RNA–Protein interactions for RNA: ENST00000580541.1

SKA2-205, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 3 BASIC

Gene SKA2, Length 689 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-205ENST00000580541 ZNF142P52746 1687 aaPredicted RBP20.54■□□□□ 0.88
SKA2-205ENST00000580541 ANKLE2Q86XL3 938 aa20.54■□□□□ 0.88
SKA2-205ENST00000580541 UBR1Q8IWV7 1749 aa20.53■□□□□ 0.88
SKA2-205ENST00000580541 DCAF11Q8TEB1 546 aa20.53■□□□□ 0.88
SKA2-205ENST00000580541 TMEM2Q9UHN6 1383 aa20.53■□□□□ 0.88
SKA2-205ENST00000580541 PPP1R15AO75807 674 aaPredicted RBP20.52■□□□□ 0.88
SKA2-205ENST00000580541 ZEB1P37275 1124 aaPredicted RBP20.52■□□□□ 0.88
SKA2-205ENST00000580541 TXNDC2Q86VQ3 553 aa20.51■□□□□ 0.87
SKA2-205ENST00000580541 L3MBTL2Q969R5 705 aa20.51■□□□□ 0.87
SKA2-205ENST00000580541 KDM2AQ9Y2K7 1162 aa20.49■□□□□ 0.87
SKA2-205ENST00000580541 RIMS2Q9UQ26 1411 aa20.49■□□□□ 0.87
SKA2-205ENST00000580541 MYO5BQ9ULV0 1848 aa20.48■□□□□ 0.87
SKA2-205ENST00000580541 SLIT1O75093 1534 aa20.47■□□□□ 0.87
SKA2-205ENST00000580541 ZFYVE9O95405 1425 aa20.46■□□□□ 0.87
SKA2-205ENST00000580541 LMTK3Q96Q04 1460 aa20.46■□□□□ 0.87
SKA2-205ENST00000580541 ARHGAP23Q9P227 1491 aa20.45■□□□□ 0.86
SKA2-205ENST00000580541 BCANQ96GW7 911 aa20.45■□□□□ 0.86
SKA2-205ENST00000580541 HSPA2P54652 639 aa20.43■□□□□ 0.86
SKA2-205ENST00000580541 LTKP29376 864 aa20.42■□□□□ 0.86
SKA2-205ENST00000580541 NUTM2DQ5VT03 806 aaPredicted RBP20.42■□□□□ 0.86
SKA2-205ENST00000580541 DMRT2Q9Y5R5 561 aa20.42■□□□□ 0.86
SKA2-205ENST00000580541 SCAF11Q99590 1463 aaKnown RBP20.42■□□□□ 0.86
SKA2-205ENST00000580541 NEXMIFQ5QGS0 1516 aa20.42■□□□□ 0.86
SKA2-205ENST00000580541 PPLO60437 1756 aa20.41■□□□□ 0.86
SKA2-205ENST00000580541 MYOM2P54296 1465 aa20.4■□□□□ 0.86
SKA2-205ENST00000580541 PLEKHG1Q9ULL1 1385 aa20.39■□□□□ 0.85
SKA2-205ENST00000580541 ADGRF5Q8IZF2 1346 aa20.38■□□□□ 0.85
SKA2-205ENST00000580541 NCKAP5LQ9HCH0 1330 aa20.38■□□□□ 0.85
SKA2-205ENST00000580541 IFT172Q9UG01 1749 aa20.36■□□□□ 0.85
SKA2-205ENST00000580541 C14orf93Q9H972 538 aaKnown RBP20.34■□□□□ 0.85
SKA2-205ENST00000580541 TBX22Q9Y458 520 aa20.34■□□□□ 0.85
SKA2-205ENST00000580541 MED14O60244 1454 aa20.34■□□□□ 0.85
SKA2-205ENST00000580541 NPHP4O75161 1426 aaPredicted RBP20.34■□□□□ 0.85
SKA2-205ENST00000580541 NRXN1Q9ULB1 1477 aa20.33■□□□□ 0.85
SKA2-205ENST00000580541 PRAG1Q86YV5 1406 aa20.33■□□□□ 0.84
SKA2-205ENST00000580541 POLR1AO95602 1720 aaPredicted RBP20.33■□□□□ 0.84
SKA2-205ENST00000580541 PIK3C2GO75747 1445 aa20.32■□□□□ 0.84
SKA2-205ENST00000580541 CFAP70Q5T0N1 1121 aa20.29■□□□□ 0.84
SKA2-205ENST00000580541 SLC26A8Q96RN1 970 aa20.29■□□□□ 0.84
SKA2-205ENST00000580541 SETBP1Q9Y6X0 1596 aa20.29■□□□□ 0.84
SKA2-205ENST00000580541 NBPF8Q3BBV2 869 aa20.28■□□□□ 0.84
SKA2-205ENST00000580541 IQGAP1P46940 1657 aa20.26■□□□□ 0.83
SKA2-205ENST00000580541 DIP2AQ14689 1571 aa20.26■□□□□ 0.83
SKA2-205ENST00000580541 PIK3R4Q99570 1358 aa20.26■□□□□ 0.83
SKA2-205ENST00000580541 LAMC1P11047 1609 aa20.26■□□□□ 0.83
SKA2-205ENST00000580541 KIAA1210Q9ULL0 1709 aa20.25■□□□□ 0.83
SKA2-205ENST00000580541 ALKQ9UM73 1620 aa20.25■□□□□ 0.83
SKA2-205ENST00000580541 STRCQ7RTU9 1775 aa20.25■□□□□ 0.83
SKA2-205ENST00000580541 ROCK2O75116 1388 aaKnown RBP20.24■□□□□ 0.83
SKA2-205ENST00000580541 ADAMTS13Q76LX8 1427 aa20.23■□□□□ 0.83
SKA2-205ENST00000580541 CARD11Q9BXL7 1154 aa20.22■□□□□ 0.83
SKA2-205ENST00000580541 NBPF1Q3BBV0 1214 aa20.2■□□□□ 0.82
SKA2-205ENST00000580541 TMEM132EQ6IEE7 984 aa20.2■□□□□ 0.82
SKA2-205ENST00000580541 RALGAPBQ86X10 1494 aa20.19■□□□□ 0.82
SKA2-205ENST00000580541 KCNA6P17658 529 aa20.19■□□□□ 0.82
SKA2-205ENST00000580541 NRXN3Q9Y4C0 1643 aa20.19■□□□□ 0.82
SKA2-205ENST00000580541 TRPM1Q7Z4N2 1603 aa20.18■□□□□ 0.82
SKA2-205ENST00000580541 AMOTL2Q9Y2J4 779 aa20.18■□□□□ 0.82
SKA2-205ENST00000580541 METP08581 1390 aa20.18■□□□□ 0.82
SKA2-205ENST00000580541 SIRT1Q96EB6 747 aa20.17■□□□□ 0.82
SKA2-205ENST00000580541 STK26Q9P289 416 aa20.17■□□□□ 0.82
SKA2-205ENST00000580541 GPRASP1Q5JY77 1395 aa20.17■□□□□ 0.82
SKA2-205ENST00000580541 LRPPRCP42704 1394 aaKnown RBP20.16■□□□□ 0.82
SKA2-205ENST00000580541 ABCC11Q96J66 1382 aa20.16■□□□□ 0.82
SKA2-205ENST00000580541 SLC24A1O60721 1099 aa20.15■□□□□ 0.82
SKA2-205ENST00000580541 YTHDC2Q9H6S0 1430 aaKnown RBP20.15■□□□□ 0.82
SKA2-205ENST00000580541 EIF3AQ14152 1382 aaKnown RBP20.14■□□□□ 0.81
SKA2-205ENST00000580541 TRAK1Q9UPV9 953 aa20.14■□□□□ 0.81
SKA2-205ENST00000580541 EIF4G2P78344 907 aaKnown RBP eCLIP20.12■□□□□ 0.816e-6■■■■□ 25.1
SKA2-205ENST00000580541 POGKQ9P215 609 aa20.12■□□□□ 0.81
SKA2-205ENST00000580541 SETD1AO15047 1707 aaKnown RBP20.12■□□□□ 0.81
SKA2-205ENST00000580541 ADGRB1O14514 1584 aa20.12■□□□□ 0.81
SKA2-205ENST00000580541 CHD2O14647 1828 aaKnown RBP20.11■□□□□ 0.81
SKA2-205ENST00000580541 PROSER2Q86WR7 435 aaPredicted RBP20.09■□□□□ 0.81
SKA2-205ENST00000580541 TECPR2O15040 1411 aa20.08■□□□□ 0.8
SKA2-205ENST00000580541 FAM135BQ49AJ0 1406 aa20.08■□□□□ 0.8
SKA2-205ENST00000580541 PTPRUQ92729 1446 aa20.07■□□□□ 0.8
SKA2-205ENST00000580541 DLC1Q96QB1 1528 aa20.07■□□□□ 0.8
SKA2-205ENST00000580541 PRAM1Q96QH2 718 aa20.06■□□□□ 0.8
SKA2-205ENST00000580541 ASXL1Q8IXJ9 1541 aa20.06■□□□□ 0.8
SKA2-205ENST00000580541 USP47Q96K76 1375 aa20.06■□□□□ 0.8
SKA2-205ENST00000580541 ZNF335Q9H4Z2 1342 aaPredicted RBP20.05■□□□□ 0.8
SKA2-205ENST00000580541 CENPJQ9HC77 1338 aaPredicted RBP20.05■□□□□ 0.8
SKA2-205ENST00000580541 PTCH1Q13635 1447 aa20.05■□□□□ 0.8
SKA2-205ENST00000580541 NKTRP30414 1462 aaKnown RBP20.05■□□□□ 0.8
SKA2-205ENST00000580541 NCOA3Q9Y6Q9 1424 aa20.03■□□□□ 0.8
SKA2-205ENST00000580541 KNDC1Q76NI1 1749 aa20.03■□□□□ 0.8
SKA2-205ENST00000580541 C14orf37Q86TY3 774 aa20.03■□□□□ 0.8
SKA2-205ENST00000580541 NWD1Q149M9 1564 aa20.03■□□□□ 0.8
SKA2-205ENST00000580541 CPS1P31327 1500 aa20.02■□□□□ 0.8
SKA2-205ENST00000580541 ST20-MTHFSA0A0A6YYL1 179 aa20.02■□□□□ 0.8
SKA2-205ENST00000580541 WAPLQ7Z5K2 1190 aa20.02■□□□□ 0.8
SKA2-205ENST00000580541 ROBO2Q9HCK4 1378 aa20.02■□□□□ 0.8
SKA2-205ENST00000580541 XRN1Q8IZH2 1706 aaKnown RBP20.02■□□□□ 0.79
SKA2-205ENST00000580541 HSPA5P11021 654 aaKnown RBP20■□□□□ 0.79
SKA2-205ENST00000580541 SAFB2Q14151 953 aaKnown RBP eCLIP19.99■□□□□ 0.79
SKA2-205ENST00000580541 CDCA8Q53HL2 280 aa19.98■□□□□ 0.79
SKA2-205ENST00000580541 C19orf44Q9H6X5 657 aa19.98■□□□□ 0.79
SKA2-205ENST00000580541 ARHGEF28Q8N1W1 1705 aaKnown RBP19.97■□□□□ 0.79
SKA2-205ENST00000580541 TMF1P82094 1093 aa19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms