YKR036C	YOS1	Q3E834	85 aa		4.19	□□□□□ -1.74
CAF4	YKR036C	ADH1	P00330	348 aa	Known RBP	4.19	□□□□□ -1.74
CAF4	YKR036C	SEC4	P07560	215 aa	Known RBP	4.19	□□□□□ -1.74
CAF4	YKR036C	YER190C-B	P0CX94	160 aa		4.19	□□□□□ -1.74
CAF4	YKR036C	YEL077W-A	P0CX95	160 aa		4.19	□□□□□ -1.74
CAF4	YKR036C	YGR296C-B	P0CX96	160 aa		4.19	□□□□□ -1.74
CAF4	YKR036C	YPL283W-B	P0CX97	160 aa		4.19	□□□□□ -1.74
CAF4	YKR036C	YPR204C-A	P0CX98	160 aa		4.19	□□□□□ -1.74
CAF4	YKR036C	PPA2	P28239	310 aa		4.19	□□□□□ -1.74
CAF4	YKR036C	LYS1	P38998	373 aa	RIP-Chip data	4.19	□□□□□ -1.74	not detected
CAF4	YKR036C	SPG5	P42933	373 aa		4.19	□□□□□ -1.74
CAF4	YKR036C	GPI2	P46961	280 aa		4.19	□□□□□ -1.74
CAF4	YKR036C	BOR1	P53838	576 aa		4.19	□□□□□ -1.74
CAF4	YKR036C	SUR7	P54003	302 aa		4.19	□□□□□ -1.74
CAF4	YKR036C	IRC13	Q08630	104 aa		4.19	□□□□□ -1.74
CAF4	YKR036C	YLR363W-A	Q3E747	85 aa		4.19	□□□□□ -1.74
CAF4	YKR036C	SCS22	Q6Q595	175 aa		4.19	□□□□□ -1.74
CAF4	YKR036C	ZRT1	P32804	376 aa		4.18	□□□□□ -1.74
CAF4	YKR036C	YOX1	P34161	385 aa		4.18	□□□□□ -1.74
CAF4	YKR036C	ERG26	P53199	349 aa	Known RBP	4.18	□□□□□ -1.74
CAF4	YKR036C	YNL092W	P53934	400 aa		4.18	□□□□□ -1.74
CAF4	YKR036C	RPS13	P05756	151 aa	Known RBP	4.17	□□□□□ -1.74
CAF4	YKR036C	YKL107W	P34251	309 aa		4.17	□□□□□ -1.74
CAF4	YKR036C	GPX1	P36014	167 aa		4.17	□□□□□ -1.74
CAF4	YKR036C	SWD2	P36104	329 aa	Predicted RBP	4.17	□□□□□ -1.74
CAF4	YKR036C	SHB17	P36136	271 aa	Known RBP	4.17	□□□□□ -1.74
CAF4	YKR036C	TRM7	P38238	310 aa	Known RBP	4.17	□□□□□ -1.74
CAF4	YKR036C	CRH1	P53301	507 aa		4.17	□□□□□ -1.74
CAF4	YKR036C	EOS1	P53938	366 aa		4.17	□□□□□ -1.74
CAF4	YKR036C	ROT1	Q03691	256 aa		4.17	□□□□□ -1.74
CAF4	YKR036C	NAT3	Q06504	195 aa		4.17	□□□□□ -1.74
CAF4	YKR036C	PRP11	Q07350	266 aa	Predicted RBP	4.17	□□□□□ -1.74
CAF4	YKR036C	RPL7B	Q12213	244 aa	Known RBP	4.17	□□□□□ -1.74
CAF4	YKR036C	RPS22B	Q3E7Y3	130 aa	Known RBP	4.17	□□□□□ -1.74
CAF4	YKR036C	PRP8	P33334	2413 aa	Known RBP	4.17	□□□□□ -1.74
CAF4	YKR036C	YBR056W-A	I2HB52	66 aa		4.17	□□□□□ -1.74
CAF4	YKR036C	YPT1	P01123	206 aa	Known RBP	4.17	□□□□□ -1.74
CAF4	YKR036C	CDC36	P06100	191 aa	Predicted RBP	4.17	□□□□□ -1.74
CAF4	YKR036C	COX10	P21592	462 aa		4.17	□□□□□ -1.74
CAF4	YKR036C	HYP2	P23301	157 aa	Known RBP	4.17	□□□□□ -1.74
CAF4	YKR036C	NUD1	P32336	851 aa		4.17	□□□□□ -1.74
CAF4	YKR036C	SRP21	P32342	167 aa		4.17	□□□□□ -1.74
CAF4	YKR036C	ERG2	P32352	222 aa		4.17	□□□□□ -1.74
CAF4	YKR036C	YKR070W	P36151	352 aa	Known RBP	4.17	□□□□□ -1.74
CAF4	YKR036C	NTC20	P38302	140 aa	Predicted RBP	4.17	□□□□□ -1.74
CAF4	YKR036C	OM14	P38325	134 aa		4.17	□□□□□ -1.74
CAF4	YKR036C	MSO1	P53604	210 aa	Known RBP	4.17	□□□□□ -1.74
CAF4	YKR036C	YMR090W	Q04304	227 aa	Known RBP	4.17	□□□□□ -1.74
CAF4	YKR036C	GRH1	Q04410	372 aa	Known RBP	4.17	□□□□□ -1.74
CAF4	YKR036C	MRPL51	Q06090	140 aa	Predicted RBP	4.17	□□□□□ -1.74
CAF4	YKR036C	HRT1	Q08273	121 aa		4.17	□□□□□ -1.74
CAF4	YKR036C	THI72	Q08579	599 aa		4.17	□□□□□ -1.74
CAF4	YKR036C	FOL3	Q12676	427 aa	Predicted RBP	4.17	□□□□□ -1.74
CAF4	YKR036C	YIL102C-A	Q2V2P5	75 aa		4.17	□□□□□ -1.74
CAF4	YKR036C	YIR021W-A	Q3E739	70 aa		4.17	□□□□□ -1.74
CAF4	YKR036C	OPI3	P05375	206 aa		4.16	□□□□□ -1.74
CAF4	YKR036C	INO4	P13902	151 aa		4.16	□□□□□ -1.74
CAF4	YKR036C	CTA1	P15202	515 aa		4.16	□□□□□ -1.74
CAF4	YKR036C	ATP10	P18496	279 aa		4.16	□□□□□ -1.74
CAF4	YKR036C	CPR2	P23285	205 aa		4.16	□□□□□ -1.74
CAF4	YKR036C	YCR006C	P25350	157 aa		4.16	□□□□□ -1.74
CAF4	YKR036C	LDB16	P25587	256 aa		4.16	□□□□□ -1.74
CAF4	YKR036C	RAD23	P32628	398 aa	Known RBP	4.16	□□□□□ -1.74
CAF4	YKR036C	YBR184W	P38299	523 aa		4.16	□□□□□ -1.74
CAF4	YKR036C	CAB4	P53332	305 aa		4.16	□□□□□ -1.74
CAF4	YKR036C	TRS23	Q03784	219 aa		4.16	□□□□□ -1.74
CAF4	YKR036C	YOR105W	Q08504	108 aa		4.16	□□□□□ -1.74
CAF4	YKR036C	TGS1	Q12052	315 aa		4.16	□□□□□ -1.74
CAF4	YKR036C	UTP23	Q12339	254 aa	Known RBP	4.16	□□□□□ -1.74
CAF4	YKR036C	GEP5	Q12393	293 aa		4.16	□□□□□ -1.74
CAF4	YKR036C	NPC2	Q12408	173 aa		4.16	□□□□□ -1.74
CAF4	YKR036C	RPS22A	P0C0W1	130 aa	Known RBP	4.15	□□□□□ -1.74
CAF4	YKR036C	CDC43	P18898	376 aa		4.15	□□□□□ -1.74
CAF4	YKR036C	PHD1	P36093	366 aa		4.15	□□□□□ -1.74
CAF4	YKR036C	FMP46	P36141	133 aa	Known RBP	4.15	□□□□□ -1.74
CAF4	YKR036C	PAM17	P36147	197 aa		4.15	□□□□□ -1.74
CAF4	YKR036C	YHR138C	P38841	114 aa	Predicted RBP	4.15	□□□□□ -1.74
CAF4	YKR036C	SRP14	P38985	146 aa		4.15	□□□□□ -1.74
CAF4	YKR036C	ERJ5	P43613	295 aa	Predicted RBP	4.15	□□□□□ -1.74
CAF4	YKR036C	OGG1	P53397	376 aa	Predicted RBP	4.15	□□□□□ -1.74
CAF4	YKR036C	DYN2	Q02647	92 aa		4.15	□□□□□ -1.74
CAF4	YKR036C	RIM9	Q04734	239 aa		4.15	□□□□□ -1.74
CAF4	YKR036C	ARC18	Q05933	178 aa	Known RBP	4.15	□□□□□ -1.74
CAF4	YKR036C	YPL264C	Q08980	353 aa		4.15	□□□□□ -1.74
CAF4	YKR036C	MCP1	Q12106	302 aa		4.15	□□□□□ -1.74
CAF4	YKR036C	YLR361C-A	Q3E795	98 aa		4.15	□□□□□ -1.74
CAF4	YKR036C	ISD11	Q6Q560	94 aa		4.15	□□□□□ -1.74
CAF4	YKR036C	VMA3	P25515	160 aa		4.15	□□□□□ -1.75
CAF4	YKR036C	RFA3	P26755	122 aa	Known RBP	4.15	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 20.7 ms