RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 IDI1Q13907 227 aa13.07□□□□□ -0.32
SS18-220ENST00000582092 TXNDC2Q86VQ3 553 aa13.07□□□□□ -0.32
SS18-220ENST00000582092 SCAF11Q99590 1463 aaKnown RBP13.07□□□□□ -0.32
SS18-220ENST00000582092 LTBP4Q8N2S1 1624 aa13.06□□□□□ -0.32
SS18-220ENST00000582092 E9PCH4 1651 aa13.06□□□□□ -0.32
SS18-220ENST00000582092 SLIT1O75093 1534 aa13.06□□□□□ -0.32
SS18-220ENST00000582092 ZNF335Q9H4Z2 1342 aaPredicted RBP13.06□□□□□ -0.32
SS18-220ENST00000582092 SYNMO15061 1565 aa13.06□□□□□ -0.32
SS18-220ENST00000582092 EIF4G2P78344 907 aaKnown RBP eCLIP13.05□□□□□ -0.32
SS18-220ENST00000582092 ZNF326Q5BKZ1 582 aaKnown RBP13.05□□□□□ -0.32
SS18-220ENST00000582092 ARHGAP23Q9P227 1491 aa13.04□□□□□ -0.32
SS18-220ENST00000582092 CPS1P31327 1500 aa13.04□□□□□ -0.32
SS18-220ENST00000582092 TMEM2Q9UHN6 1383 aa13.04□□□□□ -0.32
SS18-220ENST00000582092 ADGRB3O60242 1522 aa13.03□□□□□ -0.32
SS18-220ENST00000582092 CHGAP10645 457 aaKnown RBP13.03□□□□□ -0.32
SS18-220ENST00000582092 MYO5BQ9ULV0 1848 aa13.03□□□□□ -0.32
SS18-220ENST00000582092 CCDC144AA2RUR9 1427 aa13.03□□□□□ -0.32
SS18-220ENST00000582092 BCANQ96GW7 911 aa13.02□□□□□ -0.33
SS18-220ENST00000582092 SPHKAPQ2M3C7 1700 aa13.02□□□□□ -0.33
SS18-220ENST00000582092 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.01□□□□□ -0.33
SS18-220ENST00000582092 KDM2AQ9Y2K7 1162 aa13.01□□□□□ -0.33
SS18-220ENST00000582092 LTKP29376 864 aa13□□□□□ -0.33
SS18-220ENST00000582092 DCAF11Q8TEB1 546 aa13□□□□□ -0.33
SS18-220ENST00000582092 HIRIP3Q9BW71 556 aaPredicted RBP13□□□□□ -0.33
SS18-220ENST00000582092 MIER1Q8N108 512 aa12.99□□□□□ -0.33
SS18-220ENST00000582092 TMEM131LA2VDJ0 1609 aa12.99□□□□□ -0.33
SS18-220ENST00000582092 KIF1BO60333 1816 aa12.98□□□□□ -0.33
SS18-220ENST00000582092 TOM1O60784 492 aa12.98□□□□□ -0.33
SS18-220ENST00000582092 HSPA5P11021 654 aaKnown RBP12.98□□□□□ -0.33
SS18-220ENST00000582092 DDX10Q13206 875 aaKnown RBP12.98□□□□□ -0.33
SS18-220ENST00000582092 RGL3Q3MIN7 710 aa12.98□□□□□ -0.33
SS18-220ENST00000582092 UBAP1LF5GYI3 381 aa12.97□□□□□ -0.33
SS18-220ENST00000582092 CENPBP07199 599 aaPredicted RBP12.96□□□□□ -0.33
SS18-220ENST00000582092 RIMS2Q9UQ26 1411 aa12.96□□□□□ -0.34
SS18-220ENST00000582092 NBPF8Q3BBV2 869 aa12.95□□□□□ -0.34
SS18-220ENST00000582092 PLEKHG1Q9ULL1 1385 aa12.94□□□□□ -0.34
SS18-220ENST00000582092 ANP32CO43423 234 aa12.93□□□□□ -0.34
SS18-220ENST00000582092 STRCP1A6NGW2 1772 aa12.93□□□□□ -0.34
SS18-220ENST00000582092 SCAF1Q9H7N4 1312 aaKnown RBP12.92□□□□□ -0.34
SS18-220ENST00000582092 ZFYVE9O95405 1425 aa12.92□□□□□ -0.34
SS18-220ENST00000582092 KCNA6P17658 529 aa12.92□□□□□ -0.34
SS18-220ENST00000582092 STAC3Q96MF2 364 aa12.92□□□□□ -0.34
SS18-220ENST00000582092 SLC26A8Q96RN1 970 aa12.92□□□□□ -0.34
SS18-220ENST00000582092 CARD11Q9BXL7 1154 aa12.92□□□□□ -0.34
SS18-220ENST00000582092 TRPM2O94759 1503 aa12.92□□□□□ -0.34
SS18-220ENST00000582092 LRRC7Q96NW7 1537 aa12.9□□□□□ -0.34
SS18-220ENST00000582092 CHD2O14647 1828 aaKnown RBP12.9□□□□□ -0.34
SS18-220ENST00000582092 DIP2AQ14689 1571 aa12.9□□□□□ -0.35
SS18-220ENST00000582092 PROSER2Q86WR7 435 aaPredicted RBP12.89□□□□□ -0.35
SS18-220ENST00000582092 TBX22Q9Y458 520 aa12.89□□□□□ -0.35
SS18-220ENST00000582092 CLTCL1P53675 1640 aa12.88□□□□□ -0.35
SS18-220ENST00000582092 ROCK2O75116 1388 aaKnown RBP12.88□□□□□ -0.35
SS18-220ENST00000582092 NKTRP30414 1462 aaKnown RBP12.88□□□□□ -0.35
SS18-220ENST00000582092 PIK3R4Q99570 1358 aa12.87□□□□□ -0.35
SS18-220ENST00000582092 PIP4K2BP78356 416 aa12.87□□□□□ -0.35
SS18-220ENST00000582092 NUTM2DQ5VT03 806 aaPredicted RBP12.87□□□□□ -0.35
SS18-220ENST00000582092 YTHDC1Q96MU7 727 aaKnown RBP12.87□□□□□ -0.35
SS18-220ENST00000582092 POLR3GLQ9BT43 218 aa12.87□□□□□ -0.35
SS18-220ENST00000582092 VGFO15240 615 aaPredicted RBP12.86□□□□□ -0.35
SS18-220ENST00000582092 SENP3Q9H4L4 574 aaPredicted RBP12.86□□□□□ -0.35
SS18-220ENST00000582092 RPGRIP1LQ68CZ1 1315 aa12.86□□□□□ -0.35
SS18-220ENST00000582092 NWD1Q149M9 1564 aa12.86□□□□□ -0.35
SS18-220ENST00000582092 XIRP1Q702N8 1843 aaKnown RBP12.85□□□□□ -0.35
SS18-220ENST00000582092 USP47Q96K76 1375 aa12.85□□□□□ -0.35
SS18-220ENST00000582092 RALGAPBQ86X10 1494 aa12.84□□□□□ -0.35
SS18-220ENST00000582092 MSH6P52701 1360 aa12.83□□□□□ -0.36
SS18-220ENST00000582092 TMEM94Q12767 1356 aa12.83□□□□□ -0.36
SS18-220ENST00000582092 C14orf37Q86TY3 774 aa12.83□□□□□ -0.36
SS18-220ENST00000582092 NEXMIFQ5QGS0 1516 aa12.82□□□□□ -0.36
SS18-220ENST00000582092 SETBP1Q9Y6X0 1596 aa12.81□□□□□ -0.36
SS18-220ENST00000582092 ADAMTS13Q76LX8 1427 aa12.81□□□□□ -0.36
SS18-220ENST00000582092 NCOA3Q9Y6Q9 1424 aa12.81□□□□□ -0.36
SS18-220ENST00000582092 PPLO60437 1756 aa12.81□□□□□ -0.36
SS18-220ENST00000582092 CCDC7Q96M83 1385 aa12.81□□□□□ -0.36
SS18-220ENST00000582092 PRAG1Q86YV5 1406 aa12.8□□□□□ -0.36
SS18-220ENST00000582092 AMOTL2Q9Y2J4 779 aa12.8□□□□□ -0.36
SS18-220ENST00000582092 WASHC2AQ641Q2 1341 aa12.8□□□□□ -0.36
SS18-220ENST00000582092 ST20-MTHFSA0A0A6YYL1 179 aa12.78□□□□□ -0.36
SS18-220ENST00000582092 CCER2I3L3R5 266 aa12.78□□□□□ -0.36
SS18-220ENST00000582092 SPATA31E1Q6ZUB1 1445 aa12.78□□□□□ -0.36
SS18-220ENST00000582092 NRXN3Q9Y4C0 1643 aa12.77□□□□□ -0.36
SS18-220ENST00000582092 ATF3P18847 181 aa12.77□□□□□ -0.37
SS18-220ENST00000582092 HSPA1LP34931 641 aa12.77□□□□□ -0.37
SS18-220ENST00000582092 KIF7Q2M1P5 1343 aa12.77□□□□□ -0.37
SS18-220ENST00000582092 SLC24A1O60721 1099 aa12.76□□□□□ -0.37
SS18-220ENST00000582092 NBPF1Q3BBV0 1214 aa12.76□□□□□ -0.37
SS18-220ENST00000582092 CADPS2Q86UW7 1296 aa12.76□□□□□ -0.37
SS18-220ENST00000582092 C19orf44Q9H6X5 657 aa12.76□□□□□ -0.37
SS18-220ENST00000582092 FAM135BQ49AJ0 1406 aa12.75□□□□□ -0.37
SS18-220ENST00000582092 RBM33Q96EV2 1170 aaKnown RBP12.75□□□□□ -0.37
SS18-220ENST00000582092 XRN1Q8IZH2 1706 aaKnown RBP12.74□□□□□ -0.37
SS18-220ENST00000582092 ALKQ9UM73 1620 aa12.74□□□□□ -0.37
SS18-220ENST00000582092 DISP3Q9P2K9 1392 aa12.74□□□□□ -0.37
SS18-220ENST00000582092 C11orf95C9JLR9 678 aaPredicted RBP12.74□□□□□ -0.37
SS18-220ENST00000582092 TMF1P82094 1093 aa12.74□□□□□ -0.37
SS18-220ENST00000582092 CDCA8Q53HL2 280 aa12.74□□□□□ -0.37
SS18-220ENST00000582092 SLAIN2Q9P270 581 aa12.74□□□□□ -0.37
SS18-220ENST00000582092 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.74□□□□□ -0.37
SS18-220ENST00000582092 IFT172Q9UG01 1749 aa12.74□□□□□ -0.37
SS18-220ENST00000582092 TRPM1Q7Z4N2 1603 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms