RNA–Protein interactions for RNA: YER029C

SMB1, Transcript of Core Sm protein Sm B, yeast

Gene SMB1, Length 591 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SMB1	YER029C	AIM2	P39721	246 aa		0.84	□□□□□ -2.27
SMB1	YER029C	YER034W	P40022	185 aa	Known RBP	0.84	□□□□□ -2.27
SMB1	YER029C	RIO2	P40160	425 aa	Known RBP	0.84	□□□□□ -2.27
SMB1	YER029C	SKI6	P46948	246 aa	Predicted RBP	0.84	□□□□□ -2.27
SMB1	YER029C	YJR111C	P47148	283 aa	Known RBP	0.84	□□□□□ -2.27
SMB1	YER029C	CGR1	P53188	120 aa		0.84	□□□□□ -2.27
SMB1	YER029C	YPR174C	Q06616	221 aa	Predicted RBP	0.84	□□□□□ -2.27
SMB1	YER029C	RIF1	P29539	1916 aa		0.83	□□□□□ -2.28
SMB1	YER029C	YAR023C	D6VPM8	179 aa		0.83	□□□□□ -2.28
SMB1	YER029C	APA2	P22108	325 aa		0.83	□□□□□ -2.28
SMB1	YER029C	YEL067C	P39978	195 aa		0.83	□□□□□ -2.28
SMB1	YER029C	YAE1	P47118	141 aa	Predicted RBP	0.83	□□□□□ -2.28
SMB1	YER029C	ARO8	P53090	500 aa	Known RBP	0.83	□□□□□ -2.28
SMB1	YER029C	YNL184C	P53876	108 aa		0.83	□□□□□ -2.28
SMB1	YER029C	YHR007C-A	Q07074	71 aa		0.83	□□□□□ -2.28
SMB1	YER029C	IRC23	Q08416	157 aa		0.83	□□□□□ -2.28
SMB1	YER029C	YML100W-A	Q8TGT0	57 aa		0.83	□□□□□ -2.28
SMB1	YER029C	MDM35	O60200	86 aa		0.82	□□□□□ -2.28
SMB1	YER029C	YPK2	P18961	677 aa		0.82	□□□□□ -2.28
SMB1	YER029C	YHL018W	P38744	120 aa	Predicted RBP	0.82	□□□□□ -2.28
SMB1	YER029C	YER134C	P40081	178 aa		0.82	□□□□□ -2.28
SMB1	YER029C	YNL247W	P53852	767 aa	Known RBP	0.82	□□□□□ -2.28
SMB1	YER029C	YMR295C	Q03559	197 aa		0.82	□□□□□ -2.28
SMB1	YER029C	GRX3	Q03835	250 aa		0.82	□□□□□ -2.28
SMB1	YER029C	DYN3	Q04949	312 aa		0.82	□□□□□ -2.28
SMB1	YER029C	JIP3	O13555	125 aa		0.81	□□□□□ -2.28
SMB1	YER029C	MTW1	P39731	289 aa		0.81	□□□□□ -2.28
SMB1	YER029C	FLX1	P40464	311 aa		0.81	□□□□□ -2.28
SMB1	YER029C	RPL37A	P49166	88 aa	Known RBP	0.81	□□□□□ -2.28
SMB1	YER029C	UBC12	P52491	188 aa		0.81	□□□□□ -2.28
SMB1	YER029C	RCE1	Q03530	315 aa		0.81	□□□□□ -2.28
SMB1	YER029C	ARO80	Q04052	950 aa		0.81	□□□□□ -2.28
SMB1	YER029C	RNH202	Q05635	350 aa		0.81	□□□□□ -2.28
SMB1	YER029C	NAT3	Q06504	195 aa		0.81	□□□□□ -2.28
SMB1	YER029C	PRP11	Q07350	266 aa	Predicted RBP	0.81	□□□□□ -2.28
SMB1	YER029C	FIT2	Q08906	153 aa		0.81	□□□□□ -2.28
SMB1	YER029C	COX8	P04039	78 aa		0.8	□□□□□ -2.28
SMB1	YER029C	SNF4	P12904	322 aa		0.8	□□□□□ -2.28
SMB1	YER029C	NSP1	P14907	823 aa	Known RBP	0.8	□□□□□ -2.28
SMB1	YER029C	MGT1	P26188	188 aa		0.8	□□□□□ -2.28
SMB1	YER029C	ADE1	P27616	306 aa		0.8	□□□□□ -2.28
SMB1	YER029C	PAM17	P36147	197 aa		0.8	□□□□□ -2.28
SMB1	YER029C	FMP23	P38231	175 aa		0.8	□□□□□ -2.28
SMB1	YER029C	PDS1	P40316	373 aa	Predicted RBP	0.8	□□□□□ -2.28
SMB1	YER029C	HYR1	P40581	163 aa	Known RBP	0.8	□□□□□ -2.28
SMB1	YER029C	YFL065C	P43539	102 aa		0.8	□□□□□ -2.28
SMB1	YER029C	RTC4	P53850	401 aa		0.8	□□□□□ -2.28
SMB1	YER029C	YLR031W	Q07978	186 aa		0.8	□□□□□ -2.28
SMB1	YER029C	YLR036C	Q07986	203 aa		0.8	□□□□□ -2.28
SMB1	YER029C	YOL024W	Q08172	172 aa		0.8	□□□□□ -2.28
SMB1	YER029C	YER188C-A	P0C0V2	99 aa		0.79	□□□□□ -2.28
SMB1	YER029C	YHR212W-A	P0CX91	67 aa		0.79	□□□□□ -2.28
SMB1	YER029C	PHO85	P17157	305 aa		0.79	□□□□□ -2.28
SMB1	YER029C	TRX3	P25372	127 aa		0.79	□□□□□ -2.28
SMB1	YER029C	YCL042W	P25572	119 aa		0.79	□□□□□ -2.28
SMB1	YER029C	TAH1	P25638	111 aa	Predicted RBP	0.79	□□□□□ -2.28
SMB1	YER029C	ECM4	P36156	370 aa		0.79	□□□□□ -2.28
SMB1	YER029C	EDC3	P39998	551 aa	Known RBP	0.79	□□□□□ -2.28
SMB1	YER029C	CUP9	P41817	306 aa		0.79	□□□□□ -2.28
SMB1	YER029C	YFL019C	P43576	117 aa		0.79	□□□□□ -2.28
SMB1	YER029C	YFH7	P43591	353 aa		0.79	□□□□□ -2.28
SMB1	YER029C	YNL033W	P53964	284 aa		0.79	□□□□□ -2.28
SMB1	YER029C	CWC27	Q02770	301 aa		0.79	□□□□□ -2.28
SMB1	YER029C	DIG2	Q03373	323 aa	Known RBP	0.79	□□□□□ -2.28
SMB1	YER029C	SHH3	Q04487	196 aa		0.79	□□□□□ -2.28
SMB1	YER029C	YMR253C	Q04835	414 aa		0.79	□□□□□ -2.28
SMB1	YER029C	NOC4	Q06512	552 aa	Predicted RBP	0.79	□□□□□ -2.28
SMB1	YER029C	YPR013C	Q12145	317 aa		0.79	□□□□□ -2.28
SMB1	YER029C	TIR1	P10863	254 aa		0.78	□□□□□ -2.28
SMB1	YER029C	YEL008W	P40001	126 aa		0.78	□□□□□ -2.28
SMB1	YER029C	SOK1	P40317	901 aa		0.78	□□□□□ -2.28
SMB1	YER029C	GPI14	P47088	403 aa	Known RBP	0.78	□□□□□ -2.28
SMB1	YER029C	TDA4	P47153	279 aa		0.78	□□□□□ -2.28
SMB1	YER029C	DAD4	P69851	72 aa		0.78	□□□□□ -2.28
SMB1	YER029C	YMR252C	Q04814	134 aa		0.78	□□□□□ -2.28
SMB1	YER029C	BRX1	Q08235	291 aa	Known RBP	0.78	□□□□□ -2.28
SMB1	YER029C	HFA1	P32874	2273 aa		0.78	□□□□□ -2.28
SMB1	YER029C	CAF4	P36130	643 aa		0.77	□□□□□ -2.29
SMB1	YER029C	YHL042W	P38729	150 aa		0.77	□□□□□ -2.29
SMB1	YER029C	SPC25	P40014	221 aa		0.77	□□□□□ -2.29
SMB1	YER029C	THG1	P53215	237 aa	Known RBP	0.77	□□□□□ -2.29
SMB1	YER029C	VPS71	Q03433	280 aa		0.77	□□□□□ -2.29
SMB1	YER029C	GRX8	Q05926	109 aa		0.77	□□□□□ -2.29
SMB1	YER029C	FYV12	Q08559	129 aa		0.77	□□□□□ -2.29
SMB1	YER029C	IDP1	P21954	428 aa	Known RBP	0.76	□□□□□ -2.29
SMB1	YER029C	ARO7	P32178	256 aa		0.76	□□□□□ -2.29
SMB1	YER029C	GSP2	P32836	220 aa	Known RBP	0.76	□□□□□ -2.29
SMB1	YER029C	RPB7	P34087	171 aa		0.76	□□□□□ -2.29
SMB1	YER029C	HPA3	P39979	161 aa		0.76	□□□□□ -2.29
SMB1	YER029C	HUA1	P40325	198 aa		0.76	□□□□□ -2.29
SMB1	YER029C	TMA22	P47089	198 aa	Predicted RBP	0.76	□□□□□ -2.29
SMB1	YER029C	AIM34	Q03673	198 aa		0.76	□□□□□ -2.29
SMB1	YER029C	YMR315W	Q04869	349 aa	Known RBP	0.76	□□□□□ -2.29
SMB1	YER029C	YOR342C	Q12182	319 aa		0.76	□□□□□ -2.29
SMB1	YER029C	SFK1	P35735	353 aa		0.75	□□□□□ -2.29
SMB1	YER029C	NSG1	P38837	291 aa		0.75	□□□□□ -2.29
SMB1	YER029C	SBH1	P52870	82 aa		0.75	□□□□□ -2.29
SMB1	YER029C	HOP2	P53187	214 aa		0.75	□□□□□ -2.29
SMB1	YER029C	PGA1	P53896	198 aa		0.75	□□□□□ -2.29
SMB1	YER029C	NRK1	P53915	240 aa		0.75	□□□□□ -2.29

Retrieved 100 of 5,963 RNA–protein pairs in 40.6 ms