RNA–Protein interactions for RNA: YBR175W

SWD3, Transcript of Essential subunit of the COMPASS (Set1C) complex, yeast

Gene SWD3, Length 948 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SWD3	YBR175W	MDJ1	P35191	511 aa		4.21	□□□□□ -1.74
SWD3	YBR175W	TTI1	P36097	1038 aa		4.21	□□□□□ -1.74
SWD3	YBR175W	PAM1	P37304	830 aa	Known RBP	4.21	□□□□□ -1.74
SWD3	YBR175W	SSF1	P38789	453 aa	Predicted RBP	4.21	□□□□□ -1.74
SWD3	YBR175W	MET10	P39692	1035 aa		4.21	□□□□□ -1.74
SWD3	YBR175W	LSB3	P43603	459 aa	Known RBP	4.2	□□□□□ -1.74
SWD3	YBR175W	APL6	P46682	809 aa		4.2	□□□□□ -1.74
SWD3	YBR175W	ATG20	Q07528	640 aa		4.2	□□□□□ -1.74
SWD3	YBR175W	NOB1	Q08444	459 aa	Known RBP	4.2	□□□□□ -1.74
SWD3	YBR175W	ENO2	P00925	437 aa	Known RBP	4.19	□□□□□ -1.74
SWD3	YBR175W	RRN6	P32786	894 aa		4.19	□□□□□ -1.74
SWD3	YBR175W	ATG3	P40344	310 aa		4.19	□□□□□ -1.74
SWD3	YBR175W	YFL066C	P43538	392 aa		4.19	□□□□□ -1.74
SWD3	YBR175W	EMP47	P43555	445 aa		4.19	□□□□□ -1.74
SWD3	YBR175W	RIM21	P48565	533 aa		4.19	□□□□□ -1.74
SWD3	YBR175W	YNL108C	P53929	270 aa		4.19	□□□□□ -1.74
SWD3	YBR175W	SEN54	Q02825	467 aa	Predicted RBP	4.19	□□□□□ -1.74
SWD3	YBR175W	RTG2	P32608	588 aa	Known RBP	4.18	□□□□□ -1.74
SWD3	YBR175W	CUZ1	P53899	274 aa		4.18	□□□□□ -1.74
SWD3	YBR175W	UTP13	Q05946	817 aa	Known RBP	4.18	□□□□□ -1.74
SWD3	YBR175W	HEM3	P28789	327 aa		4.17	□□□□□ -1.74
SWD3	YBR175W	RPP2B	P02400	110 aa	Known RBP	4.16	□□□□□ -1.74
SWD3	YBR175W	AI1	P03875	834 aa		4.16	□□□□□ -1.74
SWD3	YBR175W	ISF1	P32488	338 aa		4.16	□□□□□ -1.74
SWD3	YBR175W	YML083C	Q04526	418 aa		4.16	□□□□□ -1.74
SWD3	YBR175W	MRX10	Q05648	414 aa		4.16	□□□□□ -1.74
SWD3	YBR175W	HAT1	Q12341	374 aa		4.16	□□□□□ -1.74
SWD3	YBR175W	SLA1	P32790	1244 aa		4.15	□□□□□ -1.75
SWD3	YBR175W	SIS2	P36024	562 aa		4.15	□□□□□ -1.75
SWD3	YBR175W	SSN3	P39073	555 aa		4.15	□□□□□ -1.75
SWD3	YBR175W	CEM1	P39525	442 aa		4.15	□□□□□ -1.75
SWD3	YBR175W	DLD3	P39976	496 aa	Known RBP	4.15	□□□□□ -1.75
SWD3	YBR175W	NSG2	P53898	299 aa		4.15	□□□□□ -1.75
SWD3	YBR175W	THI72	Q08579	599 aa		4.15	□□□□□ -1.75
SWD3	YBR175W	YTA7	P40340	1379 aa		4.14	□□□□□ -1.75
SWD3	YBR175W	ENO1	P00924	437 aa	Known RBP	4.14	□□□□□ -1.75
SWD3	YBR175W	SPT2	P06843	333 aa	Predicted RBP	4.14	□□□□□ -1.75
SWD3	YBR175W	DIT1	P21623	536 aa		4.14	□□□□□ -1.75
SWD3	YBR175W	PUP1	P25043	261 aa		4.14	□□□□□ -1.75
SWD3	YBR175W	UBP15	P50101	1230 aa		4.14	□□□□□ -1.75
SWD3	YBR175W	MSN5	P52918	1224 aa		4.14	□□□□□ -1.75
SWD3	YBR175W	SYT1	Q06836	1226 aa		4.14	□□□□□ -1.75
SWD3	YBR175W	WTM2	Q12206	467 aa		4.14	□□□□□ -1.75
SWD3	YBR175W	RDS2	P19541	446 aa	Known RBP	4.13	□□□□□ -1.75
SWD3	YBR175W	CCT8	P47079	568 aa	Known RBP	4.13	□□□□□ -1.75
SWD3	YBR175W	ISR1	Q06098	443 aa	Known RBP	4.13	□□□□□ -1.75
SWD3	YBR175W	PEP12	P32854	288 aa		4.12	□□□□□ -1.75
SWD3	YBR175W	SOH1	P38633	127 aa		4.12	□□□□□ -1.75
SWD3	YBR175W	YMR265C	Q03508	461 aa	Known RBP	4.12	□□□□□ -1.75
SWD3	YBR175W	TY1A-DR3	Q12441	440 aa		4.12	□□□□□ -1.75
SWD3	YBR175W	YDR461C-A	Q2V2P7	80 aa		4.12	□□□□□ -1.75
SWD3	YBR175W	INO80	P53115	1489 aa		4.11	□□□□□ -1.75
SWD3	YBR175W	ASF1	P32447	279 aa		4.11	□□□□□ -1.75
SWD3	YBR175W	HAL5	P38970	855 aa	Known RBP	4.11	□□□□□ -1.75
SWD3	YBR175W	DAT1	P13483	248 aa	Known RBP	4.1	□□□□□ -1.75
SWD3	YBR175W	UTR2	P32623	467 aa		4.1	□□□□□ -1.75
SWD3	YBR175W	BRN1	P38170	754 aa		4.1	□□□□□ -1.75
SWD3	YBR175W	IPL1	P38991	367 aa		4.1	□□□□□ -1.75
SWD3	YBR175W	KRE33	P53914	1056 aa	Known RBP	4.1	□□□□□ -1.75
SWD3	YBR175W	OCA5	P38738	679 aa		4.09	□□□□□ -1.75
SWD3	YBR175W	STM1	P39015	273 aa	Known RBP	4.09	□□□□□ -1.75
SWD3	YBR175W	ADE12	P80210	433 aa	Known RBP	4.09	□□□□□ -1.75
SWD3	YBR175W	HDA3	Q06623	655 aa		4.09	□□□□□ -1.75
SWD3	YBR175W	SEC20	P28791	383 aa		4.08	□□□□□ -1.76
SWD3	YBR175W	TGL4	P36165	910 aa		4.08	□□□□□ -1.76
SWD3	YBR175W	TBS1	P38114	1094 aa		4.08	□□□□□ -1.76
SWD3	YBR175W	SKN7	P38889	622 aa		4.08	□□□□□ -1.76
SWD3	YBR175W	YFL034W	P43564	1073 aa		4.08	□□□□□ -1.76
SWD3	YBR175W	ALD2	P47771	506 aa		4.08	□□□□□ -1.76
SWD3	YBR175W	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	4.08	□□□□□ -1.76	not detected
SWD3	YBR175W	YBL113C	Q7M4S9	792 aa		4.08	□□□□□ -1.76
SWD3	YBR175W	SBE2	P42223	864 aa	Known RBP	4.07	□□□□□ -1.76
SWD3	YBR175W	YPR053C	Q6Q5F3	151 aa		4.07	□□□□□ -1.76
SWD3	YBR175W	SPC42	P36094	363 aa		4.06	□□□□□ -1.76
SWD3	YBR175W	AHP1	P38013	176 aa	Known RBP	4.06	□□□□□ -1.76
SWD3	YBR175W	AIM9	P40053	627 aa	Known RBP	4.06	□□□□□ -1.76
SWD3	YBR175W	UTP7	P40055	554 aa	Known RBP	4.06	□□□□□ -1.76
SWD3	YBR175W	SUM1	P46676	1062 aa		4.06	□□□□□ -1.76
SWD3	YBR175W	DOS2	P54858	310 aa		4.06	□□□□□ -1.76
SWD3	YBR175W	TDA6	Q06466	467 aa		4.06	□□□□□ -1.76
SWD3	YBR175W	TSC13	Q99190	310 aa		4.06	□□□□□ -1.76
SWD3	YBR175W	TOP1	P04786	769 aa		4.05	□□□□□ -1.76
SWD3	YBR175W	HAP4	P14064	554 aa		4.05	□□□□□ -1.76
SWD3	YBR175W	PHO87	P25360	923 aa		4.05	□□□□□ -1.76
SWD3	YBR175W	ERP5	P38819	212 aa		4.05	□□□□□ -1.76
SWD3	YBR175W	NRD1	P53617	575 aa	Known RBP RIP-Chip data	4.05	□□□□□ -1.76	not detected
SWD3	YBR175W	GPM1	P00950	247 aa	Known RBP	4.04	□□□□□ -1.76
SWD3	YBR175W	GAL2	P13181	574 aa		4.04	□□□□□ -1.76
SWD3	YBR175W	IRE1	P32361	1115 aa		4.04	□□□□□ -1.76
SWD3	YBR175W	SHM1	P37292	490 aa	Predicted RBP	4.04	□□□□□ -1.76
SWD3	YBR175W	MCX1	P38323	520 aa	Predicted RBP	4.04	□□□□□ -1.76
SWD3	YBR175W	ALA1	P40825	983 aa	Known RBP	4.04	□□□□□ -1.76
SWD3	YBR175W	ALD4	P46367	519 aa	Known RBP	4.04	□□□□□ -1.76
SWD3	YBR175W	JJJ2	P46997	583 aa		4.04	□□□□□ -1.76
SWD3	YBR175W	YMR187C	Q03236	431 aa		4.04	□□□□□ -1.76
SWD3	YBR175W	FPR4	Q06205	392 aa	Predicted RBP	4.04	□□□□□ -1.76
SWD3	YBR175W	RRP15	Q06511	250 aa	Predicted RBP	4.04	□□□□□ -1.76
SWD3	YBR175W	GAS4	Q08271	471 aa		4.04	□□□□□ -1.76
SWD3	YBR175W	MSC6	Q08818	692 aa	Known RBP	4.04	□□□□□ -1.76
SWD3	YBR175W	SWI5	P08153	709 aa		4.03	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 8.8 ms