RNA–Protein interactions for RNA: ENST00000589351.5

DNMT1-220, Transcript of DNA methyltransferase 1, humanhuman

TSL 2

Gene DNMT1, Length 672 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-220ENST00000589351 LAPTM4AQ15012 233 aa9.9□□□□□ -0.82
DNMT1-220ENST00000589351 SUPT5HO00267 1087 aaKnown RBP9.89□□□□□ -0.83
DNMT1-220ENST00000589351 GFRA3O60609 400 aa9.89□□□□□ -0.83
DNMT1-220ENST00000589351 PBRM1Q86U86 1689 aa9.89□□□□□ -0.83
DNMT1-220ENST00000589351 ABCA10Q8WWZ4 1543 aa9.88□□□□□ -0.83
DNMT1-220ENST00000589351 TRAF7Q6Q0C0 670 aa9.88□□□□□ -0.83
DNMT1-220ENST00000589351 WRNQ14191 1432 aaPredicted RBP eCLIP9.88□□□□□ -0.83
DNMT1-220ENST00000589351 DPYSL4O14531 572 aa9.87□□□□□ -0.83
DNMT1-220ENST00000589351 CAMK2BQ13554 666 aa9.87□□□□□ -0.83
DNMT1-220ENST00000589351 DDX12PQ92771 950 aa9.86□□□□□ -0.83
DNMT1-220ENST00000589351 TSKSQ9UJT2 592 aa9.85□□□□□ -0.83
DNMT1-220ENST00000589351 GRIN2AQ12879 1464 aa9.85□□□□□ -0.83
DNMT1-220ENST00000589351 TJAP1Q5JTD0 557 aa9.84□□□□□ -0.83
DNMT1-220ENST00000589351 ABCA5Q8WWZ7 1642 aa9.84□□□□□ -0.83
DNMT1-220ENST00000589351 PPP4CP60510 307 aa9.83□□□□□ -0.84
DNMT1-220ENST00000589351 PACS2Q86VP3 889 aa9.83□□□□□ -0.84
DNMT1-220ENST00000589351 PRKD2Q9BZL6 878 aa9.83□□□□□ -0.84
DNMT1-220ENST00000589351 FHAD1B1AJZ9 1412 aa9.82□□□□□ -0.84
DNMT1-220ENST00000589351 TSR1Q2NL82 804 aaKnown RBP9.81□□□□□ -0.84
DNMT1-220ENST00000589351 NUP160Q12769 1436 aa9.8□□□□□ -0.84
DNMT1-220ENST00000589351 SMAPO00193 183 aa9.79□□□□□ -0.84
DNMT1-220ENST00000589351 NRG2O14511 850 aaPredicted RBP9.79□□□□□ -0.84
DNMT1-220ENST00000589351 EN1Q05925 392 aaPredicted RBP9.79□□□□□ -0.84
DNMT1-220ENST00000589351 CEP170Q5SW79 1584 aa9.79□□□□□ -0.84
DNMT1-220ENST00000589351 ERICH3Q5RHP9 1530 aa9.78□□□□□ -0.84
DNMT1-220ENST00000589351 MAP3K7O43318 606 aa9.78□□□□□ -0.84
DNMT1-220ENST00000589351 NBR1Q14596 966 aa9.78□□□□□ -0.84
DNMT1-220ENST00000589351 PPP1R18Q6NYC8 613 aa9.78□□□□□ -0.84
DNMT1-220ENST00000589351 SAMD7Q7Z3H4 446 aa9.78□□□□□ -0.84
DNMT1-220ENST00000589351 ADAMTS12P58397 1594 aa9.78□□□□□ -0.84
DNMT1-220ENST00000589351 TOP2BQ02880 1626 aa9.78□□□□□ -0.84
DNMT1-220ENST00000589351 MTRQ99707 1265 aa9.77□□□□□ -0.85
DNMT1-220ENST00000589351 BIVM-ERCC5R4GMW8 1640 aa9.77□□□□□ -0.85
DNMT1-220ENST00000589351 PRG4Q92954 1404 aaPredicted RBP9.76□□□□□ -0.85
DNMT1-220ENST00000589351 FAM198AQ9UFP1 575 aa9.76□□□□□ -0.85
DNMT1-220ENST00000589351 ERCC6L2Q5T890 1561 aa9.75□□□□□ -0.85
DNMT1-220ENST00000589351 C3orf80F5H4A9 247 aa9.75□□□□□ -0.85
DNMT1-220ENST00000589351 ZNF516Q92618 1163 aa9.75□□□□□ -0.85
DNMT1-220ENST00000589351 CDCA7LQ96GN5 454 aa9.75□□□□□ -0.85
DNMT1-220ENST00000589351 IL21Q9HBE4 155 aa9.75□□□□□ -0.85
DNMT1-220ENST00000589351 RTN4Q9NQC3 1192 aaKnown RBP9.75□□□□□ -0.85
DNMT1-220ENST00000589351 SHROOM2Q13796 1616 aa9.74□□□□□ -0.85
DNMT1-220ENST00000589351 V9GY48 417 aaPredicted RBP9.74□□□□□ -0.85
DNMT1-220ENST00000589351 PRSS12P56730 875 aa9.73□□□□□ -0.85
DNMT1-220ENST00000589351 FAM69CQ0P6D2 419 aa9.73□□□□□ -0.85
DNMT1-220ENST00000589351 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.72□□□□□ -0.85
DNMT1-220ENST00000589351 PRIM1P49642 420 aaKnown RBP9.7□□□□□ -0.86
DNMT1-220ENST00000589351 PDIA6Q15084 440 aa9.7□□□□□ -0.86
DNMT1-220ENST00000589351 ZNF787Q6DD87 383 aa9.7□□□□□ -0.86
DNMT1-220ENST00000589351 NKX2-3Q8TAU0 364 aa9.7□□□□□ -0.86
DNMT1-220ENST00000589351 TATDN2Q93075 761 aa9.7□□□□□ -0.86
DNMT1-220ENST00000589351 PNMA3Q9UL41 463 aa9.69□□□□□ -0.86
DNMT1-220ENST00000589351 APLP1P51693 650 aa9.68□□□□□ -0.86
DNMT1-220ENST00000589351 PDZRN3Q9UPQ7 1066 aa9.68□□□□□ -0.86
DNMT1-220ENST00000589351 KIF13AQ9H1H9 1805 aa9.68□□□□□ -0.86
DNMT1-220ENST00000589351 NBPF26B4DH59 902 aa9.67□□□□□ -0.86
DNMT1-220ENST00000589351 ABCC10Q5T3U5 1492 aa9.66□□□□□ -0.86
DNMT1-220ENST00000589351 RNF40O75150 1001 aa9.66□□□□□ -0.86
DNMT1-220ENST00000589351 KIAA0586Q9BVV6 1533 aa9.66□□□□□ -0.86
DNMT1-220ENST00000589351 KIF27Q86VH2 1401 aa9.65□□□□□ -0.86
DNMT1-220ENST00000589351 SPDYE16A6NNV3 312 aaPredicted RBP9.65□□□□□ -0.86
DNMT1-220ENST00000589351 CERKQ8TCT0 537 aa9.65□□□□□ -0.86
DNMT1-220ENST00000589351 NUDT18Q6ZVK8 323 aa9.64□□□□□ -0.87
DNMT1-220ENST00000589351 MAPKBP1O60336 1514 aa9.64□□□□□ -0.87
DNMT1-220ENST00000589351 RUSC2Q8N2Y8 1516 aa9.64□□□□□ -0.87
DNMT1-220ENST00000589351 ZNF775Q96BV0 537 aaPredicted RBP9.63□□□□□ -0.87
DNMT1-220ENST00000589351 IGF1RP08069 1367 aa9.63□□□□□ -0.87
DNMT1-220ENST00000589351 GRXCR2A6NFK2 248 aa9.62□□□□□ -0.87
DNMT1-220ENST00000589351 HDGFP51858 240 aaKnown RBP9.62□□□□□ -0.87
DNMT1-220ENST00000589351 CDHR5Q9HBB8 845 aa9.62□□□□□ -0.87
DNMT1-220ENST00000589351 PTPRGP23470 1445 aa9.62□□□□□ -0.87
DNMT1-220ENST00000589351 CARMIL2Q6F5E8 1435 aa9.62□□□□□ -0.87
DNMT1-220ENST00000589351 TTBK1Q5TCY1 1321 aaPredicted RBP9.61□□□□□ -0.87
DNMT1-220ENST00000589351 COPS2P61201 443 aa9.61□□□□□ -0.87
DNMT1-220ENST00000589351 CUL7Q14999 1698 aa9.61□□□□□ -0.87
DNMT1-220ENST00000589351 CARMIL1Q5VZK9 1371 aa9.6□□□□□ -0.87
DNMT1-220ENST00000589351 DIP2BQ9P265 1576 aa9.59□□□□□ -0.87
DNMT1-220ENST00000589351 GGCXP38435 758 aa9.59□□□□□ -0.87
DNMT1-220ENST00000589351 AMER1Q5JTC6 1135 aaPredicted RBP9.59□□□□□ -0.87
DNMT1-220ENST00000589351 KDM6BO15054 1643 aa9.59□□□□□ -0.87
DNMT1-220ENST00000589351 ADCY10Q96PN6 1610 aa9.59□□□□□ -0.87
DNMT1-220ENST00000589351 SWT1Q5T5J6 900 aaKnown RBP9.58□□□□□ -0.88
DNMT1-220ENST00000589351 TNIKQ9UKE5 1360 aa9.58□□□□□ -0.88
DNMT1-220ENST00000589351 OSBPP22059 807 aa9.57□□□□□ -0.88
DNMT1-220ENST00000589351 TRIM67Q6ZTA4 783 aa9.57□□□□□ -0.88
DNMT1-220ENST00000589351 TMUB1Q9BVT8 246 aa9.57□□□□□ -0.88
DNMT1-220ENST00000589351 TSPOAP1O95153 1857 aa9.57□□□□□ -0.88
DNMT1-220ENST00000589351 RBM27Q9P2N5 1060 aaKnown RBP9.56□□□□□ -0.88
DNMT1-220ENST00000589351 PLB1Q6P1J6 1458 aa9.55□□□□□ -0.88
DNMT1-220ENST00000589351 ZPR1O75312 459 aa9.55□□□□□ -0.88
DNMT1-220ENST00000589351 E2F4Q16254 413 aa9.54□□□□□ -0.88
DNMT1-220ENST00000589351 SLF2Q8IX21 1173 aa9.54□□□□□ -0.88
DNMT1-220ENST00000589351 FAM9AQ8IZU1 332 aaPredicted RBP9.54□□□□□ -0.88
DNMT1-220ENST00000589351 TTC13Q8NBP0 860 aa9.54□□□□□ -0.88
DNMT1-220ENST00000589351 NECTIN2Q92692 538 aa9.54□□□□□ -0.88
DNMT1-220ENST00000589351 EMID1Q96A84 441 aaPredicted RBP9.54□□□□□ -0.88
DNMT1-220ENST00000589351 ABCC2Q92887 1545 aa9.54□□□□□ -0.88
DNMT1-220ENST00000589351 ARIH1Q9Y4X5 557 aaPredicted RBP9.53□□□□□ -0.88
DNMT1-220ENST00000589351 RNF223E7ERA6 249 aa9.52□□□□□ -0.89
DNMT1-220ENST00000589351 SLC19A1P41440 591 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms