RNA–Protein interactions for RNA: YFR002W

NIC96, Transcript of Linker nucleoporin component of the nuclear pore complex (NPC), yeastyeast

Gene NIC96, Length 2,520 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NIC96YFR002W POL2P21951 2222 aaKnown RBP1.56□□□□□ -2.16
NIC96YFR002W RPS28BP0C0X0 67 aaKnown RBP1.56□□□□□ -2.16
NIC96YFR002W SNF4P12904 322 aa1.56□□□□□ -2.16
NIC96YFR002W PET9P18239 318 aaKnown RBP1.56□□□□□ -2.16
NIC96YFR002W AHC2P25649 128 aa1.56□□□□□ -2.16
NIC96YFR002W SLM6P38343 150 aa1.56□□□□□ -2.16
NIC96YFR002W CTR2P38865 189 aa1.56□□□□□ -2.16
NIC96YFR002W FMP32P43557 207 aa1.56□□□□□ -2.16
NIC96YFR002W YFR045WP43617 309 aa1.56□□□□□ -2.16
NIC96YFR002W MIG2P53035 382 aa1.56□□□□□ -2.16
NIC96YFR002W ARO8P53090 500 aaKnown RBP1.56□□□□□ -2.16
NIC96YFR002W ALG9P53868 555 aaKnown RBP1.56□□□□□ -2.16
NIC96YFR002W YMD8Q03697 442 aa1.56□□□□□ -2.16
NIC96YFR002W DYN3Q04949 312 aa1.56□□□□□ -2.16
NIC96YFR002W SHH4Q06236 168 aa1.56□□□□□ -2.16
NIC96YFR002W PEX11Q12462 236 aa1.56□□□□□ -2.16
NIC96YFR002W RPS28AQ3E7X9 67 aaPredicted RBP1.56□□□□□ -2.16
NIC96YFR002W IRA1P18963 3092 aa1.55□□□□□ -2.16
NIC96YFR002W REP2P03872 296 aa1.55□□□□□ -2.16
NIC96YFR002W RAD10P06838 210 aa1.55□□□□□ -2.16
NIC96YFR002W RPS23AP0CX29 145 aaKnown RBP1.55□□□□□ -2.16
NIC96YFR002W RPS23BP0CX30 145 aa1.55□□□□□ -2.16
NIC96YFR002W SMD3P43321 101 aaKnown RBP1.55□□□□□ -2.16
NIC96YFR002W RSM27P53305 110 aa1.55□□□□□ -2.16
NIC96YFR002W AIM34Q03673 198 aa1.55□□□□□ -2.16
NIC96YFR002W TRM12Q04235 462 aa1.55□□□□□ -2.16
NIC96YFR002W ATG39Q06159 398 aa1.55□□□□□ -2.16
NIC96YFR002W MCP1Q12106 302 aa1.55□□□□□ -2.16
NIC96YFR002W YLR156WP0CE96 114 aa1.55□□□□□ -2.16
NIC96YFR002W YLR159WP0CE97 114 aa1.55□□□□□ -2.16
NIC96YFR002W YLR161WP0CE98 114 aa1.55□□□□□ -2.16
NIC96YFR002W SCO1P23833 295 aa1.55□□□□□ -2.16
NIC96YFR002W YGP1P38616 354 aaKnown RBP1.55□□□□□ -2.16
NIC96YFR002W COS8P38723 381 aa1.55□□□□□ -2.16
NIC96YFR002W GLE2P40066 365 aa1.55□□□□□ -2.16
NIC96YFR002W RSM25P40496 264 aa1.55□□□□□ -2.16
NIC96YFR002W PRM10P42946 383 aa1.55□□□□□ -2.16
NIC96YFR002W YJR111CP47148 283 aaKnown RBP1.55□□□□□ -2.16
NIC96YFR002W SOL1P50278 321 aa1.55□□□□□ -2.16
NIC96YFR002W MPA43P53583 542 aaPredicted RBP1.55□□□□□ -2.16
NIC96YFR002W SWP1Q02795 286 aa1.55□□□□□ -2.16
NIC96YFR002W GPI17Q04080 534 aa1.55□□□□□ -2.16
NIC96YFR002W HNT1Q04344 158 aaKnown RBP1.55□□□□□ -2.16
NIC96YFR002W YOR268CQ08734 132 aa1.55□□□□□ -2.16
NIC96YFR002W PSF1Q12488 208 aa1.55□□□□□ -2.16
NIC96YFR002W MHT1Q12525 324 aa1.55□□□□□ -2.16
NIC96YFR002W DYN1P36022 4092 aa1.54□□□□□ -2.16
NIC96YFR002W POP4P38336 279 aa1.54□□□□□ -2.16
NIC96YFR002W YAR068WP39564 161 aa1.54□□□□□ -2.16
NIC96YFR002W HPT1Q04178 221 aaKnown RBP1.54□□□□□ -2.16
NIC96YFR002W RIO1Q12196 484 aaKnown RBP1.54□□□□□ -2.16
NIC96YFR002W IES3Q12345 250 aa1.54□□□□□ -2.16
NIC96YFR002W Q0255P03881 472 aa1.54□□□□□ -2.16
NIC96YFR002W RPL9AP05738 191 aaKnown RBP1.54□□□□□ -2.16
NIC96YFR002W PET54P10834 293 aa1.54□□□□□ -2.16
NIC96YFR002W RPB3P16370 318 aaKnown RBP1.54□□□□□ -2.16
NIC96YFR002W ATG22P25568 528 aa1.54□□□□□ -2.16
NIC96YFR002W YHR125WP38831 101 aa1.54□□□□□ -2.16
NIC96YFR002W SKI6P46948 246 aaPredicted RBP1.54□□□□□ -2.16
NIC96YFR002W RPL9BP51401 191 aaKnown RBP1.54□□□□□ -2.16
NIC96YFR002W CAB4P53332 305 aa1.54□□□□□ -2.16
NIC96YFR002W PGA1P53896 198 aa1.54□□□□□ -2.16
NIC96YFR002W SPC2Q04969 178 aa1.54□□□□□ -2.16
NIC96YFR002W SUE1Q06524 206 aa1.54□□□□□ -2.16
NIC96YFR002W DGA1Q08650 418 aa1.54□□□□□ -2.16
NIC96YFR002W YPR202WQ08993 238 aa1.54□□□□□ -2.16
NIC96YFR002W EFG1Q3E705 233 aaKnown RBP1.54□□□□□ -2.16
NIC96YFR002W YOR032W-AQ8TGS1 66 aa1.54□□□□□ -2.16
NIC96YFR002W HIS3P06633 220 aa1.53□□□□□ -2.16
NIC96YFR002W CMD1P06787 147 aaKnown RBP1.53□□□□□ -2.16
NIC96YFR002W SEC14P24280 304 aaKnown RBP1.53□□□□□ -2.16
NIC96YFR002W SDH4P37298 181 aa1.53□□□□□ -2.16
NIC96YFR002W OPY1P38271 328 aa1.53□□□□□ -2.16
NIC96YFR002W OST2P46964 130 aa1.53□□□□□ -2.16
NIC96YFR002W GON7P46984 123 aa1.53□□□□□ -2.16
NIC96YFR002W MOG1P47123 218 aa1.53□□□□□ -2.16
NIC96YFR002W COS6P53344 381 aa1.53□□□□□ -2.16
NIC96YFR002W MPD1Q12404 318 aaKnown RBP1.53□□□□□ -2.16
NIC96YFR002W ATP15P21306 62 aa1.52□□□□□ -2.17
NIC96YFR002W NUF2P33895 451 aa1.52□□□□□ -2.17
NIC96YFR002W SOK1P40317 901 aa1.52□□□□□ -2.17
NIC96YFR002W ARC15P40518 154 aaRIP-Chip data1.52□□□□□ -2.17not detected
NIC96YFR002W AKR2Q12013 749 aa1.52□□□□□ -2.17
NIC96YFR002W YPR096CO13587 100 aa1.52□□□□□ -2.17
NIC96YFR002W CKS1P20486 150 aaKnown RBP1.52□□□□□ -2.17
NIC96YFR002W MRPS28P21771 286 aa1.52□□□□□ -2.17
NIC96YFR002W BET1P22804 142 aa1.52□□□□□ -2.17
NIC96YFR002W OCH1P31755 480 aa1.52□□□□□ -2.17
NIC96YFR002W ECO1P43605 281 aa1.52□□□□□ -2.17
NIC96YFR002W PIR5P46999 287 aa1.52□□□□□ -2.17
NIC96YFR002W CIS3P47001 227 aa1.52□□□□□ -2.17
NIC96YFR002W YLR031WQ07978 186 aa1.52□□□□□ -2.17
NIC96YFR002W YLR046CQ12253 270 aa1.52□□□□□ -2.17
NIC96YFR002W YHR032W-AP0C5N6 59 aa1.51□□□□□ -2.17
NIC96YFR002W UBI4P0CG63 381 aaKnown RBP1.51□□□□□ -2.17
NIC96YFR002W CSH1P38287 376 aa1.51□□□□□ -2.17
NIC96YFR002W GAA1P39012 614 aa1.51□□□□□ -2.17
NIC96YFR002W AVT2P39981 480 aa1.51□□□□□ -2.17
NIC96YFR002W YER188WP40103 239 aa1.51□□□□□ -2.17
NIC96YFR002W SPG3Q04398 127 aaPredicted RBP1.51□□□□□ -2.17
Retrieved 100 of 5,963 RNA–protein pairs in 25.4 ms