RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W TMA19P35691 167 aaKnown RBP0.83□□□□□ -2.28
CDC39YCR093W SER33P40510 469 aa0.83□□□□□ -2.28
CDC39YCR093W CUP9P41817 306 aa0.83□□□□□ -2.28
CDC39YCR093W HNT1Q04344 158 aaKnown RBP0.83□□□□□ -2.28
CDC39YCR093W FEX1Q08913 375 aa0.83□□□□□ -2.28
CDC39YCR093W FEX2Q08991 375 aa0.83□□□□□ -2.28
CDC39YCR093W YAL063C-AQ3E791 96 aa0.83□□□□□ -2.28
CDC39YCR093W CDC28P00546 298 aaKnown RBP0.83□□□□□ -2.28
CDC39YCR093W OAC1P32332 324 aa0.83□□□□□ -2.28
CDC39YCR093W RPT5P33297 434 aaKnown RBP0.83□□□□□ -2.28
CDC39YCR093W IKI1P38874 309 aa0.83□□□□□ -2.28
CDC39YCR093W YNL217WP40152 326 aa0.83□□□□□ -2.28
CDC39YCR093W YPL247CQ12523 523 aa0.83□□□□□ -2.28
CDC39YCR093W YOL085CQ99345 113 aa0.83□□□□□ -2.28
CDC39YCR093W GCN1P33892 2672 aaKnown RBP0.83□□□□□ -2.28
CDC39YCR093W RAD10P06838 210 aa0.83□□□□□ -2.28
CDC39YCR093W ATG15P25641 520 aa0.83□□□□□ -2.28
CDC39YCR093W RPF1P38805 295 aaKnown RBP0.83□□□□□ -2.28
CDC39YCR093W GVP36P40531 326 aaKnown RBP0.83□□□□□ -2.28
CDC39YCR093W AIM25P47140 327 aa0.83□□□□□ -2.28
CDC39YCR093W SSU72P53538 206 aaPredicted RBP0.83□□□□□ -2.28
CDC39YCR093W TIM11P81449 96 aaPredicted RBP0.83□□□□□ -2.28
CDC39YCR093W YPR011CQ12251 326 aa0.83□□□□□ -2.28
CDC39YCR093W MOT1P32333 1867 aa0.83□□□□□ -2.28
CDC39YCR093W PET9P18239 318 aaKnown RBP0.83□□□□□ -2.28
CDC39YCR093W MTW1P39731 289 aa0.83□□□□□ -2.28
CDC39YCR093W EDC3P39998 551 aaKnown RBP0.83□□□□□ -2.28
CDC39YCR093W OST3P48439 350 aa0.83□□□□□ -2.28
CDC39YCR093W YPL039WQ03080 316 aa0.83□□□□□ -2.28
CDC39YCR093W YHR032W-AP0C5N6 59 aa0.83□□□□□ -2.28
CDC39YCR093W SVP26P38869 228 aa0.83□□□□□ -2.28
CDC39YCR093W YLR053CQ12026 108 aa0.83□□□□□ -2.28
CDC39YCR093W SGA1P08019 549 aa0.82□□□□□ -2.28
CDC39YCR093W YKL075CP36083 450 aa0.82□□□□□ -2.28
CDC39YCR093W YEA4P40004 342 aa0.82□□□□□ -2.28
CDC39YCR093W MGA1P53050 456 aa0.82□□□□□ -2.28
CDC39YCR093W MDM34P53083 459 aa0.82□□□□□ -2.28
CDC39YCR093W MZM1Q03429 123 aaPredicted RBP0.82□□□□□ -2.28
CDC39YCR093W VPS71Q03433 280 aa0.82□□□□□ -2.28
CDC39YCR093W PEX11Q12462 236 aa0.82□□□□□ -2.28
CDC39YCR093W CMC2Q3E7A4 109 aa0.82□□□□□ -2.28
CDC39YCR093W PEX17P40155 199 aa0.82□□□□□ -2.28
CDC39YCR093W GLR1P41921 483 aaKnown RBP0.82□□□□□ -2.28
CDC39YCR093W NOP13P53883 403 aaKnown RBP RIP-Chip data0.82□□□□□ -2.28not detected
CDC39YCR093W CBT1P36038 271 aaPredicted RBP0.82□□□□□ -2.28
CDC39YCR093W ECM13P38195 257 aa0.82□□□□□ -2.28
CDC39YCR093W YER034WP40022 185 aaKnown RBP0.82□□□□□ -2.28
CDC39YCR093W TIR3P40552 269 aa0.82□□□□□ -2.28
CDC39YCR093W ACT1P60010 375 aaKnown RBP0.82□□□□□ -2.28
CDC39YCR093W MET31Q03081 177 aa0.82□□□□□ -2.28
CDC39YCR093W GPI17Q04080 534 aa0.82□□□□□ -2.28
CDC39YCR093W LPP1Q04396 274 aa0.82□□□□□ -2.28
CDC39YCR093W YHR007C-AQ07074 71 aa0.82□□□□□ -2.28
CDC39YCR093W YLR412C-AQ3E742 68 aa0.82□□□□□ -2.28
CDC39YCR093W CDC8P00572 216 aa0.82□□□□□ -2.28
CDC39YCR093W RPC19P28000 142 aaKnown RBP0.82□□□□□ -2.28
CDC39YCR093W FZF1P32805 299 aa0.82□□□□□ -2.28
CDC39YCR093W TVP23P38962 199 aa0.82□□□□□ -2.28
CDC39YCR093W YER135CP40082 130 aa0.82□□□□□ -2.28
CDC39YCR093W YKE4P40544 346 aa0.82□□□□□ -2.28
CDC39YCR093W COQ10Q08058 207 aa0.82□□□□□ -2.28
CDC39YCR093W DGK1Q12382 290 aa0.82□□□□□ -2.28
CDC39YCR093W NOT5Q12514 560 aaPredicted RBP0.82□□□□□ -2.28
CDC39YCR093W TDA8Q6B2U8 126 aa0.82□□□□□ -2.28
CDC39YCR093W SFK1P35735 353 aa0.82□□□□□ -2.28
CDC39YCR093W YNL194CP40169 301 aa0.82□□□□□ -2.28
CDC39YCR093W BMT5P40493 336 aa0.82□□□□□ -2.28
CDC39YCR093W AIM34Q03673 198 aa0.82□□□□□ -2.28
CDC39YCR093W RDS3Q06835 107 aaPredicted RBP0.82□□□□□ -2.28
CDC39YCR093W NIP7Q08962 181 aaKnown RBP0.82□□□□□ -2.28
CDC39YCR093W ADE6P38972 1358 aaKnown RBP0.81□□□□□ -2.28
CDC39YCR093W RPS23AP0CX29 145 aaKnown RBP0.81□□□□□ -2.28
CDC39YCR093W RPS23BP0CX30 145 aa0.81□□□□□ -2.28
CDC39YCR093W MATALPHA1P0CY06 175 aa0.81□□□□□ -2.28
CDC39YCR093W HMLALPHA1P0CY07 175 aa0.81□□□□□ -2.28
CDC39YCR093W RPB9P27999 122 aa0.81□□□□□ -2.28
CDC39YCR093W MEI4P29467 408 aa0.81□□□□□ -2.28
CDC39YCR093W PTC1P35182 281 aa0.81□□□□□ -2.28
CDC39YCR093W ECM33P38248 429 aaKnown RBP0.81□□□□□ -2.28
CDC39YCR093W PHO88P38264 188 aaPredicted RBP0.81□□□□□ -2.28
CDC39YCR093W YHR022CP38763 256 aa0.81□□□□□ -2.28
CDC39YCR093W SRP14P38985 146 aa0.81□□□□□ -2.28
CDC39YCR093W MOB1P40484 314 aa0.81□□□□□ -2.28
CDC39YCR093W ICE2P40499 491 aa0.81□□□□□ -2.28
CDC39YCR093W ERJ5P43613 295 aaPredicted RBP0.81□□□□□ -2.28
CDC39YCR093W SBH2P52871 88 aa0.81□□□□□ -2.28
CDC39YCR093W SLM2P53955 656 aa0.81□□□□□ -2.28
CDC39YCR093W BRX1Q08235 291 aaKnown RBP0.81□□□□□ -2.28
CDC39YCR093W DGA1Q08650 418 aa0.81□□□□□ -2.28
CDC39YCR093W YOR376WQ08900 122 aa0.81□□□□□ -2.28
CDC39YCR093W GIS3Q12418 502 aa0.81□□□□□ -2.28
CDC39YCR093W ADF1Q2V2Q1 113 aa0.81□□□□□ -2.28
CDC39YCR093W YPR117WQ06116 2489 aa0.81□□□□□ -2.28
CDC39YCR093W YHR139C-AO13536 103 aa0.81□□□□□ -2.28
CDC39YCR093W RPS5P26783 225 aaKnown RBP0.81□□□□□ -2.28
CDC39YCR093W GRE3P38715 327 aaKnown RBP RIP-Chip data0.81□□□□□ -2.28not detected
CDC39YCR093W APJ1P53940 528 aa0.81□□□□□ -2.28
CDC39YCR093W YNL046WP53956 172 aa0.81□□□□□ -2.28
CDC39YCR093W YMR166CQ03829 368 aa0.81□□□□□ -2.28
CDC39YCR093W YAR023CD6VPM8 179 aa0.81□□□□□ -2.28
Retrieved 100 of 5,963 RNA–protein pairs in 91.4 ms