RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 CENPJQ9HC77 1338 aaPredicted RBP14.12□□□□□ -0.15
CLK3-226ENST00000569406 PLCH2O75038 1416 aa14.12□□□□□ -0.15
CLK3-226ENST00000569406 SAMD1Q6SPF0 538 aaPredicted RBP14.12□□□□□ -0.15
CLK3-226ENST00000569406 USP47Q96K76 1375 aa14.11□□□□□ -0.15
CLK3-226ENST00000569406 PLPPR3Q6T4P5 718 aa14.11□□□□□ -0.15
CLK3-226ENST00000569406 PLEKHH2Q8IVE3 1493 aa14.11□□□□□ -0.15
CLK3-226ENST00000569406 TULP1O00294 542 aaPredicted RBP14.11□□□□□ -0.15
CLK3-226ENST00000569406 FAM9BQ8IZU0 186 aa14.11□□□□□ -0.15
CLK3-226ENST00000569406 TSPY4P0CV99 314 aa14.09□□□□□ -0.15
CLK3-226ENST00000569406 TSPY10P0CW01 314 aa14.09□□□□□ -0.15
CLK3-226ENST00000569406 TRAPPC8Q9Y2L5 1435 aa14.09□□□□□ -0.15
CLK3-226ENST00000569406 ATP10AO60312 1499 aa14.08□□□□□ -0.16
CLK3-226ENST00000569406 ANP32BQ92688 251 aaKnown RBP14.08□□□□□ -0.16
CLK3-226ENST00000569406 DUOX2Q9NRD8 1548 aa14.07□□□□□ -0.16
CLK3-226ENST00000569406 A2MP01023 1474 aa14.07□□□□□ -0.16
CLK3-226ENST00000569406 MAPK8IP2Q13387 824 aaPredicted RBP14.07□□□□□ -0.16
CLK3-226ENST00000569406 PRAG1Q86YV5 1406 aa14.06□□□□□ -0.16
CLK3-226ENST00000569406 ARAP3Q8WWN8 1544 aa14.06□□□□□ -0.16
CLK3-226ENST00000569406 DEPDC5O75140 1603 aa14.06□□□□□ -0.16
CLK3-226ENST00000569406 ABCA9Q8IUA7 1624 aa14.06□□□□□ -0.16
CLK3-226ENST00000569406 ZFYVE16Q7Z3T8 1539 aa14.05□□□□□ -0.16
CLK3-226ENST00000569406 L1TD1Q5T7N2 865 aaKnown RBP14.05□□□□□ -0.16
CLK3-226ENST00000569406 TPM2P07951 284 aa14.05□□□□□ -0.16
CLK3-226ENST00000569406 PDE4AP27815 886 aa14.04□□□□□ -0.16
CLK3-226ENST00000569406 ERBINQ96RT1 1412 aa14.04□□□□□ -0.16
CLK3-226ENST00000569406 FAM13BQ9NYF5 915 aa14.04□□□□□ -0.16
CLK3-226ENST00000569406 TMEM51Q9NW97 253 aa14.03□□□□□ -0.16
CLK3-226ENST00000569406 LAMC1P11047 1609 aa14.03□□□□□ -0.16
CLK3-226ENST00000569406 CDK11BP21127 795 aaKnown RBP14.03□□□□□ -0.16
CLK3-226ENST00000569406 POGKQ9P215 609 aa14.03□□□□□ -0.16
CLK3-226ENST00000569406 INO80Q9ULG1 1556 aaPredicted RBP14.02□□□□□ -0.17
CLK3-226ENST00000569406 TEX2Q8IWB9 1127 aa14.02□□□□□ -0.17
CLK3-226ENST00000569406 RNF17Q9BXT8 1623 aaKnown RBP14.01□□□□□ -0.17
CLK3-226ENST00000569406 GPRASP1Q5JY77 1395 aa14.01□□□□□ -0.17
CLK3-226ENST00000569406 PRDM15P57071 1507 aaPredicted RBP14.01□□□□□ -0.17
CLK3-226ENST00000569406 VWDEQ8N2E2 1590 aa14.01□□□□□ -0.17
CLK3-226ENST00000569406 TNNT2P45379 298 aaPredicted RBP14.01□□□□□ -0.17
CLK3-226ENST00000569406 SMAP1Q8IYB5 467 aaPredicted RBP14.01□□□□□ -0.17
CLK3-226ENST00000569406 MROH1Q8NDA8 1641 aa14.01□□□□□ -0.17
CLK3-226ENST00000569406 E9PSI1 815 aa14□□□□□ -0.17
CLK3-226ENST00000569406 PPP4R3BQ5MIZ7 849 aa14□□□□□ -0.17
CLK3-226ENST00000569406 WDR7Q9Y4E6 1490 aa13.98□□□□□ -0.17
CLK3-226ENST00000569406 HOMEZQ8IX15 550 aa13.98□□□□□ -0.17
CLK3-226ENST00000569406 ST20-MTHFSA0A0A6YYL1 179 aa13.98□□□□□ -0.17
CLK3-226ENST00000569406 CCDC144AA2RUR9 1427 aa13.98□□□□□ -0.17
CLK3-226ENST00000569406 NBPF1Q3BBV0 1214 aa13.97□□□□□ -0.17
CLK3-226ENST00000569406 RTEL1-TNFRSF6BF6WH68 1400 aa13.97□□□□□ -0.17
CLK3-226ENST00000569406 KIAA1211Q6ZU35 1233 aa13.96□□□□□ -0.17
CLK3-226ENST00000569406 CEP152O94986 1710 aa13.96□□□□□ -0.18
CLK3-226ENST00000569406 MADDQ8WXG6 1647 aa13.96□□□□□ -0.18
CLK3-226ENST00000569406 KDM2AQ9Y2K7 1162 aa13.96□□□□□ -0.18
CLK3-226ENST00000569406 SPHKAPQ2M3C7 1700 aa13.95□□□□□ -0.18
CLK3-226ENST00000569406 DNTTIP2Q5QJE6 756 aaKnown RBP13.95□□□□□ -0.18
CLK3-226ENST00000569406 CARD11Q9BXL7 1154 aa13.95□□□□□ -0.18
CLK3-226ENST00000569406 CLTCL1P53675 1640 aa13.95□□□□□ -0.18
CLK3-226ENST00000569406 AFAP1Q8N556 730 aa13.95□□□□□ -0.18
CLK3-226ENST00000569406 PTPRTO14522 1441 aa13.94□□□□□ -0.18
CLK3-226ENST00000569406 PANK2Q9BZ23 570 aa13.94□□□□□ -0.18
CLK3-226ENST00000569406 TESK2Q96S53 571 aa13.94□□□□□ -0.18
CLK3-226ENST00000569406 MRS2Q9HD23 443 aa13.94□□□□□ -0.18
CLK3-226ENST00000569406 TRPM2O94759 1503 aa13.94□□□□□ -0.18
CLK3-226ENST00000569406 BACH2Q9BYV9 841 aa13.94□□□□□ -0.18
CLK3-226ENST00000569406 CNPY4Q8N129 248 aa13.93□□□□□ -0.18
CLK3-226ENST00000569406 KIDINS220Q9ULH0 1771 aa13.93□□□□□ -0.18
CLK3-226ENST00000569406 IQGAP1P46940 1657 aa13.93□□□□□ -0.18
CLK3-226ENST00000569406 ESPNB1AK53 854 aa13.93□□□□□ -0.18
CLK3-226ENST00000569406 TCERG1O14776 1098 aaKnown RBP13.93□□□□□ -0.18
CLK3-226ENST00000569406 EFCAB2Q5VUJ9 269 aa13.93□□□□□ -0.18
CLK3-226ENST00000569406 ATP7AQ04656 1500 aa13.92□□□□□ -0.18
CLK3-226ENST00000569406 ROCK2O75116 1388 aaKnown RBP13.92□□□□□ -0.18
CLK3-226ENST00000569406 TET3O43151 1660 aa13.92□□□□□ -0.18
CLK3-226ENST00000569406 C14orf37Q86TY3 774 aa13.92□□□□□ -0.18
CLK3-226ENST00000569406 ZBED9Q6R2W3 1325 aa13.92□□□□□ -0.18
CLK3-226ENST00000569406 COL17A1Q9UMD9 1497 aaPredicted RBP13.92□□□□□ -0.18
CLK3-226ENST00000569406 XRCC6P12956 609 aaKnown RBP eCLIP13.92□□□□□ -0.18
CLK3-226ENST00000569406 FANCAO15360 1455 aa13.92□□□□□ -0.18
CLK3-226ENST00000569406 PER1O15534 1290 aaPredicted RBP13.91□□□□□ -0.18
CLK3-226ENST00000569406 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.91□□□□□ -0.185e-6■□□□□ 8.4
CLK3-226ENST00000569406 EIF2AK4Q9P2K8 1649 aaKnown RBP13.9□□□□□ -0.18
CLK3-226ENST00000569406 DISP3Q9P2K9 1392 aa13.9□□□□□ -0.18
CLK3-226ENST00000569406 GOLGA6L3A6NEY3 463 aa13.9□□□□□ -0.18
CLK3-226ENST00000569406 MAP7D2Q96T17 732 aa13.9□□□□□ -0.18
CLK3-226ENST00000569406 ZBTB22O15209 634 aa13.9□□□□□ -0.18
CLK3-226ENST00000569406 LRPPRCP42704 1394 aaKnown RBP13.9□□□□□ -0.18
CLK3-226ENST00000569406 TRIM44Q96DX7 344 aaPredicted RBP13.89□□□□□ -0.19
CLK3-226ENST00000569406 IRX3P78415 501 aaPredicted RBP13.89□□□□□ -0.19
CLK3-226ENST00000569406 CERS3Q8IU89 383 aa13.89□□□□□ -0.19
CLK3-226ENST00000569406 ASXL2Q76L83 1435 aa13.89□□□□□ -0.19
CLK3-226ENST00000569406 DMTNQ08495 405 aa13.88□□□□□ -0.19
CLK3-226ENST00000569406 PNISRQ8TF01 805 aaKnown RBP13.88□□□□□ -0.19
CLK3-226ENST00000569406 GZF1Q9H116 711 aaPredicted RBP13.88□□□□□ -0.19
CLK3-226ENST00000569406 RGL3Q3MIN7 710 aa13.88□□□□□ -0.19
CLK3-226ENST00000569406 WWC1Q8IX03 1113 aa13.88□□□□□ -0.19
CLK3-226ENST00000569406 IFT172Q9UG01 1749 aa13.88□□□□□ -0.19
CLK3-226ENST00000569406 AEBP1Q8IUX7 1158 aa13.87□□□□□ -0.19
CLK3-226ENST00000569406 NEURL4Q96JN8 1562 aa13.87□□□□□ -0.19
CLK3-226ENST00000569406 FRMPD1Q5SYB0 1578 aa13.86□□□□□ -0.19
CLK3-226ENST00000569406 UGGT1Q9NYU2 1555 aa13.86□□□□□ -0.19
CLK3-226ENST00000569406 PARD3Q8TEW0 1356 aa13.86□□□□□ -0.19
CLK3-226ENST00000569406 CHRM1P11229 460 aaPredicted RBP13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms