RNA–Protein interactions for RNA: ENST00000590339.5

VPS25-205, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 2

Gene VPS25, Length 668 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-205ENST00000590339 SPHKAPQ2M3C7 1700 aa13.44□□□□□ -0.26
VPS25-205ENST00000590339 NEURL4Q96JN8 1562 aa13.44□□□□□ -0.26
VPS25-205ENST00000590339 TMEM2Q9UHN6 1383 aa13.44□□□□□ -0.26
VPS25-205ENST00000590339 NOS1P29475 1434 aa13.43□□□□□ -0.26
VPS25-205ENST00000590339 L3MBTL2Q969R5 705 aa13.43□□□□□ -0.26
VPS25-205ENST00000590339 SLC26A8Q96RN1 970 aa13.43□□□□□ -0.26
VPS25-205ENST00000590339 TRPM2O94759 1503 aa13.43□□□□□ -0.26
VPS25-205ENST00000590339 MED14O60244 1454 aa13.42□□□□□ -0.26
VPS25-205ENST00000590339 SCAF11Q99590 1463 aaKnown RBP13.42□□□□□ -0.26
VPS25-205ENST00000590339 NUTM2DQ5VT03 806 aaPredicted RBP13.42□□□□□ -0.26
VPS25-205ENST00000590339 POLR1AO95602 1720 aaPredicted RBP13.42□□□□□ -0.26
VPS25-205ENST00000590339 EFCAB6Q5THR3 1501 aa13.41□□□□□ -0.26
VPS25-205ENST00000590339 TOM1O60784 492 aa13.41□□□□□ -0.26
VPS25-205ENST00000590339 HDGFP51858 240 aaKnown RBP13.39□□□□□ -0.27
VPS25-205ENST00000590339 IQSEC2Q5JU85 1478 aa13.39□□□□□ -0.27
VPS25-205ENST00000590339 RALGAPBQ86X10 1494 aa13.39□□□□□ -0.27
VPS25-205ENST00000590339 ARHGAP23Q9P227 1491 aa13.39□□□□□ -0.27
VPS25-205ENST00000590339 PIK3C2BO00750 1634 aa13.39□□□□□ -0.27
VPS25-205ENST00000590339 SYNMO15061 1565 aa13.38□□□□□ -0.27
VPS25-205ENST00000590339 RBM33Q96EV2 1170 aaKnown RBP13.38□□□□□ -0.27
VPS25-205ENST00000590339 UBR1Q8IWV7 1749 aa13.38□□□□□ -0.27
VPS25-205ENST00000590339 SLIT1O75093 1534 aa13.38□□□□□ -0.27
VPS25-205ENST00000590339 CCDC144AA2RUR9 1427 aa13.38□□□□□ -0.27
VPS25-205ENST00000590339 CLTCL1P53675 1640 aa13.37□□□□□ -0.27
VPS25-205ENST00000590339 CPS1P31327 1500 aa13.37□□□□□ -0.27
VPS25-205ENST00000590339 TRPM1Q7Z4N2 1603 aa13.36□□□□□ -0.27
VPS25-205ENST00000590339 LAMC1P11047 1609 aa13.35□□□□□ -0.27
VPS25-205ENST00000590339 IQGAP1P46940 1657 aa13.35□□□□□ -0.27
VPS25-205ENST00000590339 NBPF8Q3BBV2 869 aa13.35□□□□□ -0.27
VPS25-205ENST00000590339 ZNF326Q5BKZ1 582 aaKnown RBP13.35□□□□□ -0.27
VPS25-205ENST00000590339 SPATA31E1Q6ZUB1 1445 aa13.34□□□□□ -0.27
VPS25-205ENST00000590339 RIMS2Q9UQ26 1411 aa13.34□□□□□ -0.27
VPS25-205ENST00000590339 KCNA6P17658 529 aa13.34□□□□□ -0.27
VPS25-205ENST00000590339 PROSER2Q86WR7 435 aaPredicted RBP13.34□□□□□ -0.27
VPS25-205ENST00000590339 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.34□□□□□ -0.27
VPS25-205ENST00000590339 HSPA1LP34931 641 aa13.33□□□□□ -0.28
VPS25-205ENST00000590339 LRRC7Q96NW7 1537 aa13.33□□□□□ -0.28
VPS25-205ENST00000590339 ADGRB3O60242 1522 aa13.32□□□□□ -0.28
VPS25-205ENST00000590339 IFT172Q9UG01 1749 aa13.31□□□□□ -0.28
VPS25-205ENST00000590339 DISP3Q9P2K9 1392 aa13.31□□□□□ -0.28
VPS25-205ENST00000590339 PRAG1Q86YV5 1406 aa13.3□□□□□ -0.28
VPS25-205ENST00000590339 TBX22Q9Y458 520 aa13.29□□□□□ -0.28
VPS25-205ENST00000590339 TMEM94Q12767 1356 aa13.29□□□□□ -0.28
VPS25-205ENST00000590339 PLEKHG1Q9ULL1 1385 aa13.29□□□□□ -0.28
VPS25-205ENST00000590339 ZFYVE9O95405 1425 aa13.29□□□□□ -0.28
VPS25-205ENST00000590339 KIF1BO60333 1816 aa13.28□□□□□ -0.28
VPS25-205ENST00000590339 HSPA5P11021 654 aaKnown RBP13.28□□□□□ -0.28
VPS25-205ENST00000590339 MIER1Q8N108 512 aa13.28□□□□□ -0.28
VPS25-205ENST00000590339 EIF4G2P78344 907 aaKnown RBP eCLIP13.27□□□□□ -0.29
VPS25-205ENST00000590339 TMEM131LA2VDJ0 1609 aa13.26□□□□□ -0.29
VPS25-205ENST00000590339 STRCP1A6NGW2 1772 aa13.26□□□□□ -0.29
VPS25-205ENST00000590339 GPRASP1Q5JY77 1395 aa13.26□□□□□ -0.29
VPS25-205ENST00000590339 C14orf37Q86TY3 774 aa13.26□□□□□ -0.29
VPS25-205ENST00000590339 KIAA1210Q9ULL0 1709 aa13.26□□□□□ -0.29
VPS25-205ENST00000590339 KDM5AP29375 1690 aaKnown RBP13.24□□□□□ -0.29
VPS25-205ENST00000590339 USP47Q96K76 1375 aa13.24□□□□□ -0.29
VPS25-205ENST00000590339 AMOTL2Q9Y2J4 779 aa13.24□□□□□ -0.29
VPS25-205ENST00000590339 MYOM2P54296 1465 aa13.23□□□□□ -0.29
VPS25-205ENST00000590339 HIRIP3Q9BW71 556 aaPredicted RBP13.23□□□□□ -0.29
VPS25-205ENST00000590339 CCDC7Q96M83 1385 aa13.22□□□□□ -0.29
VPS25-205ENST00000590339 RGL3Q3MIN7 710 aa13.22□□□□□ -0.29
VPS25-205ENST00000590339 ILDR2Q71H61 639 aa13.22□□□□□ -0.29
VPS25-205ENST00000590339 ADAMTS13Q76LX8 1427 aa13.22□□□□□ -0.29
VPS25-205ENST00000590339 WASHC2AQ641Q2 1341 aa13.21□□□□□ -0.29
VPS25-205ENST00000590339 PPLO60437 1756 aa13.21□□□□□ -0.29
VPS25-205ENST00000590339 MSH6P52701 1360 aa13.2□□□□□ -0.3
VPS25-205ENST00000590339 DCAF11Q8TEB1 546 aa13.2□□□□□ -0.3
VPS25-205ENST00000590339 SLAIN2Q9P270 581 aa13.2□□□□□ -0.3
VPS25-205ENST00000590339 ALKQ9UM73 1620 aa13.2□□□□□ -0.3
VPS25-205ENST00000590339 NRXN1Q9ULB1 1477 aa13.19□□□□□ -0.3
VPS25-205ENST00000590339 MYO5BQ9ULV0 1848 aa13.19□□□□□ -0.3
VPS25-205ENST00000590339 VGFO15240 615 aaPredicted RBP13.19□□□□□ -0.3
VPS25-205ENST00000590339 DDX10Q13206 875 aaKnown RBP13.19□□□□□ -0.3
VPS25-205ENST00000590339 METP08581 1390 aa13.18□□□□□ -0.3
VPS25-205ENST00000590339 PTPRUQ92729 1446 aa13.17□□□□□ -0.3
VPS25-205ENST00000590339 ATF3P18847 181 aa13.17□□□□□ -0.3
VPS25-205ENST00000590339 STAC3Q96MF2 364 aa13.17□□□□□ -0.3
VPS25-205ENST00000590339 C19orf44Q9H6X5 657 aa13.17□□□□□ -0.3
VPS25-205ENST00000590339 ROCK2O75116 1388 aaKnown RBP13.17□□□□□ -0.3
VPS25-205ENST00000590339 PIK3R4Q99570 1358 aa13.17□□□□□ -0.3
VPS25-205ENST00000590339 NKTRP30414 1462 aaKnown RBP13.16□□□□□ -0.3
VPS25-205ENST00000590339 RPGRIP1LQ68CZ1 1315 aa13.15□□□□□ -0.3
VPS25-205ENST00000590339 FAM135BQ49AJ0 1406 aa13.15□□□□□ -0.3
VPS25-205ENST00000590339 PHF23Q9BUL5 403 aaPredicted RBP13.15□□□□□ -0.3
VPS25-205ENST00000590339 KIF7Q2M1P5 1343 aa13.14□□□□□ -0.31
VPS25-205ENST00000590339 C11orf95C9JLR9 678 aaPredicted RBP13.14□□□□□ -0.31
VPS25-205ENST00000590339 CADPS2Q86UW7 1296 aa13.14□□□□□ -0.31
VPS25-205ENST00000590339 CARD11Q9BXL7 1154 aa13.14□□□□□ -0.31
VPS25-205ENST00000590339 KDM2AQ9Y2K7 1162 aa13.14□□□□□ -0.31
VPS25-205ENST00000590339 SETBP1Q9Y6X0 1596 aa13.13□□□□□ -0.31
VPS25-205ENST00000590339 ADGRF5Q8IZF2 1346 aa13.13□□□□□ -0.31
VPS25-205ENST00000590339 NWD1Q149M9 1564 aa13.12□□□□□ -0.31
VPS25-205ENST00000590339 NEXMIFQ5QGS0 1516 aa13.12□□□□□ -0.31
VPS25-205ENST00000590339 XIRP1Q702N8 1843 aaKnown RBP13.11□□□□□ -0.31
VPS25-205ENST00000590339 STK26Q9P289 416 aa13.11□□□□□ -0.31
VPS25-205ENST00000590339 NCOA3Q9Y6Q9 1424 aa13.11□□□□□ -0.31
VPS25-205ENST00000590339 CHD2O14647 1828 aaKnown RBP13.09□□□□□ -0.31
VPS25-205ENST00000590339 PIK3C2GO75747 1445 aa13.09□□□□□ -0.31
VPS25-205ENST00000590339 DIP2AQ14689 1571 aa13.09□□□□□ -0.31
VPS25-205ENST00000590339 CCER2I3L3R5 266 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms