RNA–Protein interactions for RNA: ENST00000599398.5

CCDC9-204, Transcript of coiled-coil domain containing 9, humanhuman

TSL 3

Gene CCDC9, Length 834 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-204ENST00000599398 ZFYVE9O95405 1425 aa33.87■■■■□ 3.01
CCDC9-204ENST00000599398 SENP3Q9H4L4 574 aaPredicted RBP33.86■■■■□ 3.01
CCDC9-204ENST00000599398 SLC26A8Q96RN1 970 aa33.84■■■■□ 3.01
CCDC9-204ENST00000599398 SLC4A1APQ9BWU0 796 aaKnown RBP33.83■■■■□ 3.01
CCDC9-204ENST00000599398 ABCF1Q8NE71 845 aaKnown RBP eCLIP33.81■■■■□ 3
CCDC9-204ENST00000599398 NUTM2DQ5VT03 806 aaPredicted RBP33.8■■■■□ 3
CCDC9-204ENST00000599398 PLEKHG1Q9ULL1 1385 aa33.78■■■■□ 3
CCDC9-204ENST00000599398 LRRC7Q96NW7 1537 aa33.78■■■■□ 3
CCDC9-204ENST00000599398 TRPM2O94759 1503 aa33.77■■■■□ 3
CCDC9-204ENST00000599398 CLTCL1P53675 1640 aa33.75■■■□□ 2.99
CCDC9-204ENST00000599398 TOM1O60784 492 aa33.73■■■□□ 2.99
CCDC9-204ENST00000599398 ZNF326Q5BKZ1 582 aaKnown RBP33.73■■■□□ 2.99
CCDC9-204ENST00000599398 SCAF1Q9H7N4 1312 aaKnown RBP33.72■■■□□ 2.99
CCDC9-204ENST00000599398 KCNA6P17658 529 aa33.7■■■□□ 2.99
CCDC9-204ENST00000599398 SETD5Q9C0A6 1442 aa33.7■■■□□ 2.98
CCDC9-204ENST00000599398 PIP4K2BP78356 416 aa33.69■■■□□ 2.98
CCDC9-204ENST00000599398 KIF1BO60333 1816 aa33.69■■■□□ 2.98
CCDC9-204ENST00000599398 FOXD1Q16676 465 aa33.66■■■□□ 2.98
CCDC9-204ENST00000599398 MPHOSPH9Q99550 1183 aa33.63■■■□□ 2.97
CCDC9-204ENST00000599398 TBX22Q9Y458 520 aa33.63■■■□□ 2.97
CCDC9-204ENST00000599398 XIRP1Q702N8 1843 aaKnown RBP33.63■■■□□ 2.97
CCDC9-204ENST00000599398 NWD1Q149M9 1564 aa33.61■■■□□ 2.97
CCDC9-204ENST00000599398 PROSER2Q86WR7 435 aaPredicted RBP33.61■■■□□ 2.97
CCDC9-204ENST00000599398 ACIN1Q9UKV3 1341 aaKnown RBP33.6■■■□□ 2.97
CCDC9-204ENST00000599398 ADAMTS13Q76LX8 1427 aa33.6■■■□□ 2.97
CCDC9-204ENST00000599398 CHD2O14647 1828 aaKnown RBP33.6■■■□□ 2.97
CCDC9-204ENST00000599398 DIP2AQ14689 1571 aa33.59■■■□□ 2.97
CCDC9-204ENST00000599398 TMEM94Q12767 1356 aa33.59■■■□□ 2.97
CCDC9-204ENST00000599398 NKTRP30414 1462 aaKnown RBP33.58■■■□□ 2.97
CCDC9-204ENST00000599398 RAB3GAP2Q9H2M9 1393 aa33.57■■■□□ 2.96
CCDC9-204ENST00000599398 ALKQ9UM73 1620 aa33.57■■■□□ 2.96
CCDC9-204ENST00000599398 RBM33Q96EV2 1170 aaKnown RBP33.56■■■□□ 2.96
CCDC9-204ENST00000599398 NEXMIFQ5QGS0 1516 aa33.55■■■□□ 2.96
CCDC9-204ENST00000599398 CCDC144AA2RUR9 1427 aa33.52■■■□□ 2.96
CCDC9-204ENST00000599398 SETBP1Q9Y6X0 1596 aa33.5■■■□□ 2.95
CCDC9-204ENST00000599398 NRXN3Q9Y4C0 1643 aa33.5■■■□□ 2.95
CCDC9-204ENST00000599398 PIK3R4Q99570 1358 aa33.49■■■□□ 2.95
CCDC9-204ENST00000599398 HSPA1LP34931 641 aa33.47■■■□□ 2.95
CCDC9-204ENST00000599398 RPGRIP1LQ68CZ1 1315 aa33.45■■■□□ 2.95
CCDC9-204ENST00000599398 VGFO15240 615 aaPredicted RBP33.44■■■□□ 2.94
CCDC9-204ENST00000599398 AMOTL2Q9Y2J4 779 aa33.43■■■□□ 2.94
CCDC9-204ENST00000599398 MSH6P52701 1360 aa33.42■■■□□ 2.94
CCDC9-204ENST00000599398 PTPRUQ92729 1446 aa33.41■■■□□ 2.94
CCDC9-204ENST00000599398 PPLO60437 1756 aa33.41■■■□□ 2.94
CCDC9-204ENST00000599398 C14orf37Q86TY3 774 aa33.4■■■□□ 2.94
CCDC9-204ENST00000599398 RGL3Q3MIN7 710 aa33.39■■■□□ 2.94
CCDC9-204ENST00000599398 METP08581 1390 aa33.38■■■□□ 2.93
CCDC9-204ENST00000599398 SPATA31E1Q6ZUB1 1445 aa33.34■■■□□ 2.93
CCDC9-204ENST00000599398 XRN1Q8IZH2 1706 aaKnown RBP33.33■■■□□ 2.93
CCDC9-204ENST00000599398 NCOA3Q9Y6Q9 1424 aa33.33■■■□□ 2.93
CCDC9-204ENST00000599398 HRCP23327 699 aa33.32■■■□□ 2.92
CCDC9-204ENST00000599398 DISP3Q9P2K9 1392 aa33.3■■■□□ 2.92
CCDC9-204ENST00000599398 FAM135BQ49AJ0 1406 aa33.28■■■□□ 2.92
CCDC9-204ENST00000599398 ANKRD30BQ9BXX2 1392 aa33.26■■■□□ 2.92
CCDC9-204ENST00000599398 SETD1AO15047 1707 aaKnown RBP33.26■■■□□ 2.92
CCDC9-204ENST00000599398 C19orf44Q9H6X5 657 aa33.26■■■□□ 2.91
CCDC9-204ENST00000599398 SLAIN2Q9P270 581 aa33.26■■■□□ 2.91
CCDC9-204ENST00000599398 ROBO1Q9Y6N7 1651 aa33.26■■■□□ 2.91
CCDC9-204ENST00000599398 ADGRF5Q8IZF2 1346 aa33.26■■■□□ 2.91
CCDC9-204ENST00000599398 IFT172Q9UG01 1749 aa33.25■■■□□ 2.91
CCDC9-204ENST00000599398 SIPA1L2Q9P2F8 1722 aaPredicted RBP33.25■■■□□ 2.91
CCDC9-204ENST00000599398 ATF3P18847 181 aa33.23■■■□□ 2.91
CCDC9-204ENST00000599398 CADPS2Q86UW7 1296 aa33.21■■■□□ 2.91
CCDC9-204ENST00000599398 PTCH1Q13635 1447 aa33.12■■■□□ 2.89
CCDC9-204ENST00000599398 PIK3C2GO75747 1445 aa33.11■■■□□ 2.89
CCDC9-204ENST00000599398 DCCP43146 1447 aa33.11■■■□□ 2.89
CCDC9-204ENST00000599398 ROBO2Q9HCK4 1378 aa33.11■■■□□ 2.89
CCDC9-204ENST00000599398 ADGRL3Q9HAR2 1447 aa33.11■■■□□ 2.89
CCDC9-204ENST00000599398 MED1Q15648 1581 aaPredicted RBP33.09■■■□□ 2.89
CCDC9-204ENST00000599398 NALCNQ8IZF0 1738 aa33.09■■■□□ 2.89
CCDC9-204ENST00000599398 PHLPP1O60346 1717 aa33.07■■■□□ 2.88
CCDC9-204ENST00000599398 MYOM2P54296 1465 aa33.06■■■□□ 2.88
CCDC9-204ENST00000599398 STK26Q9P289 416 aa33.06■■■□□ 2.88
CCDC9-204ENST00000599398 PRAG1Q86YV5 1406 aa33.05■■■□□ 2.88
CCDC9-204ENST00000599398 TMEM132EQ6IEE7 984 aa33.05■■■□□ 2.88
CCDC9-204ENST00000599398 NRXN1Q9ULB1 1477 aa33.02■■■□□ 2.88
CCDC9-204ENST00000599398 MST1RQ04912 1400 aa33.02■■■□□ 2.88
CCDC9-204ENST00000599398 ASXL1Q8IXJ9 1541 aa33.01■■■□□ 2.87
CCDC9-204ENST00000599398 LRPPRCP42704 1394 aaKnown RBP33■■■□□ 2.87
CCDC9-204ENST00000599398 C14orf93Q9H972 538 aaKnown RBP33■■■□□ 2.87
CCDC9-204ENST00000599398 CFAP70Q5T0N1 1121 aa32.99■■■□□ 2.87
CCDC9-204ENST00000599398 BRINP3Q76B58 766 aa32.99■■■□□ 2.87
CCDC9-204ENST00000599398 KDM2AQ9Y2K7 1162 aa32.99■■■□□ 2.87
CCDC9-204ENST00000599398 DCAF11Q8TEB1 546 aa32.98■■■□□ 2.87
CCDC9-204ENST00000599398 LAMC1P11047 1609 aa32.98■■■□□ 2.87
CCDC9-204ENST00000599398 PHF23Q9BUL5 403 aaPredicted RBP32.96■■■□□ 2.87
CCDC9-204ENST00000599398 TECPR2O15040 1411 aa32.95■■■□□ 2.87
CCDC9-204ENST00000599398 YTHDC2Q9H6S0 1430 aaKnown RBP32.95■■■□□ 2.87
CCDC9-204ENST00000599398 KNDC1Q76NI1 1749 aa32.95■■■□□ 2.87
CCDC9-204ENST00000599398 ILDR2Q71H61 639 aa32.95■■■□□ 2.87
CCDC9-204ENST00000599398 ABCC11Q96J66 1382 aa32.95■■■□□ 2.86
CCDC9-204ENST00000599398 COL16A1Q07092 1604 aaPredicted RBP32.94■■■□□ 2.86
CCDC9-204ENST00000599398 AHDC1Q5TGY3 1603 aaPredicted RBP32.94■■■□□ 2.86
CCDC9-204ENST00000599398 WAPLQ7Z5K2 1190 aa32.93■■■□□ 2.86
CCDC9-204ENST00000599398 DHX57Q6P158 1386 aaKnown RBP32.92■■■□□ 2.86
CCDC9-204ENST00000599398 JCADQ9P266 1359 aa32.9■■■□□ 2.86
CCDC9-204ENST00000599398 C1orf167Q5SNV9 1468 aa32.89■■■□□ 2.86
CCDC9-204ENST00000599398 PLEKHH1Q9ULM0 1364 aa32.87■■■□□ 2.85
CCDC9-204ENST00000599398 STAC3Q96MF2 364 aa32.87■■■□□ 2.85
CCDC9-204ENST00000599398 CDC42BPGQ6DT37 1551 aa32.84■■■□□ 2.85
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms