RNA–Protein interactions for RNA: YOR098C

NUP1, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP1, Length 3,231 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP1	YOR098C	GIR2	Q03768	265 aa	Predicted RBP	6.72	□□□□□ -1.33
NUP1	YOR098C	ITC1	P53125	1264 aa		6.72	□□□□□ -1.33
NUP1	YOR098C	TRS120	Q04183	1289 aa		6.71	□□□□□ -1.33
NUP1	YOR098C	LSO1	Q3E827	93 aa		6.71	□□□□□ -1.33
NUP1	YOR098C	SLX5	P32828	619 aa	Known RBP	6.71	□□□□□ -1.34
NUP1	YOR098C	VPS24	P36095	224 aa	Known RBP	6.71	□□□□□ -1.34
NUP1	YOR098C	CWC24	P53769	259 aa		6.71	□□□□□ -1.34
NUP1	YOR098C	FOL1	P53848	824 aa		6.71	□□□□□ -1.34
NUP1	YOR098C	RAD2	P07276	1031 aa		6.71	□□□□□ -1.34
NUP1	YOR098C	TRX2	P22803	104 aa	Known RBP	6.71	□□□□□ -1.34
NUP1	YOR098C	GAS4	Q08271	471 aa		6.71	□□□□□ -1.34
NUP1	YOR098C	THS1	P04801	734 aa	Known RBP	6.7	□□□□□ -1.34
NUP1	YOR098C	PWP2	P25635	923 aa	Known RBP	6.7	□□□□□ -1.34
NUP1	YOR098C	CRP1	P38845	465 aa	Known RBP	6.7	□□□□□ -1.34
NUP1	YOR098C	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	6.7	□□□□□ -1.34	not detected
NUP1	YOR098C	CEF1	Q03654	590 aa	Predicted RBP	6.7	□□□□□ -1.34
NUP1	YOR098C	PHO8	P11491	566 aa		6.7	□□□□□ -1.34
NUP1	YOR098C	NKP1	Q12493	238 aa		6.7	□□□□□ -1.34
NUP1	YOR098C	YNL115C	P53925	644 aa		6.69	□□□□□ -1.34
NUP1	YOR098C	SAM3	Q08986	587 aa		6.69	□□□□□ -1.34
NUP1	YOR098C	TFB4	Q12004	338 aa		6.69	□□□□□ -1.34
NUP1	YOR098C	SRM1	P21827	482 aa		6.69	□□□□□ -1.34
NUP1	YOR098C	PET112	P33893	541 aa		6.69	□□□□□ -1.34
NUP1	YOR098C	COG4	Q06096	861 aa		6.69	□□□□□ -1.34
NUP1	YOR098C	GYP5	Q12344	894 aa		6.69	□□□□□ -1.34
NUP1	YOR098C	RAD27	P26793	382 aa		6.69	□□□□□ -1.34
NUP1	YOR098C	TUM1	Q08686	304 aa	Known RBP	6.69	□□□□□ -1.34
NUP1	YOR098C	SPT2	P06843	333 aa	Predicted RBP	6.68	□□□□□ -1.34
NUP1	YOR098C	TOA1	P32773	286 aa		6.68	□□□□□ -1.34
NUP1	YOR098C	SLI15	P38283	698 aa		6.68	□□□□□ -1.34
NUP1	YOR098C	RAD4	P14736	754 aa		6.68	□□□□□ -1.34
NUP1	YOR098C	SUV3	P32580	737 aa		6.68	□□□□□ -1.34
NUP1	YOR098C	SOH1	P38633	127 aa		6.68	□□□□□ -1.34
NUP1	YOR098C	CDC73	Q06697	393 aa		6.68	□□□□□ -1.34
NUP1	YOR098C	PDI1	P17967	522 aa	Known RBP	6.67	□□□□□ -1.34
NUP1	YOR098C	UBP10	P53874	792 aa	Predicted RBP	6.67	□□□□□ -1.34
NUP1	YOR098C	FOX2	Q02207	900 aa	Known RBP	6.67	□□□□□ -1.34
NUP1	YOR098C	TSC13	Q99190	310 aa		6.67	□□□□□ -1.34
NUP1	YOR098C	CYC8	P14922	966 aa		6.67	□□□□□ -1.34
NUP1	YOR098C	MNR2	P35724	969 aa		6.67	□□□□□ -1.34
NUP1	YOR098C	NOC2	P39744	710 aa	Known RBP	6.67	□□□□□ -1.34
NUP1	YOR098C	PEX8	P53248	589 aa		6.67	□□□□□ -1.34
NUP1	YOR098C	FRA1	Q07825	749 aa		6.67	□□□□□ -1.34
NUP1	YOR098C	MPH3	P0CE00	602 aa		6.67	□□□□□ -1.34
NUP1	YOR098C	VAN1	P23642	535 aa		6.67	□□□□□ -1.34
NUP1	YOR098C	POL5	P39985	1022 aa	Known RBP	6.67	□□□□□ -1.34
NUP1	YOR098C	RPT2	P40327	437 aa	Known RBP	6.67	□□□□□ -1.34
NUP1	YOR098C	VPS27	P40343	622 aa	Known RBP	6.67	□□□□□ -1.34
NUP1	YOR098C	PUS6	P53294	404 aa		6.67	□□□□□ -1.34
NUP1	YOR098C	SPR3	P41901	512 aa		6.66	□□□□□ -1.34
NUP1	YOR098C	AI4	P03878	556 aa		6.66	□□□□□ -1.34
NUP1	YOR098C	TIM54	P47045	478 aa		6.66	□□□□□ -1.34
NUP1	YOR098C	TOS4	Q06266	489 aa		6.66	□□□□□ -1.34
NUP1	YOR098C	APL6	P46682	809 aa		6.65	□□□□□ -1.34
NUP1	YOR098C	YOR378W	Q08902	515 aa		6.65	□□□□□ -1.34
NUP1	YOR098C	BUD31	P25337	157 aa	Predicted RBP	6.65	□□□□□ -1.34
NUP1	YOR098C	MRC1	P25588	1096 aa		6.65	□□□□□ -1.34
NUP1	YOR098C	PAF1	P38351	445 aa		6.65	□□□□□ -1.34
NUP1	YOR098C	TUB4	P53378	473 aa		6.65	□□□□□ -1.34
NUP1	YOR098C	YHR020W	P38708	688 aa	Known RBP	6.65	□□□□□ -1.35
NUP1	YOR098C	YGR122W	P53272	402 aa		6.65	□□□□□ -1.35
NUP1	YOR098C	YLR125W	Q12138	136 aa		6.65	□□□□□ -1.35
NUP1	YOR098C	ATG3	P40344	310 aa		6.64	□□□□□ -1.35
NUP1	YOR098C	TRS33	Q99394	268 aa		6.64	□□□□□ -1.35
NUP1	YOR098C	CHD1	P32657	1468 aa		6.64	□□□□□ -1.35
NUP1	YOR098C	PRI2	P20457	528 aa		6.64	□□□□□ -1.35
NUP1	YOR098C	THI4	P32318	326 aa		6.64	□□□□□ -1.35
NUP1	YOR098C	FAA4	P47912	694 aa	Known RBP	6.64	□□□□□ -1.35
NUP1	YOR098C	ENT2	Q05785	613 aa		6.64	□□□□□ -1.35
NUP1	YOR098C	HIF1	Q12373	385 aa		6.64	□□□□□ -1.35
NUP1	YOR098C	NOP14	Q99207	810 aa	Known RBP	6.64	□□□□□ -1.35
NUP1	YOR098C	RPP1B	P10622	106 aa	Known RBP	6.63	□□□□□ -1.35
NUP1	YOR098C	CDC11	P32458	415 aa		6.63	□□□□□ -1.35
NUP1	YOR098C	DCW1	P36091	449 aa		6.63	□□□□□ -1.35
NUP1	YOR098C	YNR029C	P53729	429 aa	Known RBP	6.63	□□□□□ -1.35
NUP1	YOR098C	GDE1	Q02979	1223 aa		6.63	□□□□□ -1.35
NUP1	YOR098C	STE20	Q03497	939 aa	Known RBP	6.63	□□□□□ -1.35
NUP1	YOR098C	YPR084W	Q06821	456 aa		6.63	□□□□□ -1.35
NUP1	YOR098C	GCD6	P32501	712 aa	Known RBP	6.63	□□□□□ -1.35
NUP1	YOR098C	PEX21	P50091	288 aa		6.63	□□□□□ -1.35
NUP1	YOR098C	ERR1	P0CX10	437 aa		6.62	□□□□□ -1.35
NUP1	YOR098C	ERR2	P0CX11	437 aa		6.62	□□□□□ -1.35
NUP1	YOR098C	RPB10	P22139	70 aa		6.62	□□□□□ -1.35
NUP1	YOR098C	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	6.62	□□□□□ -1.35	not detected
NUP1	YOR098C	UTP13	Q05946	817 aa	Known RBP	6.62	□□□□□ -1.35
NUP1	YOR098C	ADR1	P07248	1323 aa		6.62	□□□□□ -1.35
NUP1	YOR098C	NAN1	Q02931	896 aa	Known RBP	6.62	□□□□□ -1.35
NUP1	YOR098C	TDA5	Q06417	326 aa	Known RBP	6.62	□□□□□ -1.35
NUP1	YOR098C	ERF2	Q06551	359 aa		6.62	□□□□□ -1.35
NUP1	YOR098C	TEC1	P18412	486 aa		6.61	□□□□□ -1.35
NUP1	YOR098C	YAP5	P40574	245 aa		6.61	□□□□□ -1.35
NUP1	YOR098C	CHZ1	P40019	153 aa	Predicted RBP	6.61	□□□□□ -1.35
NUP1	YOR098C	SPO20	Q04359	397 aa		6.61	□□□□□ -1.35
NUP1	YOR098C	YRR1	Q12172	810 aa		6.61	□□□□□ -1.35
NUP1	YOR098C	SPF1	P39986	1215 aa	Known RBP	6.61	□□□□□ -1.35
NUP1	YOR098C	FIG4	P42837	879 aa		6.61	□□□□□ -1.35
NUP1	YOR098C	TBF1	Q02457	562 aa		6.61	□□□□□ -1.35
NUP1	YOR098C	KEX2	P13134	814 aa		6.6	□□□□□ -1.35
NUP1	YOR098C	GUT2	P32191	649 aa		6.6	□□□□□ -1.35
NUP1	YOR098C	YKL069W	P36088	180 aa		6.6	□□□□□ -1.35

Retrieved 100 of 5,963 RNA–protein pairs in 42.5 ms