RNA–Protein interactions for RNA: YBR160W

CDC28, Transcript of Cyclin-dependent kinase (CDK) catalytic subunit, yeast

Gene CDC28, Length 897 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC28	YBR160W	EKI1	Q03764	534 aa		4.25	□□□□□ -1.73
CDC28	YBR160W	MCH4	Q08268	501 aa		4.25	□□□□□ -1.73
CDC28	YBR160W	PAU20	Q08322	120 aa		4.25	□□□□□ -1.73
CDC28	YBR160W	YPL272C	Q08984	517 aa		4.25	□□□□□ -1.73
CDC28	YBR160W	ATG5	Q12380	294 aa		4.25	□□□□□ -1.73
CDC28	YBR160W	PAA1	Q12447	191 aa	Known RBP	4.25	□□□□□ -1.73
CDC28	YBR160W	YOR343C	Q12484	108 aa		4.25	□□□□□ -1.73
CDC28	YBR160W	PAU9	Q3E770	120 aa		4.25	□□□□□ -1.73
CDC28	YBR160W	YMR084W	A2P2R3	262 aa		4.24	□□□□□ -1.73
CDC28	YBR160W	CET1	O13297	549 aa	Predicted RBP	4.24	□□□□□ -1.73
CDC28	YBR160W	RIP1	P08067	215 aa		4.24	□□□□□ -1.73
CDC28	YBR160W	SPT15	P13393	240 aa	Known RBP	4.24	□□□□□ -1.73
CDC28	YBR160W	MDH2	P22133	377 aa		4.24	□□□□□ -1.73
CDC28	YBR160W	AIM17	P23180	465 aa	Known RBP	4.24	□□□□□ -1.73
CDC28	YBR160W	AFG1	P32317	509 aa		4.24	□□□□□ -1.73
CDC28	YBR160W	ARC40	P38328	384 aa	Known RBP	4.24	□□□□□ -1.73
CDC28	YBR160W	UIP3	P39547	235 aa		4.24	□□□□□ -1.73
CDC28	YBR160W	MOB1	P40484	314 aa		4.24	□□□□□ -1.73
CDC28	YBR160W	ZIM17	P42844	174 aa		4.24	□□□□□ -1.73
CDC28	YBR160W	ATG27	P46989	271 aa		4.24	□□□□□ -1.73
CDC28	YBR160W	YJR011C	P47086	261 aa	Predicted RBP	4.24	□□□□□ -1.73
CDC28	YBR160W	MSO1	P53604	210 aa	Known RBP	4.24	□□□□□ -1.73
CDC28	YBR160W	RSM23	Q01163	450 aa		4.24	□□□□□ -1.73
CDC28	YBR160W	SKO1	Q02100	647 aa		4.24	□□□□□ -1.73
CDC28	YBR160W	YLR179C	Q06252	201 aa	Known RBP	4.24	□□□□□ -1.73
CDC28	YBR160W	YLR030W	Q07967	263 aa		4.24	□□□□□ -1.73
CDC28	YBR160W	MIM1	Q08176	113 aa		4.24	□□□□□ -1.73
CDC28	YBR160W	PRR2	Q12310	699 aa		4.24	□□□□□ -1.73
CDC28	YBR160W	ERP4	Q12450	207 aa		4.24	□□□□□ -1.73
CDC28	YBR160W	AGC1	Q12482	902 aa		4.24	□□□□□ -1.73
CDC28	YBR160W	COA2	Q3E823	68 aa		4.24	□□□□□ -1.73
CDC28	YBR160W	NAG1	Q8TGN9	163 aa		4.24	□□□□□ -1.73
CDC28	YBR160W	TDH3	P00359	332 aa	Known RBP RIP-Chip data	4.23	□□□□□ -1.73	not detected
CDC28	YBR160W	MSW1	P04803	379 aa		4.23	□□□□□ -1.73
CDC28	YBR160W	BGL2	P15703	313 aa	Known RBP	4.23	□□□□□ -1.73
CDC28	YBR160W	AHT1	P29589	182 aa		4.23	□□□□□ -1.73
CDC28	YBR160W	ERG2	P32352	222 aa		4.23	□□□□□ -1.73
CDC28	YBR160W	MRPL11	P36521	249 aa	Predicted RBP	4.23	□□□□□ -1.73
CDC28	YBR160W	OM14	P38325	134 aa		4.23	□□□□□ -1.73
CDC28	YBR160W	YHR180W	P38868	163 aa		4.23	□□□□□ -1.73
CDC28	YBR160W	FLO5	P38894	1075 aa		4.23	□□□□□ -1.73
CDC28	YBR160W	LYS1	P38998	373 aa	RIP-Chip data	4.23	□□□□□ -1.73	not detected
CDC28	YBR160W	RPA34	P47006	233 aa	Predicted RBP	4.23	□□□□□ -1.73
CDC28	YBR160W	YJR012C	P47087	207 aa		4.23	□□□□□ -1.73
CDC28	YBR160W	YGR149W	P48236	432 aa		4.23	□□□□□ -1.73
CDC28	YBR160W	YMR090W	Q04304	227 aa	Known RBP	4.23	□□□□□ -1.73
CDC28	YBR160W	PAL1	Q05518	499 aa	Known RBP	4.23	□□□□□ -1.73
CDC28	YBR160W	YPR174C	Q06616	221 aa	Predicted RBP	4.23	□□□□□ -1.73
CDC28	YBR160W	YDL242W	Q07746	117 aa		4.23	□□□□□ -1.73
CDC28	YBR160W	IRC19	Q07843	230 aa		4.23	□□□□□ -1.73
CDC28	YBR160W	YOL029C	Q08187	201 aa		4.23	□□□□□ -1.73
CDC28	YBR160W	FCY22	Q12119	530 aa		4.23	□□□□□ -1.73
CDC28	YBR160W	YLR365W	Q7LIF2	110 aa		4.23	□□□□□ -1.73
CDC28	YBR160W	YER175W-A	Q8TGU4	54 aa		4.23	□□□□□ -1.73
CDC28	YBR160W	MRS4	P23500	304 aa		4.22	□□□□□ -1.73
CDC28	YBR160W	YCR025C	P25352	136 aa		4.22	□□□□□ -1.73
CDC28	YBR160W	URK1	P27515	501 aa		4.22	□□□□□ -1.73
CDC28	YBR160W	PEX4	P29340	183 aa		4.22	□□□□□ -1.73
CDC28	YBR160W	YKL102C	P34249	101 aa		4.22	□□□□□ -1.73
CDC28	YBR160W	UPS2	P35200	230 aa		4.22	□□□□□ -1.73
CDC28	YBR160W	YKL075C	P36083	450 aa		4.22	□□□□□ -1.73
CDC28	YBR160W	RPL14A	P36105	138 aa	Known RBP	4.22	□□□□□ -1.73
CDC28	YBR160W	RPL14B	P38754	138 aa	Known RBP	4.22	□□□□□ -1.73
CDC28	YBR160W	PAC2	P39937	518 aa		4.22	□□□□□ -1.73
CDC28	YBR160W	GAT2	P40209	560 aa		4.22	□□□□□ -1.73
CDC28	YBR160W	GLC8	P41818	229 aa		4.22	□□□□□ -1.73
CDC28	YBR160W	COQ5	P49017	307 aa		4.22	□□□□□ -1.73
CDC28	YBR160W	BRR6	P53062	197 aa		4.22	□□□□□ -1.73
CDC28	YBR160W	SAE3	P89114	91 aa		4.22	□□□□□ -1.73
CDC28	YBR160W	APS2	Q00381	147 aa		4.22	□□□□□ -1.73
CDC28	YBR160W	YML122C	Q03207	126 aa		4.22	□□□□□ -1.73
CDC28	YBR160W	TRS23	Q03784	219 aa		4.22	□□□□□ -1.73
CDC28	YBR160W	YDR286C	Q05530	114 aa		4.22	□□□□□ -1.73
CDC28	YBR160W	YPR147C	Q06522	304 aa	Known RBP	4.22	□□□□□ -1.73
CDC28	YBR160W	SWT1	Q12104	458 aa		4.22	□□□□□ -1.73
CDC28	YBR160W	FRE8	Q12209	686 aa		4.22	□□□□□ -1.73
CDC28	YBR160W	ERV2	Q12284	196 aa		4.22	□□□□□ -1.73
CDC28	YBR160W	SME1	Q12330	94 aa	Predicted RBP	4.22	□□□□□ -1.73
CDC28	YBR160W	YIL002W-A	Q3E7Z5	69 aa		4.22	□□□□□ -1.73
CDC28	YBR160W	YPR014C	Q6B0W2	109 aa		4.22	□□□□□ -1.73
CDC28	YBR160W	FLO9	P39712	1322 aa		4.21	□□□□□ -1.73
CDC28	YBR160W	SCO1	P23833	295 aa		4.21	□□□□□ -1.74
CDC28	YBR160W	KRR1	P25586	316 aa	Predicted RBP	4.21	□□□□□ -1.74
CDC28	YBR160W	COQ3	P27680	312 aa		4.21	□□□□□ -1.74
CDC28	YBR160W	ERV1	P27882	189 aa		4.21	□□□□□ -1.74
CDC28	YBR160W	OCH1	P31755	480 aa		4.21	□□□□□ -1.74
CDC28	YBR160W	GLC7	P32598	312 aa	Known RBP	4.21	□□□□□ -1.74
CDC28	YBR160W	SWD2	P36104	329 aa	Predicted RBP	4.21	□□□□□ -1.74
CDC28	YBR160W	SHB17	P36136	271 aa	Known RBP	4.21	□□□□□ -1.74
CDC28	YBR160W	MED6	P38782	295 aa		4.21	□□□□□ -1.74
CDC28	YBR160W	YFR054C	P43622	192 aa		4.21	□□□□□ -1.74
CDC28	YBR160W	RIB4	P50861	169 aa	Predicted RBP	4.21	□□□□□ -1.74
CDC28	YBR160W	MRPL19	P53875	158 aa		4.21	□□□□□ -1.74
CDC28	YBR160W	YLR460C	P54007	376 aa		4.21	□□□□□ -1.74
CDC28	YBR160W	HHT1	P61830	136 aa		4.21	□□□□□ -1.74
CDC28	YBR160W	TVP18	Q04767	167 aa		4.21	□□□□□ -1.74
CDC28	YBR160W	COQ11	Q05892	277 aa		4.21	□□□□□ -1.74
CDC28	YBR160W	STP3	Q05937	343 aa		4.21	□□□□□ -1.74
CDC28	YBR160W	CTS2	Q06350	511 aa		4.21	□□□□□ -1.74
CDC28	YBR160W	HNT3	Q08702	217 aa		4.21	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 106.1 ms