RNA–Protein interactions for RNA: ENST00000621271.4

CLTCL1-211, Transcript of clathrin heavy chain like 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLTCL1, Length 5,313 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-211ENST00000621271 SYNJ1O43426 1573 aa12.14□□□□□ -0.47
CLTCL1-211ENST00000621271 AKAP17AQ02040 695 aaKnown RBP12.14□□□□□ -0.47
CLTCL1-211ENST00000621271 THEMISQ8N1K5 641 aaPredicted RBP12.14□□□□□ -0.47
CLTCL1-211ENST00000621271 WDR62O43379 1518 aa12.13□□□□□ -0.47
CLTCL1-211ENST00000621271 PPP1R1BQ9UD71 204 aaPredicted RBP12.13□□□□□ -0.47
CLTCL1-211ENST00000621271 DIAPH1O60610 1272 aaKnown RBP12.13□□□□□ -0.47
CLTCL1-211ENST00000621271 CUX1P39880 1505 aa12.13□□□□□ -0.47
CLTCL1-211ENST00000621271 ESCO1Q5FWF5 840 aa12.13□□□□□ -0.47
CLTCL1-211ENST00000621271 NUTM2BA6NNL0 878 aaPredicted RBP12.12□□□□□ -0.47
CLTCL1-211ENST00000621271 NUTM2EB1AL46 878 aaPredicted RBP12.12□□□□□ -0.47
CLTCL1-211ENST00000621271 NLRP6P59044 892 aa12.12□□□□□ -0.47
CLTCL1-211ENST00000621271 TPM4P67936 248 aa12.12□□□□□ -0.47
CLTCL1-211ENST00000621271 NUTM2AQ8IVF1 878 aaPredicted RBP12.12□□□□□ -0.47
CLTCL1-211ENST00000621271 AMER1Q5JTC6 1135 aaPredicted RBP12.12□□□□□ -0.47
CLTCL1-211ENST00000621271 SYNE3Q6ZMZ3 975 aa12.12□□□□□ -0.47
CLTCL1-211ENST00000621271 NUTM2GQ5VZR2 741 aa12.11□□□□□ -0.47
CLTCL1-211ENST00000621271 KRI1Q8N9T8 703 aaKnown RBP12.11□□□□□ -0.47
CLTCL1-211ENST00000621271 FANCIQ9NVI1 1328 aa12.11□□□□□ -0.47
CLTCL1-211ENST00000621271 CHMP4CQ96CF2 233 aa12.1□□□□□ -0.47
CLTCL1-211ENST00000621271 ZNF608Q9ULD9 1512 aaPredicted RBP12.1□□□□□ -0.47
CLTCL1-211ENST00000621271 DHX16O60231 1041 aaKnown RBP12.1□□□□□ -0.47
CLTCL1-211ENST00000621271 PIP4K2BP78356 416 aa12.1□□□□□ -0.47
CLTCL1-211ENST00000621271 CEP89Q96ST8 783 aa12.1□□□□□ -0.47
CLTCL1-211ENST00000621271 KIF15Q9NS87 1388 aa12.1□□□□□ -0.47
CLTCL1-211ENST00000621271 KIF16BQ96L93 1317 aa12.09□□□□□ -0.47
CLTCL1-211ENST00000621271 GBP4Q96PP9 640 aa12.09□□□□□ -0.47
CLTCL1-211ENST00000621271 STRN4Q9NRL3 753 aa12.09□□□□□ -0.47
CLTCL1-211ENST00000621271 NOC3LQ8WTT2 800 aaKnown RBP12.09□□□□□ -0.47
CLTCL1-211ENST00000621271 STAC3Q96MF2 364 aa12.09□□□□□ -0.47
CLTCL1-211ENST00000621271 PDE3BQ13370 1112 aa12.08□□□□□ -0.47
CLTCL1-211ENST00000621271 NECTIN2Q92692 538 aa12.08□□□□□ -0.47
CLTCL1-211ENST00000621271 APPP05067 770 aa12.08□□□□□ -0.48
CLTCL1-211ENST00000621271 MFAP1P55081 439 aaKnown RBP12.08□□□□□ -0.48
CLTCL1-211ENST00000621271 SF3A1Q15459 793 aaKnown RBP12.08□□□□□ -0.48
CLTCL1-211ENST00000621271 CREBRFQ8IUR6 639 aa12.08□□□□□ -0.48
CLTCL1-211ENST00000621271 MYOM3Q5VTT5 1437 aa12.08□□□□□ -0.48
CLTCL1-211ENST00000621271 NOL8Q76FK4 1167 aaKnown RBP12.07□□□□□ -0.48
CLTCL1-211ENST00000621271 ABTB2Q8N961 1025 aa12.07□□□□□ -0.48
CLTCL1-211ENST00000621271 CPLX2Q6PUV4 134 aaKnown RBP12.07□□□□□ -0.48
CLTCL1-211ENST00000621271 RILPL2Q969X0 211 aa12.07□□□□□ -0.48
CLTCL1-211ENST00000621271 CSPP1Q1MSJ5 1256 aa12.07□□□□□ -0.48
CLTCL1-211ENST00000621271 ANKLE2Q86XL3 938 aa12.07□□□□□ -0.48
CLTCL1-211ENST00000621271 SYAP1Q96A49 352 aaPredicted RBP12.07□□□□□ -0.48
CLTCL1-211ENST00000621271 MIA2Q96PC5 1412 aa12.07□□□□□ -0.48
CLTCL1-211ENST00000621271 AFAP1Q8N556 730 aa12.07□□□□□ -0.48
CLTCL1-211ENST00000621271 TOP2BQ02880 1626 aa12.07□□□□□ -0.48
CLTCL1-211ENST00000621271 POGZQ7Z3K3 1410 aa12.07□□□□□ -0.48
CLTCL1-211ENST00000621271 CNKSR2Q8WXI2 1034 aa12.07□□□□□ -0.48
CLTCL1-211ENST00000621271 MYBBP1AQ9BQG0 1328 aaKnown RBP12.06□□□□□ -0.48
CLTCL1-211ENST00000621271 PTMSP20962 102 aa12.06□□□□□ -0.48
CLTCL1-211ENST00000621271 PDE4CQ08493 712 aa12.06□□□□□ -0.48
CLTCL1-211ENST00000621271 FKBP5Q13451 457 aaPredicted RBP12.06□□□□□ -0.48
CLTCL1-211ENST00000621271 DIAPH3Q9NSV4 1193 aa12.06□□□□□ -0.48
CLTCL1-211ENST00000621271 IFIT2P09913 472 aaKnown RBP12.05□□□□□ -0.48
CLTCL1-211ENST00000621271 G3BP1Q13283 466 aaKnown RBP eCLIP12.05□□□□□ -0.48
CLTCL1-211ENST00000621271 SAMD1Q6SPF0 538 aaPredicted RBP12.05□□□□□ -0.48
CLTCL1-211ENST00000621271 RIC3Q7Z5B4 369 aa12.05□□□□□ -0.48
CLTCL1-211ENST00000621271 TSPYL4Q9UJ04 414 aa12.05□□□□□ -0.48
CLTCL1-211ENST00000621271 KIAA0586Q9BVV6 1533 aa12.05□□□□□ -0.48
CLTCL1-211ENST00000621271 MSNP26038 577 aaKnown RBP12.05□□□□□ -0.48
CLTCL1-211ENST00000621271 ZKSCAN2Q63HK3 967 aa12.04□□□□□ -0.48
CLTCL1-211ENST00000621271 RBM42Q9BTD8 480 aaKnown RBP12.04□□□□□ -0.48
CLTCL1-211ENST00000621271 RIPK4P57078 832 aa12.04□□□□□ -0.48
CLTCL1-211ENST00000621271 GRIN2AQ12879 1464 aa12.04□□□□□ -0.48
CLTCL1-211ENST00000621271 ST18O60284 1047 aa12.04□□□□□ -0.48
CLTCL1-211ENST00000621271 FAM184AQ8NB25 1140 aa12.04□□□□□ -0.48
CLTCL1-211ENST00000621271 BCL2L13Q9BXK5 485 aa12.04□□□□□ -0.48
CLTCL1-211ENST00000621271 KIF21AQ7Z4S6 1674 aa12.03□□□□□ -0.48
CLTCL1-211ENST00000621271 H3BQV1 296 aa12.03□□□□□ -0.48
CLTCL1-211ENST00000621271 IFFO2Q5TF58 517 aa12.03□□□□□ -0.48
CLTCL1-211ENST00000621271 E9PSI1 815 aa12.03□□□□□ -0.48
CLTCL1-211ENST00000621271 TRDNQ13061 729 aa12.03□□□□□ -0.48
CLTCL1-211ENST00000621271 CCDC43Q96MW1 224 aaKnown RBP12.03□□□□□ -0.48
CLTCL1-211ENST00000621271 RUFY2Q8WXA3 655 aa12.03□□□□□ -0.48
CLTCL1-211ENST00000621271 AIMP1Q12904 312 aaKnown RBP12.02□□□□□ -0.48
CLTCL1-211ENST00000621271 ERICH3Q5RHP9 1530 aa12.02□□□□□ -0.48
CLTCL1-211ENST00000621271 CCAR1Q8IX12 1150 aaKnown RBP12.02□□□□□ -0.48
CLTCL1-211ENST00000621271 API5Q9BZZ5 524 aaKnown RBP12.02□□□□□ -0.48
CLTCL1-211ENST00000621271 TMEM132EQ6IEE7 984 aa12.02□□□□□ -0.49
CLTCL1-211ENST00000621271 ARHGAP5Q13017 1502 aa12.02□□□□□ -0.49
CLTCL1-211ENST00000621271 ANKRD45Q5TZF3 282 aa12.01□□□□□ -0.49
CLTCL1-211ENST00000621271 TOM1L2Q6ZVM7 507 aa12.01□□□□□ -0.49
CLTCL1-211ENST00000621271 CABP2Q9NPB3 220 aa12.01□□□□□ -0.49
CLTCL1-211ENST00000621271 USP47Q96K76 1375 aa12.01□□□□□ -0.49
CLTCL1-211ENST00000621271 TRIM29Q14134 588 aa12.01□□□□□ -0.49
CLTCL1-211ENST00000621271 PLEKHO1Q53GL0 409 aaPredicted RBP12.01□□□□□ -0.49
CLTCL1-211ENST00000621271 FAM177BA6PVY3 158 aa12.01□□□□□ -0.49
CLTCL1-211ENST00000621271 TATP17735 454 aaPredicted RBP12.01□□□□□ -0.49
CLTCL1-211ENST00000621271 HMGB2P26583 209 aaKnown RBP12.01□□□□□ -0.49
CLTCL1-211ENST00000621271 ERICH2A1L162 156 aa12□□□□□ -0.49
CLTCL1-211ENST00000621271 PES1O00541 588 aaKnown RBP12□□□□□ -0.49
CLTCL1-211ENST00000621271 GGNBP2Q9H3C7 697 aa12□□□□□ -0.49
CLTCL1-211ENST00000621271 ZNF644Q9H582 1327 aaPredicted RBP12□□□□□ -0.49
CLTCL1-211ENST00000621271 HMOX1P09601 288 aa12□□□□□ -0.49
CLTCL1-211ENST00000621271 KIF6Q6ZMV9 814 aa12□□□□□ -0.49
CLTCL1-211ENST00000621271 GNAI1P63096 354 aa12□□□□□ -0.49
CLTCL1-211ENST00000621271 TPD52L1Q16890 204 aaPredicted RBP12□□□□□ -0.49
CLTCL1-211ENST00000621271 CCDC27Q2M243 656 aa12□□□□□ -0.49
CLTCL1-211ENST00000621271 SLKQ9H2G2 1235 aaPredicted RBP12□□□□□ -0.49
CLTCL1-211ENST00000621271 ZKSCAN1P17029 563 aaPredicted RBP11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 107 ms