RNA–Protein interactions for RNA: YBR160W

CDC28, Transcript of Cyclin-dependent kinase (CDK) catalytic subunit, yeast

Gene CDC28, Length 897 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC28	YBR160W	NAT5	Q08689	176 aa		4.16	□□□□□ -1.74
CDC28	YBR160W	USB1	Q12208	290 aa	Known RBP	4.16	□□□□□ -1.74
CDC28	YBR160W	YNL162W-A	Q3E7A8	72 aa		4.16	□□□□□ -1.74
CDC28	YBR160W	YHR214C-E	Q8TGK0	99 aa		4.16	□□□□□ -1.74
CDC28	YBR160W	HTB1	P02293	131 aa	Known RBP	4.15	□□□□□ -1.75
CDC28	YBR160W	HTB2	P02294	131 aa		4.15	□□□□□ -1.75
CDC28	YBR160W	RPS14A	P06367	137 aa	Known RBP	4.15	□□□□□ -1.75
CDC28	YBR160W	YCR007C	P25354	239 aa		4.15	□□□□□ -1.75
CDC28	YBR160W	SUA7	P29055	345 aa	Predicted RBP	4.15	□□□□□ -1.75
CDC28	YBR160W	UTR5	P32630	166 aa		4.15	□□□□□ -1.75
CDC28	YBR160W	YBL059W	P34224	193 aa		4.15	□□□□□ -1.75
CDC28	YBR160W	PMU1	P36069	295 aa		4.15	□□□□□ -1.75
CDC28	YBR160W	DOG1	P38774	246 aa		4.15	□□□□□ -1.75
CDC28	YBR160W	PFS1	P38872	237 aa		4.15	□□□□□ -1.75
CDC28	YBR160W	YHR210C	P38893	341 aa		4.15	□□□□□ -1.75
CDC28	YBR160W	RPS14B	P39516	138 aa	Known RBP	4.15	□□□□□ -1.75
CDC28	YBR160W	CYB5	P40312	120 aa		4.15	□□□□□ -1.75
CDC28	YBR160W	CFD1	P40558	293 aa		4.15	□□□□□ -1.75
CDC28	YBR160W	PCP1	P53259	346 aa		4.15	□□□□□ -1.75
CDC28	YBR160W	IZH1	Q03419	316 aa		4.15	□□□□□ -1.75
CDC28	YBR160W	YDR102C	Q03864	110 aa		4.15	□□□□□ -1.75
CDC28	YBR160W	SHH3	Q04487	196 aa		4.15	□□□□□ -1.75
CDC28	YBR160W	CNL1	Q06333	122 aa		4.15	□□□□□ -1.75
CDC28	YBR160W	MCH1	Q07376	486 aa		4.15	□□□□□ -1.75
CDC28	YBR160W	RFU1	Q08003	200 aa		4.15	□□□□□ -1.75
CDC28	YBR160W	YAL064W-B	O13512	126 aa		4.14	□□□□□ -1.75
CDC28	YBR160W	YGL010W	P25338	174 aa		4.14	□□□□□ -1.75
CDC28	YBR160W	QDR3	P38227	689 aa		4.14	□□□□□ -1.75
CDC28	YBR160W	AME1	P38313	324 aa		4.14	□□□□□ -1.75
CDC28	YBR160W	YMR262W	P38430	313 aa		4.14	□□□□□ -1.75
CDC28	YBR160W	RTC3	P38804	111 aa	Predicted RBP	4.14	□□□□□ -1.75
CDC28	YBR160W	BAT1	P38891	393 aa	Known RBP	4.14	□□□□□ -1.75
CDC28	YBR160W	YIL169C	P40442	995 aa		4.14	□□□□□ -1.75
CDC28	YBR160W	YIL086C	P40503	102 aa		4.14	□□□□□ -1.75
CDC28	YBR160W	SNO3	P43544	222 aa		4.14	□□□□□ -1.75
CDC28	YBR160W	RPA43	P46669	326 aa		4.14	□□□□□ -1.75
CDC28	YBR160W	HIT1	P46973	164 aa		4.14	□□□□□ -1.75
CDC28	YBR160W	XPT1	P47165	209 aa		4.14	□□□□□ -1.75
CDC28	YBR160W	YGR050C	P53231	118 aa		4.14	□□□□□ -1.75
CDC28	YBR160W	CRH1	P53301	507 aa		4.14	□□□□□ -1.75
CDC28	YBR160W	DUG3	P53871	357 aa		4.14	□□□□□ -1.75
CDC28	YBR160W	YPL039W	Q03080	316 aa		4.14	□□□□□ -1.75
CDC28	YBR160W	YMR166C	Q03829	368 aa		4.14	□□□□□ -1.75
CDC28	YBR160W	TSA2	Q04120	196 aa		4.14	□□□□□ -1.75
CDC28	YBR160W	YML053C	Q04978	212 aa		4.14	□□□□□ -1.75
CDC28	YBR160W	PRP11	Q07350	266 aa	Predicted RBP	4.14	□□□□□ -1.75
CDC28	YBR160W	YOR105W	Q08504	108 aa		4.14	□□□□□ -1.75
CDC28	YBR160W	RDL2	Q08742	149 aa	Known RBP	4.14	□□□□□ -1.75
CDC28	YBR160W	YOR292C	Q08743	309 aa		4.14	□□□□□ -1.75
CDC28	YBR160W	TPT1	Q12272	230 aa	Known RBP	4.14	□□□□□ -1.75
CDC28	YBR160W	FRE7	Q12333	620 aa		4.14	□□□□□ -1.75
CDC28	YBR160W	RPS22B	Q3E7Y3	130 aa	Known RBP	4.14	□□□□□ -1.75
CDC28	YBR160W	COX1	P00401	534 aa		4.13	□□□□□ -1.75
CDC28	YBR160W	COX5B	P00425	151 aa		4.13	□□□□□ -1.75
CDC28	YBR160W	PRE1	P22141	198 aa	Known RBP	4.13	□□□□□ -1.75
CDC28	YBR160W	PCL1	P24867	279 aa		4.13	□□□□□ -1.75
CDC28	YBR160W	RNA15	P25299	296 aa	Predicted RBP	4.13	□□□□□ -1.75
CDC28	YBR160W	IMG1	P25626	169 aa		4.13	□□□□□ -1.75
CDC28	YBR160W	DAD2	P36162	133 aa		4.13	□□□□□ -1.75
CDC28	YBR160W	SRP14	P38985	146 aa		4.13	□□□□□ -1.75
CDC28	YBR160W	COX16	P47081	118 aa		4.13	□□□□□ -1.75
CDC28	YBR160W	GEP7	P53171	287 aa		4.13	□□□□□ -1.75
CDC28	YBR160W	SWS2	P53937	143 aa		4.13	□□□□□ -1.75
CDC28	YBR160W	YDR366C	P87287	132 aa		4.13	□□□□□ -1.75
CDC28	YBR160W	YPL067C	Q02754	198 aa		4.13	□□□□□ -1.75
CDC28	YBR160W	YPL077C	Q02831	240 aa		4.13	□□□□□ -1.75
CDC28	YBR160W	NAT3	Q06504	195 aa		4.13	□□□□□ -1.75
CDC28	YBR160W	HRD1	Q08109	551 aa		4.13	□□□□□ -1.75
CDC28	YBR160W	YDL157C	Q12082	118 aa		4.13	□□□□□ -1.75
CDC28	YBR160W	DFR1	P07807	211 aa	Known RBP RIP-Chip data	4.12	□□□□□ -1.75	not detected
CDC28	YBR160W	YPR170W-B	P0C5R9	85 aa		4.12	□□□□□ -1.75
CDC28	YBR160W	FCY2	P17064	533 aa		4.12	□□□□□ -1.75
CDC28	YBR160W	MTR2	P34232	184 aa	Known RBP	4.12	□□□□□ -1.75
CDC28	YBR160W	SWD3	P38123	315 aa		4.12	□□□□□ -1.75
CDC28	YBR160W	YPT10	P38146	199 aa		4.12	□□□□□ -1.75
CDC28	YBR160W	POP7	P38291	140 aa		4.12	□□□□□ -1.75
CDC28	YBR160W	NTC20	P38302	140 aa	Predicted RBP	4.12	□□□□□ -1.75
CDC28	YBR160W	YER134C	P40081	178 aa		4.12	□□□□□ -1.75
CDC28	YBR160W	YER188W	P40103	239 aa		4.12	□□□□□ -1.75
CDC28	YBR160W	TIF34	P40217	347 aa	Known RBP	4.12	□□□□□ -1.75
CDC28	YBR160W	CIN5	P40917	295 aa		4.12	□□□□□ -1.75
CDC28	YBR160W	MSY1	P48527	492 aa		4.12	□□□□□ -1.75
CDC28	YBR160W	BOR1	P53838	576 aa		4.12	□□□□□ -1.75
CDC28	YBR160W	YMR007W	Q03675	126 aa		4.12	□□□□□ -1.75
CDC28	YBR160W	YMR254C	Q04838	102 aa		4.12	□□□□□ -1.75
CDC28	YBR160W	LOA1	Q06508	300 aa		4.12	□□□□□ -1.75
CDC28	YBR160W	YOL024W	Q08172	172 aa		4.12	□□□□□ -1.75
CDC28	YBR160W	YPS3	Q12303	508 aa		4.12	□□□□□ -1.75
CDC28	YBR160W	SMT3	Q12306	101 aa	Known RBP	4.12	□□□□□ -1.75
CDC28	YBR160W	BOL1	Q3E793	110 aa		4.12	□□□□□ -1.75
CDC28	YBR160W	CYR1	P08678	2026 aa	Known RBP	4.11	□□□□□ -1.75
CDC28	YBR160W	YER190C-B	P0CX94	160 aa		4.11	□□□□□ -1.75
CDC28	YBR160W	YEL077W-A	P0CX95	160 aa		4.11	□□□□□ -1.75
CDC28	YBR160W	YGR296C-B	P0CX96	160 aa		4.11	□□□□□ -1.75
CDC28	YBR160W	YPL283W-B	P0CX97	160 aa		4.11	□□□□□ -1.75
CDC28	YBR160W	YPR204C-A	P0CX98	160 aa		4.11	□□□□□ -1.75
CDC28	YBR160W	HMRA1	P0CY11	126 aa		4.11	□□□□□ -1.75
CDC28	YBR160W	SAG1	P20840	650 aa		4.11	□□□□□ -1.75
CDC28	YBR160W	MIG1	P27705	504 aa		4.11	□□□□□ -1.75
CDC28	YBR160W	AIM29	P36154	155 aa		4.11	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 13.9 ms