RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeastyeast

Gene RRP40, Length 723 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RRP40YOL142W NOB1Q08444 459 aaKnown RBP8.56□□□□□ -1.04
RRP40YOL142W SUM1P46676 1062 aa8.54□□□□□ -1.04
RRP40YOL142W ROM1P53046 1155 aa8.54□□□□□ -1.04
RRP40YOL142W YML083CQ04526 418 aa8.54□□□□□ -1.04
RRP40YOL142W GAS4Q08271 471 aa8.54□□□□□ -1.04
RRP40YOL142W TCB1Q12466 1186 aa8.54□□□□□ -1.04
RRP40YOL142W MON2P48563 1636 aaPredicted RBP8.54□□□□□ -1.04
RRP40YOL142W GLY1P37303 387 aaKnown RBP8.52□□□□□ -1.05
RRP40YOL142W UBX7P38349 436 aa8.52□□□□□ -1.05
RRP40YOL142W CYT1P07143 309 aa8.51□□□□□ -1.05
RRP40YOL142W SSN3P39073 555 aa8.51□□□□□ -1.05
RRP40YOL142W UBP2Q01476 1272 aa8.51□□□□□ -1.05
RRP40YOL142W VTC4P47075 721 aa8.5□□□□□ -1.05
RRP40YOL142W YPQ2Q06328 317 aa8.5□□□□□ -1.05
RRP40YOL142W GAR1P28007 205 aaKnown RBP8.49□□□□□ -1.05
RRP40YOL142W DAL1P32375 460 aa8.49□□□□□ -1.05
RRP40YOL142W MSN5P52918 1224 aa8.49□□□□□ -1.05
RRP40YOL142W SCW11P53189 542 aa8.48□□□□□ -1.05
RRP40YOL142W UBP1P25037 809 aa8.47□□□□□ -1.05
RRP40YOL142W ALA1P40825 983 aaKnown RBP8.47□□□□□ -1.05
RRP40YOL142W TY1A-BLQ12266 440 aa8.47□□□□□ -1.05
RRP40YOL142W VAN1P23642 535 aa8.45□□□□□ -1.06
RRP40YOL142W MCM1P11746 286 aa8.44□□□□□ -1.06
RRP40YOL142W SLA1P32790 1244 aa8.44□□□□□ -1.06
RRP40YOL142W AHP1P38013 176 aaKnown RBP8.43□□□□□ -1.06
RRP40YOL142W OSH7P38755 437 aa8.43□□□□□ -1.06
RRP40YOL142W JJJ2P46997 583 aa8.43□□□□□ -1.06
RRP40YOL142W TY1A-DR3Q12441 440 aa8.43□□□□□ -1.06
RRP40YOL142W CDC19P00549 500 aaKnown RBP8.42□□□□□ -1.06
RRP40YOL142W SSA1P10591 642 aaKnown RBP8.42□□□□□ -1.06
RRP40YOL142W TRS33Q99394 268 aa8.42□□□□□ -1.06
RRP40YOL142W NGR1P32831 672 aaKnown RBP8.41□□□□□ -1.06
RRP40YOL142W SHM1P37292 490 aaPredicted RBP8.41□□□□□ -1.06
RRP40YOL142W PUF6Q04373 656 aaKnown RBP8.41□□□□□ -1.06
RRP40YOL142W GBP2P25555 427 aaKnown RBP RIP-Chip data8.4□□□□□ -1.06not detected
RRP40YOL142W ACO2P39533 789 aa8.4□□□□□ -1.06
RRP40YOL142W IRE1P32361 1115 aa8.39□□□□□ -1.07
RRP40YOL142W SUV3P32580 737 aa8.39□□□□□ -1.07
RRP40YOL142W CAF120P53836 1060 aa8.39□□□□□ -1.07
RRP40YOL142W YNL165WP53891 406 aa8.38□□□□□ -1.07
RRP40YOL142W YDL176WQ12027 708 aa8.38□□□□□ -1.07
RRP40YOL142W UBP15P50101 1230 aa8.37□□□□□ -1.07
RRP40YOL142W CWH41P53008 833 aa8.37□□□□□ -1.07
RRP40YOL142W RPL34AP87262 121 aaPredicted RBP8.37□□□□□ -1.07
RRP40YOL142W CWC15Q03772 175 aaKnown RBP8.37□□□□□ -1.07
RRP40YOL142W RPS31P05759 152 aaKnown RBP8.36□□□□□ -1.07
RRP40YOL142W YIR007WP40566 764 aa8.36□□□□□ -1.07
RRP40YOL142W ROG3P43602 733 aa8.36□□□□□ -1.07
RRP40YOL142W NAM8Q00539 523 aaKnown RBP8.36□□□□□ -1.07
RRP40YOL142W PUN1Q06991 263 aa8.36□□□□□ -1.07
RRP40YOL142W TY1A-MR1Q04215 440 aa8.35□□□□□ -1.07
RRP40YOL142W GEF1P37020 779 aa8.34□□□□□ -1.07
RRP40YOL142W HXT5P38695 592 aa8.34□□□□□ -1.07
RRP40YOL142W Q0182Q9ZZW1 134 aa8.34□□□□□ -1.07
RRP40YOL142W TY1B-DR4Q07793 1604 aa8.33□□□□□ -1.08
RRP40YOL142W SRS2P12954 1174 aa8.33□□□□□ -1.08
RRP40YOL142W PDC6P26263 563 aaKnown RBP8.33□□□□□ -1.08
RRP40YOL142W MLF3P32047 452 aa8.33□□□□□ -1.08
RRP40YOL142W TPS3P38426 1054 aaKnown RBP8.33□□□□□ -1.08
RRP40YOL142W ALD4P46367 519 aaKnown RBP8.33□□□□□ -1.08
RRP40YOL142W PSH1Q12161 406 aa8.33□□□□□ -1.08
RRP40YOL142W INO80P53115 1489 aa8.32□□□□□ -1.08
RRP40YOL142W SCD5P34758 872 aa8.32□□□□□ -1.08
RRP40YOL142W CAB1Q04430 367 aa8.32□□□□□ -1.08
RRP40YOL142W CCP1P00431 361 aa8.3□□□□□ -1.08
RRP40YOL142W YTA6P40328 754 aa8.3□□□□□ -1.08
RRP40YOL142W PNP1Q05788 311 aa8.3□□□□□ -1.08
RRP40YOL142W YBR197CP38306 217 aa8.29□□□□□ -1.08
RRP40YOL142W RGA1P39083 1007 aa8.29□□□□□ -1.08
RRP40YOL142W FOX2Q02207 900 aaKnown RBP8.29□□□□□ -1.08
RRP40YOL142W UTP4Q06679 776 aaKnown RBP8.29□□□□□ -1.08
RRP40YOL142W LEU1P07264 779 aaKnown RBP8.28□□□□□ -1.08
RRP40YOL142W TCB3Q03640 1545 aaKnown RBP8.28□□□□□ -1.08
RRP40YOL142W ALD2P47771 506 aa8.27□□□□□ -1.09
RRP40YOL142W CUZ1P53899 274 aa8.27□□□□□ -1.09
RRP40YOL142W YPL062WQ02781 134 aa8.26□□□□□ -1.09
RRP40YOL142W SGS1P35187 1447 aa8.26□□□□□ -1.09
RRP40YOL142W ISC10P32645 267 aa8.25□□□□□ -1.09
RRP40YOL142W MRPL33P20084 86 aa8.24□□□□□ -1.09
RRP40YOL142W DIT1P21623 536 aa8.24□□□□□ -1.09
RRP40YOL142W CDC3P32457 520 aaKnown RBP8.24□□□□□ -1.09
RRP40YOL142W MRPL16P38064 232 aa8.23□□□□□ -1.09
RRP40YOL142W YMR265CQ03508 461 aaKnown RBP8.23□□□□□ -1.09
RRP40YOL142W STB3Q12427 513 aa8.23□□□□□ -1.09
RRP40YOL142W RRN6P32786 894 aa8.22□□□□□ -1.09
RRP40YOL142W MTO1P53070 669 aa8.22□□□□□ -1.09
RRP40YOL142W RGP1P16664 663 aa8.21□□□□□ -1.1
RRP40YOL142W VMA3P25515 160 aa8.21□□□□□ -1.1
RRP40YOL142W KAP122P32767 1081 aa8.21□□□□□ -1.1
RRP40YOL142W BOL3P39724 118 aa8.21□□□□□ -1.1
RRP40YOL142W FUR4P05316 633 aaKnown RBP8.2□□□□□ -1.1
RRP40YOL142W QDR2P40474 542 aa8.2□□□□□ -1.1
RRP40YOL142W KRE33P53914 1056 aaKnown RBP8.2□□□□□ -1.1
RRP40YOL142W KAR5Q04746 504 aa8.2□□□□□ -1.1
RRP40YOL142W SWR1Q05471 1514 aa8.19□□□□□ -1.1
RRP40YOL142W BOI1P38041 980 aaKnown RBP8.19□□□□□ -1.1
RRP40YOL142W SPR3P41901 512 aa8.19□□□□□ -1.1
RRP40YOL142W HPF1Q05164 967 aa8.19□□□□□ -1.1
RRP40YOL142W CEM1P39525 442 aa8.18□□□□□ -1.1
RRP40YOL142W LSO1Q3E827 93 aa8.18□□□□□ -1.1
Retrieved 100 of 5,963 RNA–protein pairs in 7.3 ms