RNA–Protein interactions for RNA: YBR235W

VHC1, Transcript of Vacuolar membrane cation-chloride cotransporter (CCC), yeast

Gene VHC1, Length 3,363 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VHC1	YBR235W	STU1	P38198	1513 aa		5.2	□□□□□ -1.58
VHC1	YBR235W	ILV3	P39522	585 aa	Known RBP	5.2	□□□□□ -1.58
VHC1	YBR235W	RIO2	P40160	425 aa	Known RBP	5.2	□□□□□ -1.58
VHC1	YBR235W	CIR1	P42940	261 aa		5.2	□□□□□ -1.58
VHC1	YBR235W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	5.2	□□□□□ -1.58	not detected
VHC1	YBR235W	HST2	P53686	357 aa		5.2	□□□□□ -1.58
VHC1	YBR235W	ATG26	Q06321	1198 aa		5.2	□□□□□ -1.58
VHC1	YBR235W	CDC37	P06101	506 aa	Known RBP	5.2	□□□□□ -1.58
VHC1	YBR235W	SES1	P07284	462 aa	Known RBP	5.2	□□□□□ -1.58
VHC1	YBR235W	RME1	P32338	300 aa	Known RBP	5.2	□□□□□ -1.58
VHC1	YBR235W	BNI4	P53858	892 aa		5.2	□□□□□ -1.58
VHC1	YBR235W	SRC1	Q03707	834 aa		5.2	□□□□□ -1.58
VHC1	YBR235W	YDR341C	Q05506	607 aa	Known RBP	5.2	□□□□□ -1.58
VHC1	YBR235W	TSR2	Q06672	205 aa	Known RBP	5.2	□□□□□ -1.58
VHC1	YBR235W	SDH5	Q08230	162 aa		5.2	□□□□□ -1.58
VHC1	YBR235W	APC11	Q12157	165 aa		5.2	□□□□□ -1.58
VHC1	YBR235W	NUP157	P40064	1391 aa	Known RBP	5.19	□□□□□ -1.58
VHC1	YBR235W	HSP104	P31539	908 aa	Known RBP	5.19	□□□□□ -1.58
VHC1	YBR235W	IST1	P53843	298 aa	Predicted RBP	5.19	□□□□□ -1.58
VHC1	YBR235W	SFB2	P53953	876 aa		5.19	□□□□□ -1.58
VHC1	YBR235W	YPR097W	Q06839	1073 aa		5.19	□□□□□ -1.58
VHC1	YBR235W	PBY1	P38254	753 aa		5.19	□□□□□ -1.58
VHC1	YBR235W	RGD1	P38339	666 aa		5.19	□□□□□ -1.58
VHC1	YBR235W	NPA3	P47122	385 aa		5.19	□□□□□ -1.58
VHC1	YBR235W	YDR338C	Q05497	695 aa		5.19	□□□□□ -1.58
VHC1	YBR235W	ROM2	P51862	1356 aa	Known RBP	5.19	□□□□□ -1.58
VHC1	YBR235W	SEC6	P32844	805 aa		5.19	□□□□□ -1.58
VHC1	YBR235W	SMY2	P32909	740 aa	Known RBP	5.19	□□□□□ -1.58
VHC1	YBR235W	TIF3	P34167	436 aa	Known RBP	5.19	□□□□□ -1.58
VHC1	YBR235W	YLF2	P38746	405 aa		5.19	□□□□□ -1.58
VHC1	YBR235W	SHE4	P51534	789 aa		5.19	□□□□□ -1.58
VHC1	YBR235W	BTN2	P53286	410 aa		5.19	□□□□□ -1.58
VHC1	YBR235W	BET4	Q00618	327 aa		5.19	□□□□□ -1.58
VHC1	YBR235W	FAR1	P21268	830 aa		5.18	□□□□□ -1.58
VHC1	YBR235W	KAR9	P32526	644 aa		5.18	□□□□□ -1.58
VHC1	YBR235W	DSL1	P53847	754 aa		5.18	□□□□□ -1.58
VHC1	YBR235W	OSW7	P43611	510 aa		5.18	□□□□□ -1.58
VHC1	YBR235W	LCB5	Q06147	687 aa	Known RBP	5.18	□□□□□ -1.58
VHC1	YBR235W	NUP159	P40477	1460 aa		5.18	□□□□□ -1.58
VHC1	YBR235W	KOG1	P38873	1557 aa		5.18	□□□□□ -1.58
VHC1	YBR235W	IQG1	Q12280	1495 aa		5.18	□□□□□ -1.58
VHC1	YBR235W	SPE2	P21182	396 aa		5.18	□□□□□ -1.58
VHC1	YBR235W	CDC48	P25694	835 aa	Known RBP	5.18	□□□□□ -1.58
VHC1	YBR235W	DMA1	P38823	416 aa		5.18	□□□□□ -1.58
VHC1	YBR235W	IES2	P40154	320 aa		5.18	□□□□□ -1.58
VHC1	YBR235W	ATG3	P40344	310 aa		5.18	□□□□□ -1.58
VHC1	YBR235W	YIR042C	P40586	236 aa		5.18	□□□□□ -1.58
VHC1	YBR235W	YFR006W	P43590	535 aa		5.18	□□□□□ -1.58
VHC1	YBR235W	GDE1	Q02979	1223 aa		5.18	□□□□□ -1.58
VHC1	YBR235W	LAM6	Q08001	693 aa		5.18	□□□□□ -1.58
VHC1	YBR235W	BUD2	P33314	1104 aa		5.17	□□□□□ -1.58
VHC1	YBR235W	SEC5	P89102	971 aa		5.17	□□□□□ -1.58
VHC1	YBR235W	TSC11	P40061	1430 aa		5.17	□□□□□ -1.58
VHC1	YBR235W	GCN2	P15442	1659 aa		5.17	□□□□□ -1.58
VHC1	YBR235W	NPR3	P38742	1146 aa		5.17	□□□□□ -1.58
VHC1	YBR235W	SEC27	P41811	889 aa	Known RBP	5.17	□□□□□ -1.58
VHC1	YBR235W	ALD4	P46367	519 aa	Known RBP	5.17	□□□□□ -1.58
VHC1	YBR235W	BRE1	Q07457	700 aa	Known RBP	5.17	□□□□□ -1.58
VHC1	YBR235W	CMS1	Q07897	291 aa	Known RBP	5.17	□□□□□ -1.58
VHC1	YBR235W	SIP3	P38717	1229 aa		5.16	□□□□□ -1.58
VHC1	YBR235W	SDA1	P53313	767 aa	Known RBP	5.16	□□□□□ -1.58
VHC1	YBR235W	PDR5	P33302	1511 aa	Known RBP	5.16	□□□□□ -1.58
VHC1	YBR235W	SWI6	P09959	803 aa		5.16	□□□□□ -1.58
VHC1	YBR235W	MRPL10	P36520	322 aa		5.16	□□□□□ -1.58
VHC1	YBR235W	EFM2	P38347	419 aa		5.16	□□□□□ -1.58
VHC1	YBR235W	GGA2	P38817	585 aa	Known RBP	5.16	□□□□□ -1.58
VHC1	YBR235W	POL32	P47110	350 aa		5.16	□□□□□ -1.58
VHC1	YBR235W	REX2	P54964	269 aa	Known RBP	5.16	□□□□□ -1.58
VHC1	YBR235W	ADE12	P80210	433 aa	Known RBP	5.16	□□□□□ -1.58
VHC1	YBR235W	VPS20	Q04272	221 aa		5.16	□□□□□ -1.58
VHC1	YBR235W	YMR111C	Q04461	462 aa	Predicted RBP	5.16	□□□□□ -1.58
VHC1	YBR235W	PSK2	Q08217	1101 aa		5.16	□□□□□ -1.58
VHC1	YBR235W	HCA4	P20448	770 aa	Known RBP	5.16	□□□□□ -1.58
VHC1	YBR235W	MRPS28	P21771	286 aa		5.16	□□□□□ -1.58
VHC1	YBR235W	MRC1	P25588	1096 aa		5.16	□□□□□ -1.58
VHC1	YBR235W	ACP1	P32463	125 aa		5.16	□□□□□ -1.58
VHC1	YBR235W	CSE1	P33307	960 aa		5.16	□□□□□ -1.58
VHC1	YBR235W	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	5.16	□□□□□ -1.58	not detected
VHC1	YBR235W	CWH41	P53008	833 aa		5.16	□□□□□ -1.58
VHC1	YBR235W	SYH1	Q02875	849 aa	Known RBP	5.16	□□□□□ -1.58
VHC1	YBR235W	AVO1	Q08236	1176 aa		5.16	□□□□□ -1.58
VHC1	YBR235W	SLX4	Q12098	748 aa		5.16	□□□□□ -1.58
VHC1	YBR235W	BRR1	Q99177	341 aa	Predicted RBP	5.16	□□□□□ -1.58
VHC1	YBR235W	VPS35	P34110	944 aa		5.15	□□□□□ -1.58
VHC1	YBR235W	BRL1	P38770	471 aa		5.15	□□□□□ -1.58
VHC1	YBR235W	SHC1	P39000	512 aa		5.15	□□□□□ -1.58
VHC1	YBR235W	RRT14	P40470	206 aa		5.15	□□□□□ -1.58
VHC1	YBR235W	OCA1	P50946	238 aa	Predicted RBP	5.15	□□□□□ -1.58
VHC1	YBR235W	HEH2	Q03281	663 aa		5.15	□□□□□ -1.58
VHC1	YBR235W	MRD1	Q06106	887 aa	Known RBP	5.15	□□□□□ -1.58
VHC1	YBR235W	UGA3	P26370	528 aa		5.15	□□□□□ -1.59
VHC1	YBR235W	SWC3	P31376	625 aa		5.15	□□□□□ -1.59
VHC1	YBR235W	PET112	P33893	541 aa		5.15	□□□□□ -1.59
VHC1	YBR235W	ECM4	P36156	370 aa		5.15	□□□□□ -1.59
VHC1	YBR235W	CIC1	P38779	376 aa	Known RBP	5.15	□□□□□ -1.59
VHC1	YBR235W	PLP1	Q04004	230 aa		5.15	□□□□□ -1.59
VHC1	YBR235W	MMR1	Q06324	491 aa		5.15	□□□□□ -1.59
VHC1	YBR235W	CTK3	P46963	296 aa	Predicted RBP	5.15	□□□□□ -1.59
VHC1	YBR235W	YCF1	P39109	1515 aa	Known RBP	5.15	□□□□□ -1.59
VHC1	YBR235W	ESF2	P53743	316 aa	Known RBP	5.14	□□□□□ -1.59

Retrieved 100 of 5,963 RNA–protein pairs in 11.5 ms