RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 ANKRD30AQ9BXX3 1397 aa8.78□□□□□ -1
SCN1A-213ENST00000636759 RSPH4AQ5TD94 716 aa8.78□□□□□ -1
SCN1A-213ENST00000636759 ARAP3Q8WWN8 1544 aa8.77□□□□□ -1
SCN1A-213ENST00000636759 CCDC141Q6ZP82 1450 aa8.77□□□□□ -1
SCN1A-213ENST00000636759 MAGI2Q86UL8 1455 aa8.77□□□□□ -1
SCN1A-213ENST00000636759 MRE11P49959 708 aa8.77□□□□□ -1.01
SCN1A-213ENST00000636759 BECN1Q14457 450 aa8.77□□□□□ -1.01
SCN1A-213ENST00000636759 PANK2Q9BZ23 570 aa8.77□□□□□ -1.01
SCN1A-213ENST00000636759 PRDM15P57071 1507 aaPredicted RBP8.77□□□□□ -1.01
SCN1A-213ENST00000636759 GZF1Q9H116 711 aaPredicted RBP8.76□□□□□ -1.01
SCN1A-213ENST00000636759 SYCP2Q9BX26 1530 aa8.76□□□□□ -1.01
SCN1A-213ENST00000636759 ANKRD50Q9ULJ7 1429 aa8.76□□□□□ -1.01
SCN1A-213ENST00000636759 RRP1P56182 461 aaKnown RBP8.76□□□□□ -1.01
SCN1A-213ENST00000636759 PRDM10Q9NQV6 1147 aa8.76□□□□□ -1.01
SCN1A-213ENST00000636759 IQGAP1P46940 1657 aa8.76□□□□□ -1.01
SCN1A-213ENST00000636759 PLA2R1Q13018 1463 aa8.75□□□□□ -1.01
SCN1A-213ENST00000636759 MYOM1P52179 1685 aa8.75□□□□□ -1.01
SCN1A-213ENST00000636759 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.75□□□□□ -1.01
SCN1A-213ENST00000636759 ZMYM4Q5VZL5 1548 aa8.75□□□□□ -1.01
SCN1A-213ENST00000636759 SLKQ9H2G2 1235 aaPredicted RBP8.75□□□□□ -1.01
SCN1A-213ENST00000636759 FAM161AQ3B820 660 aa8.74□□□□□ -1.01
SCN1A-213ENST00000636759 ABCC1P33527 1531 aa8.74□□□□□ -1.01
SCN1A-213ENST00000636759 PLEKHH2Q8IVE3 1493 aa8.74□□□□□ -1.01
SCN1A-213ENST00000636759 UTP14CQ5TAP6 766 aaKnown RBP8.74□□□□□ -1.01
SCN1A-213ENST00000636759 PLCD3Q8N3E9 789 aa8.74□□□□□ -1.01
SCN1A-213ENST00000636759 ABCA9Q8IUA7 1624 aa8.74□□□□□ -1.01
SCN1A-213ENST00000636759 PLCH2O75038 1416 aa8.74□□□□□ -1.01
SCN1A-213ENST00000636759 USP47Q96K76 1375 aa8.74□□□□□ -1.01
SCN1A-213ENST00000636759 ARHGAP5Q13017 1502 aa8.74□□□□□ -1.01
SCN1A-213ENST00000636759 FAM135AQ9P2D6 1515 aa8.74□□□□□ -1.01
SCN1A-213ENST00000636759 PPP4R3BQ5MIZ7 849 aa8.73□□□□□ -1.01
SCN1A-213ENST00000636759 MSNP26038 577 aaKnown RBP8.73□□□□□ -1.01
SCN1A-213ENST00000636759 FTSJ3Q8IY81 847 aaKnown RBP8.72□□□□□ -1.01
SCN1A-213ENST00000636759 FSD2A1L4K1 749 aa8.72□□□□□ -1.01
SCN1A-213ENST00000636759 DMTNQ08495 405 aa8.72□□□□□ -1.01
SCN1A-213ENST00000636759 NCBP3Q53F19 620 aaKnown RBP8.72□□□□□ -1.01
SCN1A-213ENST00000636759 SPHKAPQ2M3C7 1700 aa8.71□□□□□ -1.01
SCN1A-213ENST00000636759 CEP152O94986 1710 aa8.71□□□□□ -1.01
SCN1A-213ENST00000636759 GPRASP1Q5JY77 1395 aa8.71□□□□□ -1.01
SCN1A-213ENST00000636759 ATP10AO60312 1499 aa8.71□□□□□ -1.02
SCN1A-213ENST00000636759 VGLL3A8MV65 326 aa8.71□□□□□ -1.02
SCN1A-213ENST00000636759 BRD2P25440 801 aaKnown RBP8.71□□□□□ -1.02
SCN1A-213ENST00000636759 TERF1P54274 439 aa8.71□□□□□ -1.02
SCN1A-213ENST00000636759 AMER1Q5JTC6 1135 aaPredicted RBP8.71□□□□□ -1.02
SCN1A-213ENST00000636759 RCAN3Q9UKA8 241 aa8.71□□□□□ -1.02
SCN1A-213ENST00000636759 ZNF777Q9ULD5 760 aaPredicted RBP8.71□□□□□ -1.02
SCN1A-213ENST00000636759 KIF15Q9NS87 1388 aa8.71□□□□□ -1.02
SCN1A-213ENST00000636759 DEPDC5O75140 1603 aa8.71□□□□□ -1.02
SCN1A-213ENST00000636759 SENP3-EIF4A1A0A087X0R7 540 aa8.71□□□□□ -1.02
SCN1A-213ENST00000636759 DNTTIP2Q5QJE6 756 aaKnown RBP8.71□□□□□ -1.02
SCN1A-213ENST00000636759 GRPEL1Q9HAV7 217 aa8.71□□□□□ -1.02
SCN1A-213ENST00000636759 KIF20AO95235 890 aa8.7□□□□□ -1.02
SCN1A-213ENST00000636759 PNISRQ8TF01 805 aaKnown RBP8.7□□□□□ -1.02
SCN1A-213ENST00000636759 ISY1Q9ULR0 285 aaKnown RBP8.7□□□□□ -1.02
SCN1A-213ENST00000636759 PRAG1Q86YV5 1406 aa8.7□□□□□ -1.02
SCN1A-213ENST00000636759 DUOX2Q9NRD8 1548 aa8.7□□□□□ -1.02
SCN1A-213ENST00000636759 MADDQ8WXG6 1647 aa8.7□□□□□ -1.02
SCN1A-213ENST00000636759 VIRMAQ69YN4 1812 aaKnown RBP8.7□□□□□ -1.02
SCN1A-213ENST00000636759 HNRNPMP52272 730 aaKnown RBP eCLIP8.7□□□□□ -1.02
SCN1A-213ENST00000636759 IFT172Q9UG01 1749 aa8.7□□□□□ -1.02
SCN1A-213ENST00000636759 ERBB4Q15303 1308 aa8.69□□□□□ -1.02
SCN1A-213ENST00000636759 SLC4A1APQ9BWU0 796 aaKnown RBP8.69□□□□□ -1.02
SCN1A-213ENST00000636759 R3HCC1Q9Y3T6 440 aaKnown RBP8.69□□□□□ -1.02
SCN1A-213ENST00000636759 A2MP01023 1474 aa8.69□□□□□ -1.02
SCN1A-213ENST00000636759 COL17A1Q9UMD9 1497 aaPredicted RBP8.69□□□□□ -1.02
SCN1A-213ENST00000636759 PARD3Q8TEW0 1356 aa8.69□□□□□ -1.02
SCN1A-213ENST00000636759 OFD1O75665 1012 aa8.69□□□□□ -1.02
SCN1A-213ENST00000636759 WDR7Q9Y4E6 1490 aa8.69□□□□□ -1.02
SCN1A-213ENST00000636759 RIPK4P57078 832 aa8.69□□□□□ -1.02
SCN1A-213ENST00000636759 ERBINQ96RT1 1412 aa8.69□□□□□ -1.02
SCN1A-213ENST00000636759 INO80Q9ULG1 1556 aaPredicted RBP8.68□□□□□ -1.02
SCN1A-213ENST00000636759 TAF3Q5VWG9 929 aa8.68□□□□□ -1.02
SCN1A-213ENST00000636759 SKAP1Q86WV1 359 aa8.68□□□□□ -1.02
SCN1A-213ENST00000636759 BLMP54132 1417 aaPredicted RBP8.68□□□□□ -1.02
SCN1A-213ENST00000636759 INSRP06213 1382 aa8.68□□□□□ -1.02
SCN1A-213ENST00000636759 EIF2AK4Q9P2K8 1649 aaKnown RBP8.68□□□□□ -1.02
SCN1A-213ENST00000636759 ZFYVE16Q7Z3T8 1539 aa8.68□□□□□ -1.02
SCN1A-213ENST00000636759 TMEM51Q9NW97 253 aa8.68□□□□□ -1.02
SCN1A-213ENST00000636759 ZFP91Q96JP5 570 aaPredicted RBP8.67□□□□□ -1.02
SCN1A-213ENST00000636759 GTPBP4Q9BZE4 634 aaKnown RBP8.67□□□□□ -1.02
SCN1A-213ENST00000636759 UQCRHLA0A096LP55 91 aa8.67□□□□□ -1.02
SCN1A-213ENST00000636759 RTEL1-TNFRSF6BF6WH68 1400 aa8.67□□□□□ -1.02
SCN1A-213ENST00000636759 LETM1O95202 739 aaPredicted RBP8.67□□□□□ -1.02
SCN1A-213ENST00000636759 UQCRHP07919 91 aa8.67□□□□□ -1.02
SCN1A-213ENST00000636759 TSPY4P0CV99 314 aa8.67□□□□□ -1.02
SCN1A-213ENST00000636759 TSPY10P0CW01 314 aa8.67□□□□□ -1.02
SCN1A-213ENST00000636759 KTN1Q86UP2 1357 aaKnown RBP8.67□□□□□ -1.02
SCN1A-213ENST00000636759 ZSCAN30Q86W11 494 aa8.67□□□□□ -1.02
SCN1A-213ENST00000636759 ZNF830Q96NB3 372 aaPredicted RBP8.67□□□□□ -1.02
SCN1A-213ENST00000636759 TRAK2O60296 914 aa8.66□□□□□ -1.02
SCN1A-213ENST00000636759 KIAA1210Q9ULL0 1709 aa8.66□□□□□ -1.02
SCN1A-213ENST00000636759 ROCK2O75116 1388 aaKnown RBP8.66□□□□□ -1.02
SCN1A-213ENST00000636759 NUP155O75694 1391 aa8.66□□□□□ -1.02
SCN1A-213ENST00000636759 MCM4P33991 863 aa8.66□□□□□ -1.02
SCN1A-213ENST00000636759 TMC1Q8TDI8 760 aa8.66□□□□□ -1.02
SCN1A-213ENST00000636759 NEURL4Q96JN8 1562 aa8.65□□□□□ -1.02
SCN1A-213ENST00000636759 DHX37Q8IY37 1157 aaKnown RBP8.65□□□□□ -1.02
SCN1A-213ENST00000636759 CCDC94Q9BW85 323 aaPredicted RBP8.65□□□□□ -1.02
SCN1A-213ENST00000636759 VWDEQ8N2E2 1590 aa8.65□□□□□ -1.02
SCN1A-213ENST00000636759 BRD4O60885 1362 aaPredicted RBP8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms