RNA–Protein interactions for RNA: ENST00000600117.1

CCDC9-205, Transcript of coiled-coil domain containing 9, humanhuman

TSL 2

Gene CCDC9, Length 580 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-205ENST00000600117 ARHGAP23Q9P227 1491 aa27.92■■■□□ 2.06
CCDC9-205ENST00000600117 MPHOSPH9Q99550 1183 aa27.92■■■□□ 2.06
CCDC9-205ENST00000600117 SLIT1O75093 1534 aa27.92■■■□□ 2.06
CCDC9-205ENST00000600117 LTKP29376 864 aa27.89■■■□□ 2.06
CCDC9-205ENST00000600117 NOS1P29475 1434 aa27.88■■■□□ 2.05
CCDC9-205ENST00000600117 FAM135BQ49AJ0 1406 aa27.88■■■□□ 2.05
CCDC9-205ENST00000600117 TXNDC2Q86VQ3 553 aa27.88■■■□□ 2.05
CCDC9-205ENST00000600117 EID1Q9Y6B2 187 aa27.83■■■□□ 2.05
CCDC9-205ENST00000600117 POTEAQ6S8J7 498 aa27.82■■■□□ 2.04
CCDC9-205ENST00000600117 SPHKAPQ2M3C7 1700 aa27.81■■■□□ 2.04
CCDC9-205ENST00000600117 FOXD1Q16676 465 aa27.81■■■□□ 2.04
CCDC9-205ENST00000600117 TRPM2O94759 1503 aa27.77■■■□□ 2.04
CCDC9-205ENST00000600117 TMEM94Q12767 1356 aa27.76■■■□□ 2.03
CCDC9-205ENST00000600117 PIK3C2BO00750 1634 aa27.76■■■□□ 2.03
CCDC9-205ENST00000600117 DHX57Q6P158 1386 aaKnown RBP27.75■■■□□ 2.03
CCDC9-205ENST00000600117 TMEM2Q9UHN6 1383 aa27.75■■■□□ 2.03
CCDC9-205ENST00000600117 ROBO1Q9Y6N7 1651 aa27.75■■■□□ 2.03
CCDC9-205ENST00000600117 KDM5AP29375 1690 aaKnown RBP27.72■■■□□ 2.03
CCDC9-205ENST00000600117 KCNA6P17658 529 aa27.71■■■□□ 2.03
CCDC9-205ENST00000600117 IDI1Q13907 227 aa27.7■■■□□ 2.02
CCDC9-205ENST00000600117 SLC52A1Q9NWF4 448 aa27.7■■■□□ 2.02
CCDC9-205ENST00000600117 ANKRD30BQ9BXX2 1392 aa27.7■■■□□ 2.02
CCDC9-205ENST00000600117 CLTCL1P53675 1640 aa27.7■■■□□ 2.02
CCDC9-205ENST00000600117 STAG3Q9UJ98 1225 aa27.68■■■□□ 2.02
CCDC9-205ENST00000600117 PROSER2Q86WR7 435 aaPredicted RBP27.66■■■□□ 2.02
CCDC9-205ENST00000600117 SETD1AO15047 1707 aaKnown RBP27.64■■■□□ 2.02
CCDC9-205ENST00000600117 NKTRP30414 1462 aaKnown RBP27.64■■■□□ 2.01
CCDC9-205ENST00000600117 ADGRB3O60242 1522 aa27.62■■■□□ 2.01
CCDC9-205ENST00000600117 NWD1Q149M9 1564 aa27.62■■■□□ 2.01
CCDC9-205ENST00000600117 SLC26A8Q96RN1 970 aa27.62■■■□□ 2.01
CCDC9-205ENST00000600117 CCDC144AA2RUR9 1427 aa27.61■■■□□ 2.01
CCDC9-205ENST00000600117 PHLPP1O60346 1717 aa27.61■■■□□ 2.01
CCDC9-205ENST00000600117 TMEM131LA2VDJ0 1609 aa27.6■■■□□ 2.01
CCDC9-205ENST00000600117 RBM33Q96EV2 1170 aaKnown RBP27.6■■■□□ 2.01
CCDC9-205ENST00000600117 MSH6P52701 1360 aa27.59■■■□□ 2.01
CCDC9-205ENST00000600117 JCADQ9P266 1359 aa27.59■■■□□ 2.01
CCDC9-205ENST00000600117 MYO5BQ9ULV0 1848 aa27.57■■■□□ 2
CCDC9-205ENST00000600117 KIF1BO60333 1816 aa27.56■■■□□ 2
CCDC9-205ENST00000600117 SLAIN2Q9P270 581 aa27.56■■■□□ 2
CCDC9-205ENST00000600117 SPATA31E1Q6ZUB1 1445 aa27.51■■□□□ 1.99
CCDC9-205ENST00000600117 CHGAP10645 457 aaKnown RBP27.51■■□□□ 1.99
CCDC9-205ENST00000600117 COL16A1Q07092 1604 aaPredicted RBP27.49■■□□□ 1.99
CCDC9-205ENST00000600117 CHD2O14647 1828 aaKnown RBP27.49■■□□□ 1.99
CCDC9-205ENST00000600117 BCANQ96GW7 911 aa27.47■■□□□ 1.99
CCDC9-205ENST00000600117 ZFYVE9O95405 1425 aa27.45■■□□□ 1.98
CCDC9-205ENST00000600117 SIN3AQ96ST3 1273 aa27.45■■□□□ 1.98
CCDC9-205ENST00000600117 SPATA31A6Q5VVP1 1343 aa27.44■■□□□ 1.98
CCDC9-205ENST00000600117 LRP6O75581 1613 aa27.43■■□□□ 1.98
CCDC9-205ENST00000600117 UPF1Q92900 1129 aaKnown RBP eCLIP27.43■■□□□ 1.98
CCDC9-205ENST00000600117 RIMS2Q9UQ26 1411 aa27.42■■□□□ 1.98
CCDC9-205ENST00000600117 NEXMIFQ5QGS0 1516 aa27.42■■□□□ 1.98
CCDC9-205ENST00000600117 ZNF772Q68DY9 489 aaPredicted RBP27.42■■□□□ 1.98
CCDC9-205ENST00000600117 PLEKHG1Q9ULL1 1385 aa27.42■■□□□ 1.98
CCDC9-205ENST00000600117 CLSPNQ9HAW4 1339 aa27.41■■□□□ 1.98
CCDC9-205ENST00000600117 NCOA3Q9Y6Q9 1424 aa27.41■■□□□ 1.98
CCDC9-205ENST00000600117 CCER1Q8TC90 406 aaPredicted RBP27.4■■□□□ 1.98
CCDC9-205ENST00000600117 ZNF326Q5BKZ1 582 aaKnown RBP27.39■■□□□ 1.98
CCDC9-205ENST00000600117 MEX3CQ5U5Q3 659 aaKnown RBP27.39■■□□□ 1.98
CCDC9-205ENST00000600117 RGL3Q3MIN7 710 aa27.38■■□□□ 1.97
CCDC9-205ENST00000600117 PPLO60437 1756 aa27.37■■□□□ 1.97
CCDC9-205ENST00000600117 SHPRHQ149N8 1683 aa27.37■■□□□ 1.97
CCDC9-205ENST00000600117 SRCAPQ6ZRS2 3230 aa27.37■■□□□ 1.97
CCDC9-205ENST00000600117 IFT172Q9UG01 1749 aa27.37■■□□□ 1.97
CCDC9-205ENST00000600117 AHDC1Q5TGY3 1603 aaPredicted RBP27.37■■□□□ 1.97
CCDC9-205ENST00000600117 RPGRIP1LQ68CZ1 1315 aa27.37■■□□□ 1.97
CCDC9-205ENST00000600117 HDGFP51858 240 aaKnown RBP27.36■■□□□ 1.97
CCDC9-205ENST00000600117 PPP1R15AO75807 674 aaPredicted RBP27.35■■□□□ 1.97
CCDC9-205ENST00000600117 NEUROD1Q13562 356 aa27.35■■□□□ 1.97
CCDC9-205ENST00000600117 TBX22Q9Y458 520 aa27.35■■□□□ 1.97
CCDC9-205ENST00000600117 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.33■■□□□ 1.97
CCDC9-205ENST00000600117 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.33■■□□□ 1.96
CCDC9-205ENST00000600117 C14orf37Q86TY3 774 aa27.32■■□□□ 1.96
CCDC9-205ENST00000600117 CADPS2Q86UW7 1296 aa27.32■■□□□ 1.96
CCDC9-205ENST00000600117 NUTM2DQ5VT03 806 aaPredicted RBP27.31■■□□□ 1.96
CCDC9-205ENST00000600117 RXRBP28702 533 aa27.29■■□□□ 1.96
CCDC9-205ENST00000600117 C19orf44Q9H6X5 657 aa27.29■■□□□ 1.96
CCDC9-205ENST00000600117 CDK12Q9NYV4 1490 aaPredicted RBP27.28■■□□□ 1.96
CCDC9-205ENST00000600117 ATF3P18847 181 aa27.28■■□□□ 1.96
CCDC9-205ENST00000600117 MYOM2P54296 1465 aa27.27■■□□□ 1.96
CCDC9-205ENST00000600117 DIP2AQ14689 1571 aa27.26■■□□□ 1.96
CCDC9-205ENST00000600117 PIK3R4Q99570 1358 aa27.26■■□□□ 1.95
CCDC9-205ENST00000600117 ADAMTS13Q76LX8 1427 aa27.25■■□□□ 1.95
CCDC9-205ENST00000600117 VGFO15240 615 aaPredicted RBP27.25■■□□□ 1.95
CCDC9-205ENST00000600117 L3MBTL2Q969R5 705 aa27.25■■□□□ 1.95
CCDC9-205ENST00000600117 ADGRF5Q8IZF2 1346 aa27.24■■□□□ 1.95
CCDC9-205ENST00000600117 NRXN1Q9ULB1 1477 aa27.24■■□□□ 1.95
CCDC9-205ENST00000600117 NRXN3Q9Y4C0 1643 aa27.23■■□□□ 1.95
CCDC9-205ENST00000600117 DCAF11Q8TEB1 546 aa27.23■■□□□ 1.95
CCDC9-205ENST00000600117 SETBP1Q9Y6X0 1596 aa27.22■■□□□ 1.95
CCDC9-205ENST00000600117 BRINP3Q76B58 766 aa27.2■■□□□ 1.94
CCDC9-205ENST00000600117 TONSLQ96HA7 1378 aa27.2■■□□□ 1.94
CCDC9-205ENST00000600117 STAC3Q96MF2 364 aa27.19■■□□□ 1.94
CCDC9-205ENST00000600117 KDM2AQ9Y2K7 1162 aa27.19■■□□□ 1.94
CCDC9-205ENST00000600117 PIK3C2GO75747 1445 aa27.18■■□□□ 1.94
CCDC9-205ENST00000600117 NUTM2BA6NNL0 878 aaPredicted RBP27.17■■□□□ 1.94
CCDC9-205ENST00000600117 NUTM2EB1AL46 878 aaPredicted RBP27.17■■□□□ 1.94
CCDC9-205ENST00000600117 NUTM2AQ8IVF1 878 aaPredicted RBP27.17■■□□□ 1.94
CCDC9-205ENST00000600117 AFF2P51816 1311 aa27.16■■□□□ 1.94
CCDC9-205ENST00000600117 DCCP43146 1447 aa27.16■■□□□ 1.94
CCDC9-205ENST00000600117 ASXL1Q8IXJ9 1541 aa27.13■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms