RNA–Protein interactions for RNA: YKR053C

YSR3, Transcript of Dihydrosphingosine 1-phosphate phosphatase, yeastyeast

Gene YSR3, Length 1,215 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
YSR3YKR053C ICL1P28240 557 aaPredicted RBP12.71□□□□□ -0.37
YSR3YKR053C SHC1P39000 512 aa12.71□□□□□ -0.37
YSR3YKR053C YKU70P32807 602 aa12.7□□□□□ -0.38
YSR3YKR053C RPN1P38764 993 aaKnown RBP12.7□□□□□ -0.38
YSR3YKR053C TOP1P04786 769 aa12.69□□□□□ -0.38
YSR3YKR053C SUI2P20459 304 aaKnown RBP12.69□□□□□ -0.38
YSR3YKR053C VPS27P40343 622 aaKnown RBP12.69□□□□□ -0.38
YSR3YKR053C SAS4Q04003 481 aa12.69□□□□□ -0.38
YSR3YKR053C MRP7P12687 371 aa12.68□□□□□ -0.38
YSR3YKR053C FRD1P32614 470 aaKnown RBP12.68□□□□□ -0.38
YSR3YKR053C NUP133P36161 1157 aa12.67□□□□□ -0.38
YSR3YKR053C SET1P38827 1080 aaKnown RBP12.66□□□□□ -0.38
YSR3YKR053C FCP1Q03254 732 aa12.66□□□□□ -0.38
YSR3YKR053C ATG20Q07528 640 aa12.66□□□□□ -0.38
YSR3YKR053C PEX21P50091 288 aa12.65□□□□□ -0.38
YSR3YKR053C SLI15P38283 698 aa12.64□□□□□ -0.39
YSR3YKR053C CDC45Q08032 650 aa12.64□□□□□ -0.39
YSR3YKR053C DIP2Q12220 943 aaPredicted RBP12.63□□□□□ -0.39
YSR3YKR053C SAC3P46674 1301 aa12.62□□□□□ -0.39
YSR3YKR053C SSA4P22202 642 aaKnown RBP12.62□□□□□ -0.39
YSR3YKR053C RET1P22276 1149 aaKnown RBP12.61□□□□□ -0.39
YSR3YKR053C ITC1P53125 1264 aa12.61□□□□□ -0.39
YSR3YKR053C PUS5Q06244 254 aa12.61□□□□□ -0.39
YSR3YKR053C MAK21Q12176 1025 aaKnown RBP12.6□□□□□ -0.39
YSR3YKR053C DPH6Q12429 685 aa12.6□□□□□ -0.39
YSR3YKR053C RTG2P32608 588 aaKnown RBP12.59□□□□□ -0.39
YSR3YKR053C MTC5Q03897 1148 aa12.59□□□□□ -0.39
YSR3YKR053C DPL1Q05567 589 aa12.59□□□□□ -0.39
YSR3YKR053C YPP1P46951 817 aa12.58□□□□□ -0.4
YSR3YKR053C YRB30P53107 440 aaPredicted RBP12.58□□□□□ -0.4
YSR3YKR053C YGR122WP53272 402 aa12.58□□□□□ -0.4
YSR3YKR053C UBX2Q04228 584 aa12.58□□□□□ -0.4
YSR3YKR053C NOP8Q08287 484 aaPredicted RBP12.58□□□□□ -0.4
YSR3YKR053C YLR278CQ05854 1341 aa12.58□□□□□ -0.4
YSR3YKR053C THS1P04801 734 aaKnown RBP12.57□□□□□ -0.4
YSR3YKR053C NSR1P27476 414 aaKnown RBP RIP-Chip data12.57□□□□□ -0.4not detected
YSR3YKR053C KRE2P27809 442 aa12.57□□□□□ -0.4
YSR3YKR053C ICP55P40051 511 aa12.57□□□□□ -0.4
YSR3YKR053C PSH1Q12161 406 aa12.57□□□□□ -0.4
YSR3YKR053C MSM1P22438 575 aa12.56□□□□□ -0.4
YSR3YKR053C RAD24P32641 659 aa12.56□□□□□ -0.4
YSR3YKR053C RVB2Q12464 471 aaKnown RBP12.55□□□□□ -0.4
YSR3YKR053C TRP5P00931 707 aaKnown RBP12.54□□□□□ -0.4
YSR3YKR053C SUP35P05453 685 aaKnown RBP12.54□□□□□ -0.4
YSR3YKR053C SWC3P31376 625 aa12.54□□□□□ -0.4
YSR3YKR053C UBP12P39538 1254 aa12.54□□□□□ -0.4
YSR3YKR053C TIF4632P39936 914 aaKnown RBP12.54□□□□□ -0.4
YSR3YKR053C SET4P42948 560 aa12.54□□□□□ -0.4
YSR3YKR053C PMD1P32634 1753 aa12.53□□□□□ -0.4
YSR3YKR053C BOI2P39969 1040 aa12.53□□□□□ -0.4
YSR3YKR053C NAB6Q03735 1134 aaKnown RBP RIP-Chip data12.53□□□□□ -0.4not detected
YSR3YKR053C RPS19AP07280 144 aaKnown RBP12.51□□□□□ -0.41
YSR3YKR053C RPS19BP07281 144 aaPredicted RBP12.51□□□□□ -0.41
YSR3YKR053C GLC3P32775 704 aa12.51□□□□□ -0.41
YSR3YKR053C CSI1Q04368 295 aa12.51□□□□□ -0.41
YSR3YKR053C THI3Q07471 609 aa12.51□□□□□ -0.41
YSR3YKR053C MGM1P32266 881 aa12.5□□□□□ -0.41
YSR3YKR053C NGR1P32831 672 aaKnown RBP12.5□□□□□ -0.41
YSR3YKR053C SPL2P38839 148 aa12.5□□□□□ -0.41
YSR3YKR053C RRD1P40454 393 aaKnown RBP12.5□□□□□ -0.41
YSR3YKR053C FET4P40988 552 aa12.5□□□□□ -0.41
YSR3YKR053C TIM50Q02776 476 aa12.5□□□□□ -0.41
YSR3YKR053C RPT4P53549 437 aaKnown RBP12.49□□□□□ -0.41
YSR3YKR053C RRG1Q12167 365 aaPredicted RBP12.49□□□□□ -0.41
YSR3YKR053C GAS5Q08193 484 aa12.48□□□□□ -0.41
YSR3YKR053C GAP1P19145 602 aaPredicted RBP12.47□□□□□ -0.41
YSR3YKR053C YIL092WP40497 633 aa12.47□□□□□ -0.41
YSR3YKR053C SRC1Q03707 834 aa12.47□□□□□ -0.41
YSR3YKR053C CRF1Q04930 467 aa12.47□□□□□ -0.41
YSR3YKR053C SNU66Q12420 587 aaPredicted RBP12.47□□□□□ -0.41
YSR3YKR053C HXT10P43581 546 aa12.46□□□□□ -0.41
YSR3YKR053C AFG2P32794 780 aa12.45□□□□□ -0.42
YSR3YKR053C NUG1P40010 520 aaKnown RBP12.45□□□□□ -0.42
YSR3YKR053C VHR2P40041 505 aa12.45□□□□□ -0.42
YSR3YKR053C YGR117CP53270 476 aa12.45□□□□□ -0.42
YSR3YKR053C TRM44Q02648 567 aaKnown RBP12.45□□□□□ -0.42
YSR3YKR053C ADR1P07248 1323 aa12.44□□□□□ -0.42
YSR3YKR053C DAL5P15365 543 aa12.43□□□□□ -0.42
YSR3YKR053C EMP47P43555 445 aa12.43□□□□□ -0.42
YSR3YKR053C PRP42Q03776 544 aaKnown RBP12.43□□□□□ -0.42
YSR3YKR053C AIM7Q12156 149 aa12.43□□□□□ -0.42
YSR3YKR053C RAD2P07276 1031 aa12.42□□□□□ -0.42
YSR3YKR053C PRS1P32895 427 aaKnown RBP12.42□□□□□ -0.42
YSR3YKR053C VPS4P52917 437 aa12.42□□□□□ -0.42
YSR3YKR053C IRC4Q03036 179 aa12.42□□□□□ -0.42
YSR3YKR053C PSF3Q12146 194 aa12.42□□□□□ -0.42
YSR3YKR053C FIG2P25653 1609 aa12.41□□□□□ -0.42
YSR3YKR053C LCB1P25045 558 aaKnown RBP12.41□□□□□ -0.42
YSR3YKR053C POM152P39685 1337 aa12.4□□□□□ -0.42
YSR3YKR053C STV1P37296 890 aa12.4□□□□□ -0.42
YSR3YKR053C PEA2P40091 420 aa12.4□□□□□ -0.42
YSR3YKR053C GSM1P42950 618 aa12.4□□□□□ -0.42
YSR3YKR053C HGH1P48362 394 aaKnown RBP12.4□□□□□ -0.42
YSR3YKR053C HPR1P17629 752 aaKnown RBP12.39□□□□□ -0.43
YSR3YKR053C SSF1P38789 453 aaPredicted RBP12.39□□□□□ -0.43
YSR3YKR053C FLO11P08640 1367 aa12.39□□□□□ -0.43
YSR3YKR053C ARG82P07250 355 aa12.38□□□□□ -0.43
YSR3YKR053C GCD7P32502 381 aaPredicted RBP12.38□□□□□ -0.43
YSR3YKR053C YNG2P38806 282 aaKnown RBP12.38□□□□□ -0.43
YSR3YKR053C YIL089WP40500 205 aa12.38□□□□□ -0.43
Retrieved 100 of 5,963 RNA–protein pairs in 32.4 ms