RNA–Protein interactions for RNA: ENST00000630866.1

SPTAN1-223, Transcript of spectrin alpha, non-erythrocytic 1, human

TSL 5 BASIC

Gene SPTAN1, Length 7,498 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPTAN1-223	ENST00000630866	LRRFIP1	Q32MZ4	808 aa	Known RBP	10.7	□□□□□ -0.7
SPTAN1-223	ENST00000630866	ABTB2	Q8N961	1025 aa		10.69	□□□□□ -0.7
SPTAN1-223	ENST00000630866	NES	P48681	1621 aa		10.69	□□□□□ -0.7
SPTAN1-223	ENST00000630866	MIA2	Q96PC5	1412 aa		10.69	□□□□□ -0.7
SPTAN1-223	ENST00000630866	SPRYD3	Q8NCJ5	442 aa		10.69	□□□□□ -0.7
SPTAN1-223	ENST00000630866	TCEAL9	Q9UHQ7	104 aa		10.68	□□□□□ -0.7
SPTAN1-223	ENST00000630866	DMRT2	Q9Y5R5	561 aa		10.68	□□□□□ -0.7
SPTAN1-223	ENST00000630866	NECTIN2	Q92692	538 aa		10.68	□□□□□ -0.7
SPTAN1-223	ENST00000630866	DRC7	Q8IY82	874 aa		10.68	□□□□□ -0.7
SPTAN1-223	ENST00000630866	RUSC2	Q8N2Y8	1516 aa		10.67	□□□□□ -0.7
SPTAN1-223	ENST00000630866	STAC3	Q96MF2	364 aa		10.67	□□□□□ -0.7
SPTAN1-223	ENST00000630866	ZNF644	Q9H582	1327 aa	Predicted RBP	10.67	□□□□□ -0.7
SPTAN1-223	ENST00000630866	CUX1	P39880	1505 aa		10.66	□□□□□ -0.7
SPTAN1-223	ENST00000630866	CALR	P27797	417 aa	Known RBP	10.66	□□□□□ -0.7
SPTAN1-223	ENST00000630866	AKAP17A	Q02040	695 aa	Known RBP	10.66	□□□□□ -0.7
SPTAN1-223	ENST00000630866	HMGB2	P26583	209 aa	Known RBP	10.65	□□□□□ -0.7
SPTAN1-223	ENST00000630866	TMEM132E	Q6IEE7	984 aa		10.65	□□□□□ -0.71
SPTAN1-223	ENST00000630866	RTN4	Q9NQC3	1192 aa	Known RBP	10.64	□□□□□ -0.71
SPTAN1-223	ENST00000630866	KIF3A	Q9Y496	699 aa		10.64	□□□□□ -0.71
SPTAN1-223	ENST00000630866	MYBBP1A	Q9BQG0	1328 aa	Known RBP	10.64	□□□□□ -0.71
SPTAN1-223	ENST00000630866	SYNE3	Q6ZMZ3	975 aa		10.64	□□□□□ -0.71
SPTAN1-223	ENST00000630866	WWC1	Q8IX03	1113 aa		10.63	□□□□□ -0.71
SPTAN1-223	ENST00000630866	CABP2	Q9NPB3	220 aa		10.63	□□□□□ -0.71
SPTAN1-223	ENST00000630866	USP47	Q96K76	1375 aa		10.63	□□□□□ -0.71
SPTAN1-223	ENST00000630866	RAPGEF3	O95398	923 aa		10.63	□□□□□ -0.71
SPTAN1-223	ENST00000630866	MSN	P26038	577 aa	Known RBP	10.63	□□□□□ -0.71
SPTAN1-223	ENST00000630866	RILPL2	Q969X0	211 aa		10.63	□□□□□ -0.71
SPTAN1-223	ENST00000630866	SNAPC4	Q5SXM2	1469 aa		10.63	□□□□□ -0.71
SPTAN1-223	ENST00000630866	TSPYL4	Q9UJ04	414 aa		10.63	□□□□□ -0.71
SPTAN1-223	ENST00000630866	APP	P05067	770 aa		10.63	□□□□□ -0.71
SPTAN1-223	ENST00000630866	RIC3	Q7Z5B4	369 aa		10.63	□□□□□ -0.71
SPTAN1-223	ENST00000630866	RIPK4	P57078	832 aa		10.62	□□□□□ -0.71
SPTAN1-223	ENST00000630866	TOM1L2	Q6ZVM7	507 aa		10.62	□□□□□ -0.71
SPTAN1-223	ENST00000630866	RBM42	Q9BTD8	480 aa	Known RBP	10.62	□□□□□ -0.71
SPTAN1-223	ENST00000630866		A0A0U1RQG5	324 aa	Predicted RBP	10.62	□□□□□ -0.71
SPTAN1-223	ENST00000630866	SMG6	Q86US8	1419 aa	Known RBP	10.62	□□□□□ -0.71
SPTAN1-223	ENST00000630866	PDE3B	Q13370	1112 aa		10.62	□□□□□ -0.71
SPTAN1-223	ENST00000630866	ANKRD50	Q9ULJ7	1429 aa		10.62	□□□□□ -0.71
SPTAN1-223	ENST00000630866	DHX16	O60231	1041 aa	Known RBP	10.62	□□□□□ -0.71
SPTAN1-223	ENST00000630866	FKBP5	Q13451	457 aa	Predicted RBP	10.62	□□□□□ -0.71
SPTAN1-223	ENST00000630866	SCAPER	Q9BY12	1400 aa		10.62	□□□□□ -0.71
SPTAN1-223	ENST00000630866	KIF16B	Q96L93	1317 aa		10.61	□□□□□ -0.71
SPTAN1-223	ENST00000630866	RRBP1	Q9P2E9	1410 aa	Known RBP	10.61	□□□□□ -0.71
SPTAN1-223	ENST00000630866	TPM4	P67936	248 aa		10.61	□□□□□ -0.71
SPTAN1-223	ENST00000630866	HMOX1	P09601	288 aa		10.61	□□□□□ -0.71
SPTAN1-223	ENST00000630866	MFAP1	P55081	439 aa	Known RBP	10.61	□□□□□ -0.71
SPTAN1-223	ENST00000630866	AIMP1	Q12904	312 aa	Known RBP	10.61	□□□□□ -0.71
SPTAN1-223	ENST00000630866	BCL2L13	Q9BXK5	485 aa		10.61	□□□□□ -0.71
SPTAN1-223	ENST00000630866	SAMD1	Q6SPF0	538 aa	Predicted RBP	10.6	□□□□□ -0.71
SPTAN1-223	ENST00000630866	KIF6	Q6ZMV9	814 aa		10.6	□□□□□ -0.71
SPTAN1-223	ENST00000630866	TAT	P17735	454 aa	Predicted RBP	10.6	□□□□□ -0.71
SPTAN1-223	ENST00000630866	G3BP1	Q13283	466 aa	Known RBP eCLIP	10.6	□□□□□ -0.71	2e-7	■■■□□ 18.5
SPTAN1-223	ENST00000630866	NOL8	Q76FK4	1167 aa	Known RBP	10.6	□□□□□ -0.71
SPTAN1-223	ENST00000630866	FYCO1	Q9BQS8	1478 aa		10.6	□□□□□ -0.71
SPTAN1-223	ENST00000630866	CREBRF	Q8IUR6	639 aa		10.6	□□□□□ -0.71
SPTAN1-223	ENST00000630866	CHMP4C	Q96CF2	233 aa		10.6	□□□□□ -0.71
SPTAN1-223	ENST00000630866	IFIT2	P09913	472 aa	Known RBP	10.6	□□□□□ -0.71
SPTAN1-223	ENST00000630866	PLEKHH2	Q8IVE3	1493 aa		10.6	□□□□□ -0.71
SPTAN1-223	ENST00000630866	PLEKHO1	Q53GL0	409 aa	Predicted RBP	10.6	□□□□□ -0.71
SPTAN1-223	ENST00000630866	GGNBP2	Q9H3C7	697 aa		10.6	□□□□□ -0.71
SPTAN1-223	ENST00000630866	FAM177B	A6PVY3	158 aa		10.59	□□□□□ -0.71
SPTAN1-223	ENST00000630866	SF3A1	Q15459	793 aa	Known RBP	10.59	□□□□□ -0.71
SPTAN1-223	ENST00000630866	SLC26A8	Q96RN1	970 aa		10.59	□□□□□ -0.71
SPTAN1-223	ENST00000630866		E9PSI1	815 aa		10.59	□□□□□ -0.71
SPTAN1-223	ENST00000630866	SLC52A1	Q9NWF4	448 aa		10.59	□□□□□ -0.71
SPTAN1-223	ENST00000630866	ZKSCAN2	Q63HK3	967 aa		10.59	□□□□□ -0.71
SPTAN1-223	ENST00000630866	PRDM11	Q9NQV5	511 aa		10.59	□□□□□ -0.71
SPTAN1-223	ENST00000630866	DIAPH3	Q9NSV4	1193 aa		10.59	□□□□□ -0.71
SPTAN1-223	ENST00000630866	GBP4	Q96PP9	640 aa		10.58	□□□□□ -0.72
SPTAN1-223	ENST00000630866	PRAM1	Q96QH2	718 aa		10.58	□□□□□ -0.72
SPTAN1-223	ENST00000630866	CSPP1	Q1MSJ5	1256 aa		10.58	□□□□□ -0.72
SPTAN1-223	ENST00000630866	CPLX2	Q6PUV4	134 aa	Known RBP	10.58	□□□□□ -0.72
SPTAN1-223	ENST00000630866	DDX54	Q8TDD1	881 aa	Known RBP	10.58	□□□□□ -0.72
SPTAN1-223	ENST00000630866	ANKRD45	Q5TZF3	282 aa		10.58	□□□□□ -0.72
SPTAN1-223	ENST00000630866	CFTR	P13569	1480 aa		10.58	□□□□□ -0.72
SPTAN1-223	ENST00000630866	CCAR1	Q8IX12	1150 aa	Known RBP	10.58	□□□□□ -0.72
SPTAN1-223	ENST00000630866	GOLGA6L1	Q8N7Z2	621 aa		10.58	□□□□□ -0.72
SPTAN1-223	ENST00000630866	FGD6	Q6ZV73	1430 aa		10.58	□□□□□ -0.72
SPTAN1-223	ENST00000630866	CEP89	Q96ST8	783 aa		10.57	□□□□□ -0.72
SPTAN1-223	ENST00000630866	TOPBP1	Q92547	1522 aa		10.57	□□□□□ -0.72
SPTAN1-223	ENST00000630866	TRDN	Q13061	729 aa		10.57	□□□□□ -0.72
SPTAN1-223	ENST00000630866	FAM184A	Q8NB25	1140 aa		10.57	□□□□□ -0.72
SPTAN1-223	ENST00000630866		H3BQV1	296 aa		10.57	□□□□□ -0.72
SPTAN1-223	ENST00000630866	CCDC27	Q2M243	656 aa		10.57	□□□□□ -0.72
SPTAN1-223	ENST00000630866	IFFO2	Q5TF58	517 aa		10.57	□□□□□ -0.72
SPTAN1-223	ENST00000630866	RUFY2	Q8WXA3	655 aa		10.57	□□□□□ -0.72
SPTAN1-223	ENST00000630866	SYAP1	Q96A49	352 aa	Predicted RBP	10.57	□□□□□ -0.72
SPTAN1-223	ENST00000630866	PLIN1	O60240	522 aa		10.57	□□□□□ -0.72
SPTAN1-223	ENST00000630866	ST18	O60284	1047 aa		10.56	□□□□□ -0.72
SPTAN1-223	ENST00000630866	VSIG10	Q8N0Z9	540 aa		10.56	□□□□□ -0.72
SPTAN1-223	ENST00000630866	API5	Q9BZZ5	524 aa	Known RBP	10.56	□□□□□ -0.72
SPTAN1-223	ENST00000630866	ROCK1	Q13464	1354 aa		10.56	□□□□□ -0.72
SPTAN1-223	ENST00000630866	APAF1	O14727	1248 aa		10.56	□□□□□ -0.72
SPTAN1-223	ENST00000630866	TCERG1	O14776	1098 aa	Known RBP	10.56	□□□□□ -0.72
SPTAN1-223	ENST00000630866	PTMS	P20962	102 aa		10.56	□□□□□ -0.72
SPTAN1-223	ENST00000630866	GNAI1	P63096	354 aa		10.56	□□□□□ -0.72
SPTAN1-223	ENST00000630866	ERICH2	A1L162	156 aa		10.55	□□□□□ -0.72
SPTAN1-223	ENST00000630866	GAS2L2	Q8NHY3	880 aa		10.55	□□□□□ -0.72
SPTAN1-223	ENST00000630866	NOP58	Q9Y2X3	529 aa	Known RBP	10.55	□□□□□ -0.72
SPTAN1-223	ENST00000630866	CASKIN1	Q8WXD9	1431 aa		10.55	□□□□□ -0.72

Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms